Package evaluation to test ACEfit on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T10:23:29.313 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 12.15s ################################################################################ # Installation # Installing ACEfit... Resolving package versions... Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed IrrationalConstants ───────── v0.2.6 Installed Adapt ─────────────────────── v4.4.0 Installed PtrArrays ─────────────────── v1.3.0 Installed Crayons ───────────────────── v4.1.1 Installed DiffRules ─────────────────── v1.15.1 Installed Preferences ───────────────── v1.5.1 Installed PositiveFactorizations ────── v0.2.4 Installed ParallelDataTransfer ──────── v0.5.1 Installed TableTraits ───────────────── v1.0.1 Installed DiffResults ───────────────── v1.1.0 Installed ADTypes ───────────────────── v1.21.0 Installed FFTW ──────────────────────── v1.10.0 Installed PrettyTables ──────────────── v3.1.2 Installed SpecialFunctions ──────────── v2.6.1 Installed SentinelArrays ────────────── v1.4.9 Installed DataAPI ───────────────────── v1.16.0 Installed Tables ────────────────────── v1.12.1 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed PooledArrays ──────────────── v1.4.3 Installed InlineStrings ─────────────── v1.4.5 Installed Setfield ──────────────────── v1.1.2 Installed Optim ─────────────────────── v1.13.3 Installed RecipesBase ───────────────── v1.3.4 Installed JLLWrappers ───────────────── v1.7.1 Installed ACEfit ────────────────────── v0.3.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed TimerOutputs ──────────────── v0.5.29 Installed ProgressMeter ─────────────── v1.11.0 Installed IterativeSolvers ──────────── v0.9.4 Installed StaticArrays ──────────────── v1.9.16 Installed Nullables ─────────────────── v1.0.0 Installed NaNMath ───────────────────── v1.1.3 Installed StaticArraysCore ──────────── v1.4.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataValueInterfaces ───────── v1.0.0 Installed QRupdate ──────────────────── v1.0.1 Installed ConstructionBase ──────────── v1.6.0 Installed PrecompileTools ───────────── v1.2.1 Installed OrderedCollections ────────── v1.8.1 Installed FastClosures ──────────────── v0.3.2 Installed LowRankApprox ─────────────── v0.5.5 Installed EnumX ─────────────────────── v1.0.5 Installed LaTeXStrings ──────────────── v1.4.0 Installed NLSolversBase ─────────────── v7.10.0 Installed LowRankMatrices ───────────── v1.0.2 Installed InvertedIndices ───────────── v1.3.1 Installed Reexport ──────────────────── v1.2.2 Installed ActiveSetPursuit ──────────── v0.0.4 Installed ArrayInterface ────────────── v7.22.0 Installed FillArrays ────────────────── v1.16.0 Installed LineSearches ──────────────── v7.5.1 Installed ForwardDiff ───────────────── v1.3.1 Installed LinearOperators ───────────── v2.11.0 Installed DataFrames ────────────────── v1.8.1 Installed Statistics ────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed Requires ──────────────────── v1.3.1 Installed CommonSubexpressions ──────── v0.3.1 Installed AliasTables ───────────────── v1.1.3 Installed LogExpFunctions ───────────── v0.3.29 Installed DataStructures ────────────── v0.19.3 Installed MacroTools ────────────────── v0.5.16 Installed StatsAPI ──────────────────── v1.8.0 Installed ExprTools ─────────────────── v0.1.10 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed StringManipulation ────────── v0.4.2 Installed Compat ────────────────────── v4.18.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed FiniteDiff ────────────────── v2.29.0 Installed StatsBase ─────────────────── v0.34.10 Installed DifferentiationInterface ──── v0.7.14 Updating `~/.julia/environments/v1.11/Project.toml` [ad31a8ef] + ACEfit v0.3.