Package evaluation of StructuralIdentifiability on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T05:09:18.091 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.81s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.44.13 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.49.5 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 ⌅ [e134572f] + FLINT_jll v300.200.201+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 237.41s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_FtOz7d/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_FtOz7d/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e134572f] FLINT_jll v300.200.201+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 8797.2 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 9 seconds. 18 already precompiled. Resolving package versions... Updating `/tmp/jl_FtOz7d/Project.toml` ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.22.0 Updating `/tmp/jl_FtOz7d/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.3.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.189.1 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.22.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v1.14.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.4.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.117.1 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.1 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.43 [19f23fe9] + SymbolicLimits v0.2.3 ⌃ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.54.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.24.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_FtOz7d/Project.toml` [0c5d862f] + Symbolics v6.54.0 No packages added to or removed from `/tmp/jl_FtOz7d/Manifest.toml` Precompiling packages... 1529.6 ms ✓ CommonSubexpressions 1008.4 ms ✓ PoissonRandom 1414.4 ms ✓ MaybeInplace 3673.8 ms ✓ SciMLOperators 1677.3 ms ✓ TruncatedStacktraces 2256.6 ms ✓ SimpleTraits 3790.7 ms ✓ DispatchDoctor 1742.6 ms ✓ Rmath_jll 15001.7 ms ✓ CommonMark 2197.4 ms ✓ PreallocationTools 3544.7 ms ✓ CPUSummary 8087.3 ms ✓ MultivariatePolynomials 1407.0 ms ✓ Ghostscript_jll 1427.3 ms ✓ ResettableStacks 4962.2 ms ✓ DomainSets 1421.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1557.2 ms ✓ Accessors → StaticArraysExt 1700.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 2401.1 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 6696.1 ms ✓ RecursiveArrayTools 887.2 ms ✓ BitTwiddlingConvenienceFunctions 2465.2 ms ✓ HypergeometricFunctions 1147.1 ms ✓ CloseOpenIntervals 1352.7 ms ✓ LayoutPointers 10333.2 ms ✓ ForwardDiff 1560.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1638.0 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2036.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 13458.6 ms ✓ Graphs 13406.8 ms ✓ DynamicQuantities 1449.5 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 1696.6 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 2391.1 ms ✓ Rmath 63933.9 ms ✓ JuliaFormatter 5347.3 ms ✓ DynamicPolynomials 7535.8 ms ✓ Latexify 1625.1 ms ✓ DomainSets → DomainSetsRandomExt 1833.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 2111.6 ms ✓ PolyesterWeave 2707.1 ms ✓ StrideArraysCore 4589.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3561.1 ms ✓ FastPower → FastPowerForwardDiffExt 1476.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2549.1 ms ✓ Unitful → ForwardDiffExt 1255.7 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 12143.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 30737.3 ms ✓ SciMLBase 4106.1 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1681.1 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 3225.9 ms ✓ StatsFuns 75323.6 ms ✓ SymbolicUtils 3519.5 ms ✓ Latexify → SparseArraysExt 3681.0 ms ✓ Polyester 8133.6 ms ✓ NLSolversBase 4023.3 ms ✓ SciMLBase → SciMLBaseMLStyleExt 3292.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 6479.9 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 9415.3 ms ✓ SciMLJacobianOperators 3826.5 ms ✓ SCCNonlinearSolve 1907.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3028.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 8790.2 ms ✓ Distributions 9402.5 ms ✓ SymbolicLimits 3350.9 ms ✓ FastBroadcast 7581.6 ms ✓ LineSearches 11524.1 ms ✓ LineSearch 16766.0 ms ✓ NonlinearSolveBase 6211.7 ms ✓ Distributions → DistributionsTestExt 3491.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 5007.7 ms ✓ SciMLBase → SciMLBaseDistributionsExt 31207.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 11185.8 ms ✓ Optim 80195.9 ms ✓ LineSearch → LineSearchLineSearchesExt 27636.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4383.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 3456.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 10767.6 ms ✓ BracketingNonlinearSolve 132771.6 ms ✓ Symbolics 11789.8 ms ✓ DiffEqBase 44241.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 13844.2 ms ✓ Symbolics → SymbolicsForwardDiffExt 10612.