Package evaluation to test AllenNeuropixelsBase on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T22:04:30.733 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.13s ################################################################################ # Installation # Installing AllenNeuropixelsBase... Resolving package versions... Installed HDF5 ─ v0.16.10 Updating `~/.julia/environments/v1.11/Project.toml` [0b0e28cf] + AllenNeuropixelsBase v0.4.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [0b0e28cf] + AllenNeuropixelsBase v0.4.0 [9d22b198] + AllenSDK v0.3.1 [4fba245c] + ArrayInterface v7.22.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.6 [336ed68f] + CSV v0.10.15 [49dc2e85] + Calculus v0.5.2 [d360d2e6] + ChainRulesCore v1.26.0 [ae650224] + ChunkSplitters v3.1.2 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 ⌃ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [5732040d] + DelayEmbeddings v2.9.0 [8bb1440f] + DelimitedFiles v1.9.1 [39dd38d3] + Dierckx v0.5.4 ⌅ [0703355e] + DimensionalData v0.27.9 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [68eda718] + GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌅ [f67ccb44] + HDF5 v0.16.10 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [85a1e053] + Interfaces v0.3.2 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [fc60dff9] + LombScargle v1.0.3 [1914dd2f] + MacroTools v0.5.16 ⌅ [20f20a25] + MakieCore v0.8.12 [dbb5928d] + MappedArrays v0.4.3 [eff96d63] + Measurements v2.14.1 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [9bb6cfbd] + NRRD v0.6.5 [5982c9a4] + NWBStream v0.2.0 [b8a86587] + NearestNeighbors v0.4.26 [645ca80c] + Neighborhood v0.2.4 ⌅ [be38d6a3] + Normalization v0.7.3 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [67456a42] + OhMyThreads v0.8.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 ⌅ [18e31ff7] + Peaks v0.5.3 [fa939f87] + Pidfile v1.3.0 [f27b6e38] + Polynomials v4.1.0 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [33c8b6b6] + ProgressLogging v0.1.6 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.31 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.7 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [91464d47] + StableTasks v0.1.7 [cae243ae] + StackViews v0.1.2 [40b095a5] + StateSpaceSets v2.5.3 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [62fd8b95] + TensorCore v0.1.1 [c804724b] + TimeseriesSurrogates v2.8.0 ⌅ [380cddd1] + TimeseriesTools v0.5.4 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [e17b2a0c] + UnsafePointers v1.0.0 [29a6e085] + Wavelets v0.10.1 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 [cd4c43a9] + Dierckx_jll v0.2.0+0 [5ae413db] + EarCut_jll v2.2.4+0 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [0234f1f7] + HDF5_jll v1.12.2+2 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 ⌅ [458c3c95] + OpenSSL_jll v1.1.23+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9ffc57b9bb643bf3fce34f3daf9ff506ed2d8b7a/build.log` Installation completed after 13.45s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 9810.9 ms ✓ HDF5 6596.3 ms ✓ Normalization → DataFramesExt 2874.1 ms ✓ Normalization → DimensionalDataExt 11449.2 ms ✓ NRRD 89322.2 ms ✓ NWBStream 56007.6 ms ✓ TimeseriesSurrogates 110345.1 ms ? TimeseriesTools 184402.1 ms ✓ TimeseriesTools → DierckxExt 18859.8 ms ✓ TimeseriesTools → DSPExt 133152.1 ms ? AllenNeuropixelsBase 8 dependencies successfully precompiled in 634 seconds. 250 already precompiled. 