Package evaluation to test AlgebraicAgents on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T05:23:51.116 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.55s ################################################################################ # Installation # Installing AlgebraicAgents... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [f6eb0ae3] + AlgebraicAgents v0.3.26 Updating `~/.julia/environments/v1.11/Manifest.toml` [f6eb0ae3] + AlgebraicAgents v0.3.26 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [c27321d9] + Glob v1.4.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.9 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.11/activate_set.jl:78 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:680 Precompiling package dependencies... Precompiling project... 3801.7 ms ✓ ADTypes 1153.7 ms ✓ EnzymeCore 635.8 ms ✓ BitTwiddlingConvenienceFunctions 3388.1 ms ✓ SciMLOperators 3078.1 ms ✓ StaticArrayInterface 1073.0 ms ✓ Sundials_jll 85223.1 ms ✓ ExponentialUtilities 3584.3 ms ✓ CPUSummary 2022.9 ms ✓ QuickHeaps 6345.7 ms ✓ DrWatson 254675.5 ms ✓ Catlab 2110.3 ms ✓ AlgebraicAgents 114905.0 ms ✓ Latexify → DataFramesExt 55578.9 ms ✓ MetaGraphs 6993.5 ms ✓ StaticGraphs 1991.9 ms ✓ PreallocationTools 2618.4 ms ✓ NLSolversBase 3831.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 3773.9 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 3813.7 ms ✓ QuasiMonteCarlo → QuasiMonteCarloDistributionsExt 38934.8 ms ✓ StreamSampling 17771.6 ms ✓ Plots → FileIOExt 850.0 ms ✓ EnzymeCore → AdaptExt 1579.6 ms ✓ HostCPUFeatures 1580.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1490.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2114.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1134.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1146.6 ms ✓ CloseOpenIntervals 1216.9 ms ✓ LayoutPointers 2442.7 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 1024.1 ms ✓ PolyesterWeave 353335.8 ms ✓ Catlab → CatlabDataFramesExt 28857.2 ms ✓ Catlab → CatlabGraphsExt 73446.7 ms ✓ Catlab → CatlabMetaGraphsExt 91734.5 ms ✓ LightOSM 13404.6 ms ✓ LabelledArrays 2823.7 ms ✓ LineSearches 100341.5 ms ✓ FastAlmostBandedMatrices 38234.2 ms ✓ SciMLBase 34149.9 ms ✓ SparseDiffTools 12224.9 ms ✓ VectorizationBase 2454.8 ms ✓ StrideArraysCore 184467.0 ms ✓ Agents 177801.4 ms ✓ AlgebraicDynamics 3273.8 ms ✓ NLsolve 2946.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3070.0 ms ✓ SLEEFPirates 2197.1 ms ✓ Polyester 3408.8 ms ✓ VectorizedRNG 47151.5 ms ✓ LoopVectorization 2257.9 ms ✓ FastBroadcast 42533.4 ms ✓ SparseDiffTools → SparseDiffToolsPolyesterExt 2236.0 ms ✓ VectorizedRNG → VectorizedRNGStaticArraysExt 3167.2 ms ✓ LoopVectorization → SpecialFunctionsExt 73457.5 ms ✓ LoopVectorization → ForwardDiffExt 19723.3 ms ✓ TriangularSolve 31467.3 ms ✓ DiffEqBase 51722.5 ms ✓ RecursiveFactorization 4061.0 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 23370.0 ms ✓ DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 71289.7 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 84469.5 ms ✓ SciMLNLSolve 13197.9 ms ✓ SimpleNonlinearSolve 6287.4 ms ✓ DiffEqCallbacks 35928.6 ms ✓ Sundials 31295.5 ms ✓ JumpProcesses 171252.1 ms ✓ LinearSolve 132132.8 ms ✓ DiffEqNoiseProcess 21565.0 ms ✓ SteadyStateDiffEq 27303.9 ms ✓ JumpProcesses → JumpProcessFastBroadcastExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 [inlined] success at ./process.jl:556 jfptr_success_67918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #compilecache#1123 at ./loading.jl:3125 compilecache at ./loading.jl:3081 [inlined] #33 at ./precompilation.jl:933 with_logstate at ./logging/logging.jl:526 with_logger at ./logging/logging.jl:637 [inlined] #32 at ./precompilation.jl:927 [inlined] #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 jfptr_YY.mkpidlockYY.7_76350.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mkpidlock at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:92 #mkpidlock#6 at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 jfptr_mkpidlock_45025.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #trymkpidlock#11 at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 trymkpidlock at /source/usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:114 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 precompile_pkgs_maybe_cachefile_lock at ./precompilation.jl:1115 jfptr_precompile_pkgs_maybe_cachefile_lock_72157.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 macro expansion at ./timing.jl:421 [inlined] #29 at ./precompilation.jl:926 jfptr_YY.29_72052.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007c3a53f35460 Total snapshots: 1. Utilization: 0% ╎1 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var"#2#… ╎ 1 @Base/asyncevent.jl:145; _trywait(t::Timer) ╎ 1 @Base/condition.jl:125; wait ╎ 1 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.SpinL… ╎ 1 @Base/task.jl:1021; wait() ╎ 1 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{Ta… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 task_done_hook at ./task.jl:694 jfptr_task_done_hook_66687.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_finish_task at /source/src/task.c:315 start_task at /source/src/task.c:1215 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007aef9792cb00 Total snapshots: 308. Utilization: 0% ╎308 @Base/task.jl:694; task_done_hook(t::Task) ╎ 308 @Base/task.jl:1021; wait() 307╎ 308 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 poptask at ./task.jl:1012 wait at ./task.jl:1021 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait_readnb at ./stream.jl:416 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 eof at ./stream.jl:106 profile_printing_listener at ./Base.jl:582 eof at ./io.jl:472 [inlined] #1192 at ./Base.jl:622 monitor_std#18 at ./precompilation.jl:746 monitor_std at ./precompilation.jl:742 jfptr_YY.1192_76260.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 13835845 (Pool: 13835117; Big: 728); GC: 14 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") jfptr_monitor_std_45082.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 error at ./error.jl:35 #30 at ./precompilation.jl:907 #schedule#763 at ./task.jl:884 jfptr_YY.30_72004.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 29885683 (Pool: 29884418; Big: 1265); GC: 19 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 error at ./error.jl:35 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 #schedule#763 at ./task.jl:884 poptask at ./task.jl:1012 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 wait at ./task.jl:1021 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 uv_write at ./stream.jl:1081 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 unsafe_write at ./stream.jl:1154 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 poptask at ./task.jl:1012 wait at ./task.jl:1021 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x7aef9f752926) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 uv_write at ./stream.jl:1081 _atexit at ./initdefs.jl:454 unsafe_write at ./stream.jl:1154 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x7c3a92161a76) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _atexit at ./initdefs.jl:454 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) PkgEval terminated after 2747.34s: test duration exceeded the time limit