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 4242.0 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 5075.5 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 7972.2 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4564.1 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 10631.7 ms ✓ DiffEqCallbacks 10704.8 ms ✓ OrdinaryDiffEqCore 18146.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 21089.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 60844.8 ms ✓ SimpleNonlinearSolve 10568.6 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 133257.0 ms ✓ DiffEqNoiseProcess 39627.0 ms ✓ JumpProcesses 16806.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 94043.8 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 3986.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 13116.1 ms ✓ ImplicitDiscreteSolve Info Given ModelingToolkit was explicitly requested, output will be shown live  ┌ Warning: `enqueue!(q::Queue, x)` is deprecated, use `Base.push!(q, x)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:429 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:429 ┌ Warning: `dequeue!(q::Queue)` is deprecated, use `Base.popfirst!(q)` instead. │ caller = topsort_equations(eqs::Vector{Symbolics.Equation}, unknowns::Vector{SymbolicUtils.BasicSymbolic}; check::Bool) at alias_elimination.jl:436 └ @ Core ~/.julia/packages/ModelingToolkit/H1QXB/src/systems/alias_elimination.jl:436 744328.0 ms ✓ ModelingToolkit 99 dependencies successfully precompiled in 2050 seconds. 173 already precompiled. 3 dependencies had output during precompilation: ┌ JumpProcesses │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ ModelingToolkit │ [Output was shown above] └ Precompiling packages... 4421.1 ms ✓ DataStructures 11664.1 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 2 dependencies successfully precompiled in 17 seconds. 44 already precompiled. 1 dependency precompiled but a different version is currently loaded. Restart julia to access the new version. Otherwise, loading dependents of this package may trigger further precompilation to work with the unexpected version. Precompiling packages... Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 128476.3 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 130 seconds. 160 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ Precompiling packages... 23513.6 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 25 seconds. 165 already precompiled. Precompiling packages... 44735.0 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 47 seconds. 273 already precompiled. Precompiling packages... Info Given ModelingToolkitSIExt was explicitly requested, output will be shown live   ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 993 running 1 of 1  signal (10): User defined signal 1 egal_types at /source/src/builtins.c:224 egal_types at /source/src/builtins.c:183 ijl_types_equal at /source/src/subtype.c:2323 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4206 jl_restore_package_image_from_stream at /source/src/staticdata.c:4414 ijl_restore_incremental at /source/src/staticdata.c:4496 #_include_from_serialized#862 at ./loading.jl:1274 _include_from_serialized at ./loading.jl:1246 [inlined] #_require_search_from_serialized#878 at ./loading.jl:2074 _require_search_from_serialized at ./loading.jl:1981 [inlined] __require_prelocked at ./loading.jl:2599 _require_prelocked at ./loading.jl:2465 macro expansion at ./loading.jl:2393 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2358 jfptr___require_63569.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:894 require at ./loading.jl:2334 jfptr_require_102915.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] call_require at /source/src/toplevel.c:494 [inlined] eval_import_path at /source/src/toplevel.c:532 jl_toplevel_eval_flex at /source/src/toplevel.c:830 ijl_toplevel_eval at /source/src/toplevel.c:1047 eval_body at /source/src/interpreter.c:655 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:814 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:305 include_package_for_output at ./loading.jl:2997 jfptr_include_package_for_output_99448.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 include_string at ./loading.jl:2853 [inlined] exec_options at ./client.jl:319 _start at ./client.jl:554 jfptr__start_103313.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70e5017ee249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 39 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 unknown function (ip: 0x7544a7f3d32f) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_88991.