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [ad31a8ef] + ACEfit v0.3.0 [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [d86c1dc8] + ActiveSetPursuit v0.0.4 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [898213cb] + LowRankApprox v0.5.5 [e65ccdef] + LowRankMatrices v1.0.2 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [2dcacdae] + ParallelDataTransfer v0.5.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [29d2ae51] + QRupdate v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3385.8 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 23 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.11/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 1814.2 ms ✓ Combinatorics 581.1 ms ✓ ScientificTypesBase 2489.9 ms ✓ PrettyPrinting 889.7 ms ✓ AbstractFFTs 593.2 ms ✓ LaTeXStrings 756.5 ms ✓ PositiveFactorizations 693.3 ms ✓ QRupdate 2613.9 ms ✓ LinearMaps 762.3 ms ✓ LowRankMatrices 613.8 ms ✓ ExprTools 539.7 ms ✓ IteratorInterfaceExtensions 693.3 ms ✓ StatsAPI 1119.6 ms ✓ ADTypes 520.6 ms ✓ UnPack 1668.3 ms ✓ FillArrays 913.0 ms ✓ Statistics 684.8 ms ✓ ShowCases 4370.5 ms ✓ MacroTools 1189.7 ms ✓ OrderedCollections 882.2 ms ✓ Requires 898.8 ms ✓ DataValueInterfaces 1229.5 ms ✓ EnumX 1045.0 ms ✓ StableRNGs 623.0 ms ✓ Reexport 1142.3 ms ✓ DocStringExtensions 1104.7 ms ✓ InlineStrings 1402.1 ms ✓ IrrationalConstants 474.2 ms ✓ UnsafePointers 775.5 ms ✓ URIs 428.4 ms ✓ SimpleBufferStream 429.1 ms ✓ PtrArrays 732.9 ms ✓ TranscodingStreams 725.3 ms ✓ NaNMath 603.4 ms ✓ DelimitedFiles 589.1 ms ✓ ParallelDataTransfer 480.2 ms ✓ InvertedIndices 602.7 ms ✓ ConstructionBase 502.8 ms ✓ DataAPI 1464.7 ms ✓ Crayons 442.7 ms ✓ FastClosures 552.4 ms ✓ BitFlags 635.3 ms ✓ ComputationalResources 545.7 ms ✓ Nullables 572.7 ms ✓ StaticArraysCore 990.0 ms ✓ SuiteSparse 1562.6 ms ✓ ConcurrentUtilities 1627.3 ms ✓ ProgressMeter 1797.8 ms ✓ SentinelArrays 1486.1 ms ✓ StructTypes 1724.8 ms ✓ MbedTLS 793.5 ms ✓ Scratch 958.7 ms ✓ LoggingExtras 1054.2 ms ✓ Preferences 1045.0 ms ✓ Compat 743.2 ms ✓ Pidfile 1091.0 ms ✓ ExceptionUnwrapping 1029.4 ms ✓ StatisticalTraits 2963.8 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1620.9 ms ✓ LinearMaps → LinearMapsSparseArraysExt 3000.0 ms ✓ TimerOutputs 618.3 ms ✓ TableTraits 2044.0 ms ✓ DifferentiationInterface 1492.7 ms ✓ FillArrays → FillArraysSparseArraysExt 794.3 ms ✓ LowRankMatrices → LowRankMatricesFillArraysExt 4577.4 ms ✓ FixedPointNumbers 1267.8 ms ✓ Distances 1088.0 ms ✓ Statistics → SparseArraysExt 984.3 ms ✓ EarlyStopping 643.6 ms ✓ LinearMaps → LinearMapsStatisticsExt 725.4 ms ✓ FillArrays → FillArraysStatisticsExt 1377.3 ms ✓ CommonSubexpressions 3147.9 ms ✓ DataStructures 742.4 ms ✓ Parameters 843.2 ms ✓ Adapt 2213.4 ms ✓ LossFunctions 1437.8 ms ✓ LogExpFunctions 1073.4 ms ✓ AliasTables 823.5 ms ✓ CodecZlib 678.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 673.4 ms ✓ ADTypes → ADTypesConstructionBaseExt 840.1 ms ✓ PooledArrays 777.6 ms ✓ Missings 669.3 ms ✓ DiffResults 1602.0 ms ✓ PDMats 681.3 ms ✓ RelocatableFolders 876.5 ms ✓ JLLWrappers 771.8 ms ✓ PrecompileTools 901.0 ms ✓ Compat → CompatLinearAlgebraExt 3601.7 ms ✓ MLJModelInterface 4066.3 ms ✓ LinearOperators 1467.8 ms ✓ Tables 1103.