2 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ NWBStream │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/NWBStream/OpjSL/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/hqryp/CondaPkg.toml │ CondaPkg Resolving changes │ + aiohttp │ + allensdk (pip) │ + argschema (pip) │ + fsspec │ + gcc │ + h5py (pip) │ + hdmf (pip) │ + libstdcxx │ + libstdcxx-ng │ + numpy │ + openssl │ + pandas │ + pynwb (pip) │ + python │ + requests │ + scipy │ + setuptools │ + urllib3 │ + uv │ + xarray │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_SPRtcp/.CondaPkg │ ✔ Created /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=1.1, <1.1.24" │ │ urllib3 = "<2" │ │ aiohttp = "*" │ │ libstdcxx-ng = ">=3.4,<14.0" │ │ pandas = "==1.5.3" │ │ xarray = "<2023.2.0" │ │ gcc = ">=12.1.0" │ │ setuptools = "<81" │ │ libstdcxx = ">=3.4,<14.0" │ │ uv = ">=0.4" │ │ fsspec = "*" │ │ numpy = "<1.24" │ │ scipy = "<1.11" │ │ requests = "*" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.9,<3.13, <3.11" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "strict" │ │ description = "automatically generated by CondaPkg.jl" │ │ │ │ [pypi-dependencies] │ │ h5py = "!=3.12.0" │ │ pynwb = "<3" │ │ allensdk = "==2.16.2" │ │ hdmf = ">3.8,<4" │ └ argschema = ">=3.0.1" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ ┌ TimeseriesTools │ WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(SparseArrays.SparseMatrixCSC{T, Ti} where Ti<:Integer) where {T<:Number} in module ChainRulesCoreSparseArraysExt at /home/pkgeval/.julia/packages/ChainRulesCore/Vsbj9/ext/ChainRulesCoreSparseArraysExt.jl:53 overwritten in module ChainRulesCoreSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ AllenNeuropixelsBase │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/NWBStream/OpjSL/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/hqryp/CondaPkg.toml │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_SPRtcp/.CondaPkg │ ✔ Created /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=1.1, <1.1.24" │ │ urllib3 = "<2" │ │ aiohttp = "*" │ │ libstdcxx-ng = ">=3.4,<14.0" │ │ pandas = "==1.5.3" │ │ xarray = "<2023.2.0" │ │ gcc = ">=12.1.0" │ │ setuptools = "<81" │ │ libstdcxx = ">=3.4,<14.0" │ │ uv = ">=0.4" │ │ fsspec = "*" │ │ numpy = "<1.24" │ │ scipy = "<1.11" │ │ requests = "*" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.9,<3.13, <3.11" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "strict" │ │ description = "automatically generated by CondaPkg.jl" │ │ │ │ [pypi-dependencies] │ │ h5py = "!=3.12.0" │ │ pynwb = "<3" │ │ allensdk = "==2.16.2" │ │ hdmf = ">3.8,<4" │ └ argschema = ">=3.0.1" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_SPRtcp/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. │ WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(SparseArrays.SparseMatrixCSC{T, Ti} where Ti<:Integer) where {T<:Number} in module ChainRulesCoreSparseArraysExt at /home/pkgeval/.julia/packages/ChainRulesCore/Vsbj9/ext/ChainRulesCoreSparseArraysExt.jl:53 overwritten in module ChainRulesCoreSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 629.08s ################################################################################ # Testing # Testing AllenNeuropixelsBase Status `/tmp/jl_84xhTQ/Project.toml` [0b0e28cf] AllenNeuropixelsBase v0.4.0 [a93c6f00] DataFrames v1.8.1 [5789e2e9] FileIO v1.17.1 [10745b16] Statistics v1.11.1 [44cfe95a] Pkg v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_84xhTQ/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [0b0e28cf] AllenNeuropixelsBase v0.4.0 [9d22b198] AllenSDK v0.3.1 [4fba245c] ArrayInterface v7.22.