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2445 unknown function (ip: 0x73fde8d83f43) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #204 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2385 withenv at ./env.jl:265 #189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2204 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2062 #185 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2171 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x73fde8d70b6c) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#181 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2118 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2110 unknown function (ip: 0x73fde8d6f5b9) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#192 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2370 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:462 unknown function (ip: 0x73fde8d6f1f1) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x73fde8d6b550) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x73fde8d6406f) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:305 exec_options at ./client.jl:321 _start at ./client.jl:554 jfptr__start_103313.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73fe04fed249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000073fdeadfc010 Total snapshots: 99. Utilization: 0% ╎99 @Base/client.jl:554 _start() ╎ 99 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 99 @Base/Base.jl:305 include(mod::Module, _path::String) ╎ 99 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _path:… ╎ 99 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), mod:… ╎ 99 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 99 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 99 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 99 @Pkg/src/API.jl:152 test ╎ ╎ 99 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.Pai… ╎ ╎ 99 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 99 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOCon… ╎ ╎ ╎ 99 @Pkg/src/API.jl:462 kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 99 @Pkg/src/API.jl:483 test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 99 @Pkg/…perations.jl:2280 test ╎ ╎ ╎ 99 @Pkg/…perations.jl:2370 test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 99 @Pkg/…erations.jl:2110 kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 99 @Pkg/…erations.jl:2118 #sandbox#181 ╎ ╎ ╎ ╎ 99 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 99 @Base/file.jl:895 mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 99 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 99 @Pkg/…ations.jl:2171 (::Pkg.Operations.var"#185#186… ╎ ╎ ╎ ╎ ╎ 99 @Pkg/…ations.jl:2062 with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 99 @Pkg/…tions.jl:2204 (::Pkg.Operations.var"#189#19… ╎ ╎ ╎ ╎ ╎ 99 @Base/env.jl:265 withenv(::Pkg.Operations.var"#2… ╎ ╎ ╎ ╎ ╎ 99 @Pkg/…tions.jl:2385 (::Pkg.Operations.var"#204#… ╎ ╎ ╎ ╎ ╎ ╎ 99 @Pkg/…ions.jl:2445 subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…ess.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…ess.jl:694 wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…on.jl:141 wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…sk.jl:1199 wait() 98╎ ╎ ╎ ╎ ╎ ╎ ╎ 99 @Base/…sk.jl:1187 poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:331 #start_profile_listener##0 at ./Base.jl:351 jfptr_YY.start_profile_listenerYY.YY.0_45490.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 22960784 (Pool: 22960187; Big: 597); GC: 21 [39] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:79 _ZN4llvm17SimpleCaptureInfo19isNotCapturedBeforeEPKNS_5ValueEPKNS_11InstructionEb at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13BasicAAResult13getModRefInfoEPKNS_8CallBaseERKNS_14MemoryLocationERNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm9AAResults13getModRefInfoEPKNS_8CallBaseERKNS_14MemoryLocationERNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm9AAResults13getModRefInfoEPKNS_11InstructionERKSt8optionalINS_14MemoryLocationEERNS_11AAQueryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _Z24instructionClobbersQueryIN4llvm14BatchAAResultsEEbPKNS0_9MemoryDefERKNS0_14MemoryLocationEPKNS0_11InstructionERT_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_113ClobberWalker11findClobberERN4llvm14BatchAAResultsEPNS1_12MemoryAccessERNS_18UpwardsMemoryQueryERj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm9MemorySSA13CachingWalker25getClobberingMemoryAccessEPNS_12MemoryAccessERKNS_14MemoryLocationERNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13MemCpyOptPass13processMemCpyEPNS_10MemCpyInstERNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1EEELb0ELb0EEE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13MemCpyOptPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13MemCpyOptPass7runImplERNS_8FunctionEPNS_17TargetLibraryInfoEPNS_9AAResultsEPNS_15AssumptionCacheEPNS_13DominatorTreeEPNS_17PostDominatorTreeEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13MemCpyOptPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3520 _jl_invoke at /source/src/gf.c:3997 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 profile_printing_listener at ./Base.jl:333 #start_profile_listener##0 at ./Base.jl:351 jfptr_YY.start_profile_listenerYY.YY.0_45490.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 65681215 (Pool: 65678787; Big: 2428); GC: 55 PkgEval terminated after 2740.2s: test duration exceeded the time limit