Package evaluation of ProteinChains on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T11:19:14.449 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.02s ################################################################################ # Installation # Installing ProteinChains... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b8e8f2a5] + ProteinChains v0.7.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [8ed43e74] + AssigningSecondaryStructure v0.5.1 [a9b6321e] + Atomix v1.1.2 [9ac9c2a2] + Backboner v0.12.2 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.6.1 [3c28c6f8] + BioSymbols v5.2.0 [c3b6d118] + BitIntegers v0.3.5 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [e139c391] + DynamicStructs v0.2.3 [5789e2e9] + FileIO v1.17.0 [1fa38f19] + Format v1.3.7 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v0.21.4 [63c18a36] + KernelAbstractions v0.9.38 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [872c559c] + NNlib v0.9.31 [b8a86587] + NearestNeighbors v0.4.22 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [b8e8f2a5] + ProteinChains v0.7.3 [94ee1d12] + Quaternions v0.7.6 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.5.0 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.24.0 [013be700] + UnsafeAtomics v0.3.0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.77s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 153.31s ################################################################################ # Testing # Testing ProteinChains Status `/tmp/jl_wICxGM/Project.toml` [8ed43e74] AssigningSecondaryStructure v0.5.1 [9ac9c2a2] Backboner v0.12.2 [de9282ab] BioStructures v4.6.1 [c3b6d118] BitIntegers v0.3.5 [34da2185] Compat v4.18.0 [e139c391] DynamicStructs v0.2.3 [86223c79] Graphs v1.13.1 [f67ccb44] HDF5 v0.17.2 [842dd82b] InlineStrings v1.4.5 ⌅ [033835bb] JLD2 v0.5.15 [682c06a0] JSON v0.21.4 [7b2266bf] PeriodicTable v1.2.1 [b8e8f2a5] ProteinChains v0.7.3 [189a3867] Reexport v1.2.2 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_wICxGM/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [8ed43e74] AssigningSecondaryStructure v0.5.1 [a9b6321e] Atomix v1.1.2 [9ac9c2a2] Backboner v0.12.2 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.6.1 [3c28c6f8] BioSymbols v5.2.0 [c3b6d118] BitIntegers v0.3.5 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.0 [864edb3b] DataStructures v0.19.1 [b4f34e82] Distances v0.10.12 [e139c391] DynamicStructs v0.2.3 [5789e2e9] FileIO v1.17.0 [1fa38f19] Format v1.3.7 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.13.1 [f67ccb44] HDF5 v0.17.2 [076d061b] HashArrayMappedTries v0.2.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [872c559c] NNlib v0.9.31 [b8a86587] NearestNeighbors v0.4.22 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [b8e8f2a5] ProteinChains v0.7.3 [94ee1d12] Quaternions v0.7.6 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [7e506255] ScopedValues v1.5.0 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.24.0 [013be700] UnsafeAtomics v0.3.0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Downloading file from PDB: 1ASS read: Error During Test at /home/pkgeval/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:58 Got exception outside of a @test RequestError: HTTP/1.1 503 Service Unavailable while requesting http://files.rcsb.org/download/1ASS.pdb.gz Stacktrace: [1] #4 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:271 [inlined] [2] open(f::Downloads.var"#4#5"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:410 [3] open_nolock @ /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:35 [inlined] [4] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:103 [5] #download#2 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:258 [inlined] [6] download @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:247 [inlined] [7] downloadpdb(pdbid::String; dir::String, format::Type{PDBFormat}, obsolete::Bool, overwrite::Bool, ba_number::Int64) @ BioStructures ~/.julia/packages/BioStructures/TtrcK/src/download.jl:201 [8] pdbentry(pdbid::String; dir::String, format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:55 [9] pdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [inlined] [10] cachedpdbentry(pdbid::String; format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:61 [11] pdbentry(pdbid::String; dir::Nothing, format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:54 [12] top-level scope @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:6 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [14] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:58 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [16] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:59 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [18] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:59 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [23] _start() @ Base ./client.jl:554 [ Info: Downloading file from PDB: 1ASS write: Error During Test at /home/pkgeval/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:65 Got exception outside of a @test RequestError: HTTP/1.1 503 Service Unavailable while requesting http://files.rcsb.org/download/1ASS.cif.gz Stacktrace: [1] #4 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:271 [inlined] [2] open(f::Downloads.var"#4#5"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:410 [3] open_nolock @ /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:35 [inlined] [4] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:103 [5] #download#2 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:258 [inlined] [6] download @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:247 [inlined] [7] downloadpdb(pdbid::String; dir::String, format::Type{MMCIFFormat}, obsolete::Bool, overwrite::Bool, ba_number::Int64) @ BioStructures ~/.julia/packages/BioStructures/TtrcK/src/download.jl:201 [8] pdbentry(pdbid::String; dir::String, format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:55 [9] pdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [inlined] [10] cachedpdbentry(pdbid::String; format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:61 [11] cachedpdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:59 [inlined] [12] #pdbentry#54 @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:54 [inlined] [13] pdbentry(pdbid::String) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [14] top-level scope @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:6 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [16] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:58 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [18] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:66 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [20] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:66 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [25] _start() @ Base ./client.jl:554 [ Info: Downloading file from PDB: 3HFM mmcifutils: Error During Test at /home/pkgeval/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:75 Got exception outside of a @test RequestError: HTTP/1.1 503 Service Unavailable while requesting http://files.rcsb.org/download/3HFM.cif.gz Stacktrace: [1] #4 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:271 [inlined] [2] open(f::Downloads.var"#4#5"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:410 [3] open_nolock @ /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:35 [inlined] [4] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:103 [5] #download#2 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:258 [inlined] [6] download @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:247 [inlined] [7] downloadpdb(pdbid::String; dir::String, format::Type{MMCIFFormat}, obsolete::Bool, overwrite::Bool, ba_number::Int64) @ BioStructures ~/.julia/packages/BioStructures/TtrcK/src/download.jl:201 [8] #pdbentry#54 @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:55 [inlined] [9] pdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [inlined] [10] (::var"#7#8")(dir::String) @ Main ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:77 [11] mktempdir(fn::var"#7#8", parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [12] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [13] top-level scope @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:6 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [15] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:58 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [17] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:76 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [19] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:76 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [24] _start() @ Base ./client.jl:554 [ Info: Downloading file from PDB: 1EYE store: Error During Test at /home/pkgeval/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:88 Got exception outside of a @test RequestError: HTTP/1.1 503 Service Unavailable while requesting http://files.rcsb.org/download/1EYE.cif.gz Stacktrace: [1] #4 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:271 [inlined] [2] open(f::Downloads.var"#4#5"{Nothing, Vector{Pair{String, String}}, Float64, Nothing, Bool, Nothing, Nothing, String}, args::String; kwargs::@Kwargs{write::Bool, lock::Bool}) @ Base ./io.jl:410 [3] open_nolock @ /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:35 [inlined] [4] arg_write(f::Function, arg::String) @ ArgTools /opt/julia/share/julia/stdlib/v1.12/ArgTools/src/ArgTools.jl:103 [5] #download#2 @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:258 [inlined] [6] download @ /opt/julia/share/julia/stdlib/v1.12/Downloads/src/Downloads.jl:247 [inlined] [7] downloadpdb(pdbid::String; dir::String, format::Type{MMCIFFormat}, obsolete::Bool, overwrite::Bool, ba_number::Int64) @ BioStructures ~/.julia/packages/BioStructures/TtrcK/src/download.jl:201 [8] pdbentry(pdbid::String; dir::String, format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:55 [9] pdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [inlined] [10] cachedpdbentry(pdbid::String; format::Type, kws::@Kwargs{}) @ ProteinChains ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:61 [11] cachedpdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:59 [inlined] [12] #pdbentry#54 @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:54 [inlined] [13] pdbentry @ ~/.julia/packages/ProteinChains/8G9xL/src/io/download.jl:53 [inlined] [14] (::var"#9#10")(dir::String) @ Main ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:91 [15] mktempdir(fn::var"#9#10", parent::String; prefix::String) @ Base.Filesystem ./file.jl:899 [16] mktempdir(fn::Function, parent::String) @ Base.Filesystem ./file.jl:895 [17] top-level scope @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [19] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:89 [inlined] [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [21] macro expansion @ ~/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:89 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [26] _start() @ Base ./client.jl:554 Test Summary: | Pass Error Total Time ProteinChains.jl | 23 4 27 1m02.2s atom.jl | 15 15 2.0s properties.jl | 1 1 0.9s chain.jl | 3 3 1.8s structure.jl | 4 4 0.9s io | 3 3 26.3s read | 1 1 25.4s write | 1 1 0.4s mmcifutils | 1 1 0.5s store | 1 1 30.4s RNG of the outermost testset: Random.Xoshiro(0x9ec779d19bea998e, 0xdb7c85f13ecd1aa9, 0xa60a183f5c719858, 0xa1db2827e94c7d21, 0xdc6d9df987a14f28) ERROR: LoadError: Some tests did not pass: 23 passed, 0 failed, 4 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ProteinChains/8G9xL/test/runtests.jl:4 Testing failed after 95.44s ERROR: LoadError: Package ProteinChains errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 287.53s: package tests unexpectedly errored