Package evaluation to test AlgebraicPetri on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T11:26:29.519 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.74s ################################################################################ # Installation # Installing AlgebraicPetri... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:680 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.26 Updating `~/.julia/environments/v1.11/Project.toml` [4f99eebe] + AlgebraicPetri v0.10.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [227ef7b5] + ACSets v0.2.26 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [4f99eebe] + AlgebraicPetri v0.10.0 [4fba245c] + ArrayInterface v7.22.0 [134e5e36] + Catlab v0.17.4 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.6 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [f0ffcf3b] + GATlab v0.2.2 [46192b85] + GPUArraysCore v0.2.0 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ee39098] + LabelledArrays v1.17.0 [9c8b4983] + LightXML v0.9.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 ⌅ [d236fae5] + PreallocationTools v0.4.34 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.44.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.2 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.11/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 33452.3 ms ✓ SciMLBase 38647.3 ms ✓ LabelledArrays 50810.5 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4540.9 ms ✓ SciMLBase → SciMLBaseMLStyleExt 3109.4 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3877.3 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 3974.3 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 3647.1 ms ✓ SCCNonlinearSolve 73657.7 ms ✓ AlgebraicPetri 55955.5 ms ✓ SymbolicUtils → SymbolicUtilsLabelledArraysExt 81548.2 ms ✓ LinearSolve 157088.9 ms ✓ Symbolics 11093.9 ms ✓ SciMLJacobianOperators 10126.6 ms ✓ SCCNonlinearSolve → SCCNonlinearSolveChainRulesCoreExt 9086.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 9307.5 ms ✓ LinearSolve → LinearSolveSparseArraysExt 180037.3 ms ✓ Symbolics → SymbolicsForwardDiffExt 11371.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 12146.3 ms ✓ LineSearch 19767.4 ms ✓ NonlinearSolveBase 8241.6 ms ✓ LinearSolve → LinearSolveEnzymeExt 14273.5 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 63610.3 ms ✓ LineSearch → LineSearchLineSearchesExt 23175.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4318.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 3621.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3181.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 35582.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3273.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 10872.2 ms ✓ BracketingNonlinearSolve 19180.0 ms ✓ NonlinearSolveSpectralMethods 46873.2 ms ✓ NonlinearSolveQuasiNewton 68917.4 ms ✓ NonlinearSolveFirstOrder 3812.9 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 10718.5 ms ✓ DiffEqBase 4626.4 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 5498.3 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3831.2 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 23251.5 ms ✓ SimpleNonlinearSolve 4178.6 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4747.7 ms ✓ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 4953.9 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4480.0 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4109.9 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 13194.7 ms ✓ DiffEqCallbacks 11679.2 ms ✓ OrdinaryDiffEqCore 4544.0 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 121254.8 ms ✓ DiffEqNoiseProcess 31866.4 ms ✓ JumpProcesses 17370.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 367943.9 ms ✓ NonlinearSolve 66932.9 ms ✓ OrdinaryDiffEqExplicitRK 8061.4 ms ✓ OrdinaryDiffEqHighOrderRK 8905.3 ms ✓ OrdinaryDiffEqStabilizedRK 7453.1 ms ✓ OrdinaryDiffEqSymplecticRK 9810.7 ms ✓ OrdinaryDiffEqSSPRK 11026.8 ms ✓ OrdinaryDiffEqLowOrderRK 5993.5 ms ✓ OrdinaryDiffEqFunctionMap 16492.2 ms ✓ OrdinaryDiffEqLinear 15941.6 ms ✓ OrdinaryDiffEqTsit5 76435.7 ms ✓ OrdinaryDiffEqVerner 7278.2 ms ✓ OrdinaryDiffEqPRK 7743.6 ms ✓ OrdinaryDiffEqRKN 9102.6 ms ✓ OrdinaryDiffEqFeagin 8838.9 ms ✓ OrdinaryDiffEqQPRK 10748.4 ms ✓ OrdinaryDiffEqLowStorageRK 114301.7 ms ✓ OrdinaryDiffEqDifferentiation ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 11 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 #818 at ./asyncevent.jl:311 jfptr_YY.818_67287.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000071d7fd18ea40 Total snapshots: 441. Utilization: 0% ╎441 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var… ╎ 441 @Base/asyncevent.jl:145; _trywait(t::Timer) ╎ 441 @Base/condition.jl:125; wait ╎ 441 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S… ╎ 441 @Base/task.jl:1021; wait() 440╎ 441 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 task_done_hook at ./task.jl:694 jfptr_task_done_hook_66687.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_finish_task at /source/src/task.c:315 start_task at /source/src/task.c:1215 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007fb10443c970 Total snapshots: 488. Utilization: 0% ╎488 @Base/task.jl:694; task_done_hook(t::Task) ╎ 488 @Base/task.jl:1021; wait() 487╎ 488 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [11] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 poptask at ./task.jl:1012 wait at ./task.jl:1021 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 #818 at ./asyncevent.jl:311 profile_printing_listener at ./Base.jl:582 #1192 at ./Base.jl:622 jfptr_YY.818_67287.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 66654027 (Pool: 66653024; Big: 1003); GC: 85 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") jfptr_YY.1192_76260.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 14481444 (Pool: 14480669; Big: 775); GC: 14 error at ./error.jl:35 #schedule#763 at ./task.jl:884 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 error at ./error.jl:35 #schedule#763 at ./task.jl:884 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 poptask at ./task.jl:1012 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 wait at ./task.jl:1021 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 uv_write at ./stream.jl:1081 poptask at ./task.jl:1012 unsafe_write at ./stream.jl:1154 wait at ./task.jl:1021 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 uv_write at ./stream.jl:1081 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x71d830d44976) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 unsafe_write at ./stream.jl:1154 _atexit at ./initdefs.jl:454 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x7fb14012e646) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_exit_thread0_cb at /source/src/signals-unix.c:517 _atexit at ./initdefs.jl:454 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2735.01s: test duration exceeded the time limit