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.6 [336ed68f] CSV v0.10.15 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.26.0 [ae650224] ChunkSplitters v3.1.2 [944b1d66] CodecZlib v0.7.8 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 ⌃ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [39dd38d3] Dierckx v0.5.4 ⌅ [0703355e] DimensionalData v0.27.9 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [68eda718] GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 ⌅ [f67ccb44] HDF5 v0.16.10 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [85a1e053] Interfaces v0.3.2 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [fc60dff9] LombScargle v1.0.3 [1914dd2f] MacroTools v0.5.16 ⌅ [20f20a25] MakieCore v0.8.12 [dbb5928d] MappedArrays v0.4.3 [eff96d63] Measurements v2.14.1 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [9bb6cfbd] NRRD v0.6.5 [5982c9a4] NWBStream v0.2.0 [b8a86587] NearestNeighbors v0.4.26 [645ca80c] Neighborhood v0.2.4 ⌅ [be38d6a3] Normalization v0.7.3 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [67456a42] OhMyThreads v0.8.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 ⌅ [18e31ff7] Peaks v0.5.3 [fa939f87] Pidfile v1.3.0 [f27b6e38] Polynomials v4.1.0 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [33c8b6b6] ProgressLogging v0.1.6 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.31 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.7 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [fdea26ae] SIMD v3.7.2 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [91464d47] StableTasks v0.1.7 [cae243ae] StackViews 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[a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling AllenNeuropixelsBase... 25909.3 ms ✓ TimeseriesTools 129804.0 ms ✓ TimeseriesTools → DierckxExt 19642.9 ms ✓ TimeseriesTools → DSPExt Info Given AllenNeuropixelsBase was explicitly requested, output will be shown live   CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/NWBStream/OpjSL/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/hqryp/CondaPkg.toml  CondaPkg Resolving changes  + aiohttp  + allensdk (pip)  + argschema (pip)  + fsspec  + gcc  + h5py (pip)  + hdmf (pip)  + libstdcxx  + libstdcxx-ng  + numpy  + openssl  + pandas  + pynwb (pip)  + python  + requests  + scipy  + setuptools  + urllib3  + uv  + xarray  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_84xhTQ/.CondaPkg ✔ Created /tmp/jl_84xhTQ/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_84xhTQ/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=1.1, <1.1.24"  │ urllib3 = "<2"  │ aiohttp = "*"  │ libstdcxx-ng = ">=3.4,<14.0"  │ pandas = "==1.5.3"  │ xarray = "<2023.2.0"  │ gcc = ">=12.1.0"  │ setuptools = "<81"  │ libstdcxx = ">=3.4,<14.0"  │ uv = ">=0.4"  │ fsspec = "*"  │ numpy = "<1.24"  │ scipy = "<1.11"  │ requests = "*"  │  │ [dependencies.python]  │ channel = "conda-forge"  │ build = "*cp*"  │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.9,<3.13, <3.11"  │  │ [project]  │ name = ".CondaPkg"  │ platforms = ["linux-64"]  │ channels = ["conda-forge"]  │ channel-priority = "strict"  │ description = "automatically generated by CondaPkg.jl"  │  │ [pypi-dependencies]  │ h5py = "!=3.12.0"  │ pynwb = "<3"  │ allensdk = "==2.16.2"  │ hdmf = ">3.8,<4"  └ argschema = ">=3.0.1"  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_84xhTQ/.CondaPkg/pixi.toml ✔ The default environment has been installed. 165954.6 ms ✓ AllenNeuropixelsBase 4 dependencies successfully precompiled in 349 seconds. 256 already precompiled. 1 dependency had output during precompilation: ┌ AllenNeuropixelsBase │ [Output was shown above] └ /tmp/jl_84xhTQ/.CondaPkg/.pixi/envs/default/lib/python3.10/site-packages/allensdk/core/brain_observatory_nwb_data_set.py:43: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81. from pkg_resources import parse_version [ Info: Downloading streamline data to /home/pkgeval/.julia/scratchspaces/00000000-0000-0000-0000-000000000000/allensdk_manifest/data/ReferenceSpace/laplacian_10.nrrd, this may take a few minutes [ Info: Download streamline data with status true ecephys_sessions.csv: 0%| | 0.00/64.4k [00:00