Package evaluation of RecurrenceAnalysis on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T07:43:39.853 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.14s ################################################################################ # Installation # Installing RecurrenceAnalysis... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [639c3291] + RecurrenceAnalysis v2.1.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.13.1 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [639c3291] + RecurrenceAnalysis v2.1.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [40b095a5] + StateSpaceSets v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [62fd8b95] + TensorCore v0.1.1 [b8865327] + UnicodePlots v3.8.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 Installation completed after 4.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 20.8s ################################################################################ # Testing # Testing RecurrenceAnalysis Status `/tmp/jl_ErGJbr/Project.toml` [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [86223c79] Graphs v1.13.1 [639c3291] RecurrenceAnalysis v2.1.2 [10745b16] Statistics v1.11.1 [f43a241f] Downloads v1.6.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ErGJbr/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [86223c79] Graphs v1.13.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [299715c1] MarchingCubes v0.1.11 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.22 [645ca80c] Neighborhood v0.2.4 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [639c3291] RecurrenceAnalysis v2.1.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [40b095a5] StateSpaceSets v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [62fd8b95] TensorCore v0.1.1 [b8865327] UnicodePlots v3.8.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 Testing Running tests... running test file rmatrix_analytic.jl running test file rqa_rna_analytic.jl ┌ Warning: `dequeue!(q::PriorityQueue)` is deprecated, use `(Base.popfirst!(q)).first` instead. │ caller = dijkstra_shortest_paths(g::Graphs.SimpleGraphs.SimpleGraph{Int64}, srcs::Vector{Int64}, distmx::Graphs.DefaultDistance; allpaths::Bool, trackvertices::Bool, maxdist::Int64) at dijkstra.jl:98 └ @ Core ~/.julia/packages/Graphs/rEutM/src/shortestpaths/dijkstra.jl:98 ┌ Warning: Infinite path length detected for vertex 1 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 2 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 3 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 4 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 5 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 6 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 7 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 8 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 9 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 ┌ Warning: Infinite path length detected for vertex 10 └ @ Graphs ~/.julia/packages/Graphs/rEutM/src/distance.jl:78 running test file skeletontest.jl Precompiling packages... 7159.9 ms ✓ Distributions 3231.1 ms ✓ Distributions → DistributionsTestExt 4804.3 ms ✓ DelayEmbeddings 3 dependencies successfully precompiled in 17 seconds. 55 already precompiled. Skeletonized sinusoidal recurrence structures: Error During Test at /home/pkgeval/.julia/packages/RecurrenceAnalysis/TWAYI/test/skeletontest.jl:6 Got exception outside of a @test MethodError: no method matching StateSpaceSet{3, Float64, SVector{3, Float64}, Nothing}(::Vector{SVector{3, Float64}}) The type `StateSpaceSet{3, Float64, SVector{3, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/bocXW/src/statespaceset_concrete.jl:67 Stacktrace: [1] (StateSpaceSet{3, Float64})(v::Vector{SVector{3, Float64}}; names::Nothing) @ StateSpaceSets ~/.julia/packages/StateSpaceSets/bocXW/src/statespaceset_concrete.jl:79 [2] (StateSpaceSet{3, Float64})(v::Vector{SVector{3, Float64}}) @ StateSpaceSets ~/.julia/packages/StateSpaceSets/bocXW/src/statespaceset_concrete.jl:79 [3] embed(s::Vector{Float64}, de::DelayEmbedding{2, Nothing}) @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/embeddings/embed.jl:127 [4] embed(s::Vector{Float64}, d::Int64, τ::Int64, h::Nothing) @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/embeddings/embed.jl:118 [5] embed(s::Vector{Float64}, d::Int64, τ::Int64) @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/embeddings/embed.jl:113 [6] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/skeletontest.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/skeletontest.jl:8 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [10] IncludeInto @ ./Base.jl:307 [inlined] [11] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:6 [inlined] [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [13] testfile(file::String, testname::String) @ Main ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:6 [14] testfile(file::String) @ Main ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:5 [15] top-level scope @ ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:12 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [17] macro expansion @ ~/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:14 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [19] top-level scope @ none:6 [20] eval(m::Module, e::Any) @ Core ./boot.jl:489 [21] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [22] _start() @ Base ./client.jl:554 running test file windowtest.jl Test Summary: | Pass Error Total Time RecurrenceAnalysis tests | 120 1 121 1m04.8s Rmatrix analytic | 26 26 15.4s Rqa rna analytic | 76 76 18.3s Skeletontest | 1 1 24.1s Skeletonized sinusoidal recurrence structures | 1 1 5.3s Windowtest | 18 18 5.5s RNG of the outermost testset: Random.Xoshiro(0x2f87edb199d6ac7f, 0x03d26b4737096a4b, 0x23e47b14ac5f3fbc, 0xba81720e99f46c71, 0x07ffb554d27e2123) ERROR: LoadError: Some tests did not pass: 120 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RecurrenceAnalysis/TWAYI/test/runtests.jl:11 Testing failed after 84.67s ERROR: LoadError: Package RecurrenceAnalysis errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 136.7s: package tests unexpectedly errored