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 2794.3 ms ✓ ColorTypes 1224.8 ms ✓ Distances → DistancesSparseArraysExt 3080.0 ms ✓ IterationControl 861.8 ms ✓ SortingAlgorithms 1941.2 ms ✓ QuadGK 1012.8 ms ✓ Adapt → AdaptSparseArraysExt 935.4 ms ✓ ArrayInterface 2988.0 ms ✓ Setfield 6589.5 ms ✓ CategoricalArrays 1140.9 ms ✓ FillArrays → FillArraysPDMatsExt 1133.1 ms ✓ OpenSSL_jll 1105.7 ms ✓ Rmath_jll 3270.7 ms ✓ IntelOpenMP_jll 3377.2 ms ✓ oneTBB_jll 3437.9 ms ✓ micromamba_jll 3515.6 ms ✓ pixi_jll 1158.7 ms ✓ FFTW_jll 1124.8 ms ✓ OpenSpecFun_jll 13386.9 ms ✓ StaticArrays 2976.0 ms ✓ RecipesBase 3555.8 ms ✓ StringManipulation 19888.9 ms ✓ Parsers 1560.6 ms ✓ FilePathsBase 1075.8 ms ✓ ColorTypes → StyledStringsExt 3700.5 ms ✓ StatsBase 876.7 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 511.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 671.4 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 731.8 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 684.0 ms ✓ LossFunctions → LossFunctionsCategoricalArraysExt 3220.2 ms ✓ OpenSSL 1277.4 ms ✓ Rmath 13447.0 ms ✓ MKL_jll 7572.5 ms ✓ MicroMamba 6047.8 ms ✓ SpecialFunctions 1363.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1467.6 ms ✓ FillArrays → FillArraysStaticArraysExt 1233.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1249.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1205.1 ms ✓ Adapt → AdaptStaticArraysExt 3537.5 ms ✓ IterativeSolvers 1957.9 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 28751.8 ms ✓ PrettyTables 12922.6 ms ✓ JSON3 3931.3 ms ✓ JSON 1121.3 ms ✓ InlineStrings → ParsersExt 4901.9 ms ✓ ARFFFiles 809.6 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2112.7 ms ✓ FilePathsBase → FilePathsBaseTestExt 1664.1 ms ✓ LatinHypercubeSampling 913.2 ms ✓ PDMats → StatsBaseExt 1125.0 ms ✓ FiniteDiff 28801.3 ms ✓ HTTP 6811.6 ms ✓ FFTW 2476.8 ms ✓ HypergeometricFunctions 1313.1 ms ✓ DiffRules 81203.3 ms ✓ DataFrames 12347.5 ms ✓ CondaPkg 1469.9 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1300.4 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1501.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1204.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3640.7 ms ✓ MLFlowClient 3891.7 ms ✓ LowRankApprox 3234.6 ms ✓ StatsFuns 7150.5 ms ✓ ForwardDiff 4740.2 ms ✓ ActiveSetPursuit 26368.8 ms ✓ PythonCall 7000.6 ms ✓ OpenML 9430.8 ms ✓ Distributions 1899.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1474.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 46777.3 ms ✓ PythonCall → CategoricalArraysExt 22281.0 ms ✓ MLJScikitLearnInterface 2670.8 ms ✓ Distributions → DistributionsTestExt 7399.0 ms ✓ ScientificTypes 1939.5 ms ✓ NLSolversBase 6552.0 ms ✓ CategoricalDistributions 2278.0 ms ✓ LineSearches 25125.8 ms ✓ MLJModels 25199.2 ms ✓ MLJBase 5740.8 ms ✓ Optim 9901.0 ms ✓ MLJIteration 8012.1 ms ✓ MLJFlow 9319.1 ms ✓ MLJTuning 8269.3 ms ✓ MLJEnsembles 7820.1 ms ✓ MLJLinearModels 6001.1 ms ✓ ACEfit 13122.4 ms ✓ MLJ 18628.1 ms ✓ ACEfit → ACEfit_PythonCall_ext 17597.5 ms ✓ ACEfit → ACEfit_MLJLinearModels_ext 38543.7 ms ✓ ACEfit → ACEfit_MLJScikitLearnInterface_ext 184 dependencies successfully precompiled in 794 seconds. 38 already precompiled. 5 dependencies had output during precompilation: ┌ ACEfit │ WARNING: using LinearAlgebra.QR in module ACEfit conflicts with an existing identifier. └ ┌ MicroMamba │ Downloading artifact: micromamba └ ┌ PythonCall → CategoricalArraysExt │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/xHP4R/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/ACEfit/IRtHL/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Resolving changes │ + libstdcxx │ + libstdcxx-ng │ + openssl │ + python │ + scikit-learn │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_MvkHr3/.CondaPkg │ ✔ Created /tmp/jl_MvkHr3/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_MvkHr3/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ libstdcxx = ">=3.4,<14.0" │ │ libstdcxx-ng = ">=3.4,<14.0" │ │ │ │ [dependencies.scikit-learn] │ │ channel = "conda-forge" │ │ version = ">=1.4, <1.6" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.8" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "strict" │ └ description = "automatically generated by CondaPkg.jl" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_MvkHr3/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ ┌ CondaPkg │ Downloading artifact: pixi └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 807.81s ################################################################################ # Testing # Testing ACEfit ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_nXwqKJ/Project.toml` [ad31a8ef] ACEfit v0.3.0 ⌃ [add582a8] MLJ v0.19.5 ⌃ [6ee0df7b] MLJLinearModels v0.9.2 [5ae90465] MLJScikitLearnInterface v0.7.0 [6099a3de] PythonCall v0.9.31 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nXwqKJ/Manifest.toml` [ad31a8ef] ACEfit v0.3.0 [47edcb42] ADTypes v1.21.0 ⌃ [da404889] ARFFFiles v1.5.0 [621f4979] AbstractFFTs v1.5.0 [d86c1dc8] ActiveSetPursuit v0.0.4 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [d1d4a3ce] BitFlags v0.1.9 ⌅ [324d7699] CategoricalArrays v0.10.9 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Test committee creation with bayesian_ridge_regression_svd. ┌ Warning: Why is such a large committee required? └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_bayesianlinear.jl:8 [ Info: Entering bayesian_linear_regression_svd ┌ Info: Computing SVD of (3, 3) matrix │ BLAS.get_num_threads() = 1 │ BLAS.get_config() = │ LinearAlgebra.BLAS.LBTConfig │ Libraries: └ └ [ILP64] libopenblas64_.so [ Info: SVD completed after 5.128116666666667e-6 minutes [ Info: Beginning to maximize marginal likelihood ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Info: Optimization complete │ Results = │ * Status: success │ │ * Candidate solution │ Final objective value: 4.244509e+00 │ │ * Found with │ Algorithm: L-BFGS │ │ * Convergence measures │ |x - x'| = 2.29e-09 ≤ 1.0e-08 │ |x - x'|/|x'| = 2.42e-09 ≰ 0.0e+00 │ |f(x) - f(x')| = 0.00e+00 ≤ 0.0e+00 │ |f(x) - f(x')|/|f(x')| = 0.00e+00 ≤ 0.0e+00 │ |g(x)| = 8.72e-15 ≰ 0.0e+00 │ │ * Work counters │ Seconds run: 1 (vs limit Inf) │ Iterations: 10 │ f(x) calls: 26 │ ∇f(x) calls: 26 └ [ Info: Test error from invalid committee request. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/xHP4R/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/ACEfit/IRtHL/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml CondaPkg Resolving changes + libstdcxx + libstdcxx-ng + openssl + python + scikit-learn CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_nXwqKJ/.CondaPkg ✔ Created /tmp/jl_nXwqKJ/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_nXwqKJ/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<14.0" │ libstdcxx-ng = ">=3.4,<14.0" │ │ [dependencies.scikit-learn] │ channel = "conda-forge" │ version = ">=1.4, <1.6" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.8" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_nXwqKJ/.CondaPkg/pixi.toml ✔ The default environment has been installed. [ Info: Test Solver on overdetermined system [ Info: ... QR norm(A * C - y) = 9.94085130261072e-6 norm(C) = 9.807777387369773 norm(C - c_ref) = 0.00032917802331903595 [ Info: ... regularised QR, λ = 1e-5 norm(A * C - y) = 1.08502129596582e-5 norm(C) = 9.799903430116379 norm(C - c_ref) = 0.043764413121745525 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:42 Expression: norm(C - c_ref) < 1000 * epsn Evaluated: 0.043764413121745525 < 0.01 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [3] include(fname::String) @ Main ./sysimg.jl:38 [4] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [8] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [ Info: ... regularised QR, λ = 1e-2 norm(A * C - y) = 0.02698003797359899 norm(C) = 9.14760750932759 norm(C - c_ref) = 2.9382325453102864 [ Info: ... RRQR, rtol = 1e-15 norm(A * C - y) = 9.94085130261123e-6 norm(C) = 9.807777387369809 norm(C - c_ref) = 0.00032917802314707455 [ Info: ... RRQR, rtol = 1e-5 norm(A * C - y) = 9.940851302613385e-6 norm(C) = 9.80777738736989 norm(C - c_ref) = 0.0003291780227098812 [ Info: ... RRQR, rtol = 1e-3 norm(A * C - y) = 0.0004843513026535288 norm(C) = 9.63995338646449 norm(C - c_ref) = 1.8118858943858085 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:94 Expression: norm(C - c_ref) < 1 Evaluated: 1.8118858943858085 < 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [3] include(fname::String) @ Main ./sysimg.jl:38 [4] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [8] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [ Info: ... LSQR ┌ Warning: Need to apply preconditioner in LSQR. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:95 damp 0 atol 1.0e-6 maxiter 100000 Converged after 337 iterations. relative RMS error 2.5954017876890194e-5 norm(A * C - y) = 9.971580085941762e-5 norm(C) = 9.721785688161276 norm(C - c_ref) = 0.5516076747191707 [ Info: ... SKLEARN_BRR ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:132 [ Info: Entering SKLEARN_BRR [ Info: BRR converged to tol=0.001 after 6 iterations. norm(A * C - y) = 1.06080397623999e-5 norm(C) = 9.80105946477357 norm(C - c_ref) = 0.037320059544272456 [ Info: ... SKLEARN_ARD ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:148 [ Info: ARD converged to tol=0.001 after 7 iterations. norm(A * C - y) = 0.0063859125470618954 norm(C) = 9.464728595977643 norm(C - c_ref) = 1.6812932370993519 [ Info: ... BLR ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Iter Function value Gradient norm 0 9.201622e+03 9.980736e+03 * time: 0.10214900970458984 1 -6.792193e+02 2.682194e+04 * time: 1.8718559741973877 2 -4.344267e+03 3.873060e+04 * time: 1.8749089241027832 3 -1.369916e+04 9.912699e+04 * time: 1.8800280094146729 4 -1.940147e+04 1.760110e+05 * time: 1.8821189403533936 5 -2.527239e+04 3.181240e+05 * time: 1.8852078914642334 6 -3.007816e+04 5.165689e+05 * time: 1.8884239196777344 7 -4.388518e+04 2.080534e+06 * time: 1.8916099071502686 8 -7.655005e+04 4.633139e+07 * time: 1.8978009223937988 9 -7.891878e+04 4.944824e+07 * time: 1.9192190170288086 10 -8.202875e+04 1.389405e+07 * time: 1.921720027923584 11 -8.212926e+04 7.455516e+04 * time: 1.923799991607666 12 -8.212926e+04 5.510780e+00 * time: 1.9259119033813477 13 -8.212926e+04 3.893976e+04 * time: 1.9394540786743164 14 -8.212934e+04 3.188082e+03 * time: 1.9443728923797607 15 -8.212934e+04 1.604272e+02 * time: 1.9465038776397705 16 -8.212934e+04 3.882239e-02 * time: 1.9485459327697754 17 -8.212934e+04 1.532279e-04 * time: 1.9515879154205322 * Status: success * Candidate solution Final objective value: -8.212934e+04 * Found with Algorithm: L-BFGS * Convergence measures |x - x'| = 4.62e-09 ≤ 1.0e-08 |x - x'|/|x'| = 4.76e-09 ≰ 0.0e+00 |f(x) - f(x')| = 1.08e-07 ≰ 0.0e+00 |f(x) - f(x')|/|f(x')| = 1.32e-12 ≰ 0.0e+00 |g(x)| = 1.53e-04 ≰ 0.0e+00 * Work counters Seconds run: 2 (vs limit Inf) Iterations: 17 f(x) calls: 90 ∇f(x) calls: 90 norm(A * C - y) = 9.326182631411448e-5 norm(C) = 9.68074645917116 norm(C - c_ref) = 0.925233148130084 [ Info: ... TruncatedSVD(; rtol = 1e-5) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 9.940851302600409e-6 norm(C) = 9.807777387369898 norm(C - c_ref) = 0.00032917802264372344 [ Info: ... TruncatedSVD(; rtol = 1e-4) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 0.00017990008272596828 norm(C) = 9.641886504008573 norm(C - c_ref) = 1.7965692571672676 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:165 Expression: norm(A * C - y) < 10 * epsn Evaluated: 0.00017990008272596828 < 0.0001 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [3] include(fname::String) @ Main ./sysimg.jl:38 [4] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [8] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:166 Expression: norm(C - c_ref) < 1 Evaluated: 1.7965692571672676 < 1 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [3] include(fname::String) @ Main ./sysimg.jl:38 [4] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [8] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [ Info: Truncated SVD with validation err_v = norm(Av * results_v["C"] - yv) = 4.573667541923179e-6 err = norm(Av * results["C"] - yv) = 8.144681778548308e-5 norm(results_v["C"] - c_ref) = 0.00010430576387307892 norm(results["C"] - c_ref) = 1.7965692571672676 [ Info: Test Solver on overdetermined system ┌ Warning: Assignment to `solver` in soft scope is ambiguous because a global variable by the same name exists: `solver` will be treated as a new local. Disambiguate by using `local solver` to suppress this warning or `global solver` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:32 ┌ Warning: Assignment to `results` in soft scope is ambiguous because a global variable by the same name exists: `results` will be treated as a new local. Disambiguate by using `local results` to suppress this warning or `global results` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:33 Test PassedTest PassedTest PassedTest PassedTest PassedTest Passedselect = :final [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:byerror, 1.3) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:bysize, 73) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = :final ┌ Warning: OMP: tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:115 ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 select = (:byerror, 1.3) ┌ Warning: OMP: tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:115 ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 select = (:bysize, 73) ┌ Warning: OMP: tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:115 ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 [ Info: All tests completed for ASP and OMP solvers. [ Info: Test MLJ interface on overdetermined system [ Info: ... MLJLinearModels LinearRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LinearRegressor(fit_intercept = true, …), …). ┌ Info: Solver: MLJLinearModels.Analytical │ iterative: Bool false └ max_inner: Int64 200 norm(A * C - y) = 99.75215187386185 norm(C) = 10.163251684234465 [ Info: ... MLJLinearModels LassoRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LassoRegressor(lambda = 1.0, …), …). ┌ Info: Solver: MLJLinearModels.ProxGrad │ accel: Bool true │ max_iter: Int64 1000 │ tol: Float64 0.0001 │ max_inner: Int64 100 └ beta: Float64 0.8 norm(A * C - y) = 100.25169759618997 norm(C) = 0.0 [ Info: ... MLJ SKLearn ARD [ Info: For silent loading, specify `verbosity=0`. import MLJScikitLearnInterface ✔ [ Info: Training machine(ARDRegressor(max_iter = 300, …), …). norm(A * C - y) = 99.91731294468195 norm(C) = 6.14785985306709 Test Summary: | Pass Fail Total Time ACEfit.jl | 55 4 59 6m47.3s Iterate | 0 0.0s Bayesian Linear | 3 3 40.7s Linear Solvers | 18 4 22 1m55.9s ASP | 34 34 2m58.7s MLJ Solvers | 0 1m11.9s ERROR: LoadError: Some tests did not pass: 55 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/runtests.jl:4 Testing failed after 424.31s ERROR: LoadError: Package ACEfit errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1315.66s: package has test failures