Package evaluation of PiecewiseDeterministicMarkovProcesses on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T13:04:36.448 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.46s ################################################################################ # Installation # Installing PiecewiseDeterministicMarkovProcesses... Resolving package versions... Installed GPUArraysCore ───────────────────────── v0.2.0 Installed IrrationalConstants ─────────────────── v0.2.4 Installed DiffRules ───────────────────────────── v1.15.1 Installed Adapt ───────────────────────────────── v4.3.0 Installed SIMDTypes ───────────────────────────── v0.1.0 Installed SciMLStructures ─────────────────────── v1.7.0 Installed FastPower ───────────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ────── v0.1.6 Installed MuladdMacro ─────────────────────────── v0.2.4 Installed ArnoldiMethod ───────────────────────── v0.4.0 Installed Functors ────────────────────────────── v0.5.2 Installed StrideArraysCore ────────────────────── v0.5.8 Installed PiecewiseDeterministicMarkovProcesses ─ v0.0.10 Installed FunctionWrappersWrappers ────────────── v0.1.3 Installed Sundials ────────────────────────────── v4.28.0 Installed LayoutPointers ──────────────────────── v0.1.17 Installed CpuId ───────────────────────────────── v0.3.1 Installed SciMLBase ───────────────────────────── v2.117.1 Installed DiffEqBase ──────────────────────────── v6.189.1 Installed Preferences ─────────────────────────── v1.5.0 Installed DiffResults ─────────────────────────── v1.1.0 Installed Accessors ───────────────────────────── v0.1.42 Installed Inflate ─────────────────────────────── v0.1.5 Installed SpecialFunctions ────────────────────── v2.5.1 Installed DiffEqCallbacks ─────────────────────── v4.9.0 Installed RuntimeGeneratedFunctions ───────────── v0.5.15 Installed Jieko ───────────────────────────────── v0.2.1 Installed ADTypes ─────────────────────────────── v1.17.0 Installed CPUSummary ──────────────────────────── v0.2.7 Installed IfElse ──────────────────────────────── v0.1.1 Installed SciMLOperators ──────────────────────── v1.7.1 Installed Moshi ───────────────────────────────── v0.3.7 Installed RecipesBase ─────────────────────────── v1.3.4 Installed Setfield ────────────────────────────── v1.1.2 Installed StaticArraysCore ────────────────────── v1.4.3 Installed JLLWrappers ─────────────────────────── v1.7.1 Installed Polyester ───────────────────────────── v0.7.18 Installed ConcreteStructs ─────────────────────── v0.2.3 Installed ExproniconLite ──────────────────────── v0.10.14 Installed StaticArrays ────────────────────────── v1.9.15 Installed IteratorInterfaceExtensions ─────────── v1.0.0 Installed NaNMath ─────────────────────────────── v1.1.3 Installed OrderedCollections ──────────────────── v1.8.1 Installed ConstructionBase ────────────────────── v1.6.0 Installed EnzymeCore ──────────────────────────── v0.8.13 Installed TruncatedStacktraces ────────────────── v1.4.0 Installed PrecompileTools ─────────────────────── v1.3.3 Installed EnumX ───────────────────────────────── v1.0.5 Installed PoissonRandom ───────────────────────── v0.4.6 Installed Graphs ──────────────────────────────── v1.13.1 Installed ThreadingUtilities ──────────────────── v0.5.5 Installed JumpProcesses ───────────────────────── v9.19.1 Installed Sundials_jll ────────────────────────── v5.2.3+0 Installed ManualMemory ────────────────────────── v0.1.8 Installed SymbolicIndexingInterface ───────────── v0.3.43 Installed RecursiveArrayTools ─────────────────── v3.37.1 Installed LSODA ───────────────────────────────── v0.7.5 Installed CEnum ───────────────────────────────── v0.5.0 Installed FastClosures ────────────────────────── v0.3.2 Installed LSODA_jll ───────────────────────────── v0.1.2+0 Installed FunctionWrappers ────────────────────── v1.1.3 Installed Reexport ────────────────────────────── v1.2.2 Installed PolyesterWeave ──────────────────────── v0.2.2 Installed ForwardDiff ─────────────────────────── v1.2.0 Installed ArrayInterface ──────────────────────── v7.20.0 Installed Statistics ──────────────────────────── v1.11.1 Installed CommonSubexpressions ────────────────── v0.3.1 Installed Requires ────────────────────────────── v1.3.1 Installed LogExpFunctions ─────────────────────── v0.3.29 Installed MacroTools ──────────────────────────── v0.5.16 Installed FastBroadcast ───────────────────────── v0.3.5 Installed CloseOpenIntervals ──────────────────── v0.1.13 Installed ExprTools ───────────────────────────── v0.1.10 Installed PreallocationTools ──────────────────── v0.4.34 Installed DataStructures ──────────────────────── v0.18.22 Installed CompositionsBase ────────────────────── v0.1.2 Installed Compat ──────────────────────────────── v4.18.0 Installed Static ──────────────────────────────── v1.2.0 Installed OpenSpecFun_jll ─────────────────────── v0.5.6+0 Installed Parameters ──────────────────────────── v0.12.3 Installed InverseFunctions ────────────────────── v0.1.17 Installed SimpleTraits ────────────────────────── v0.9.5 Installed CommonSolve ─────────────────────────── v0.2.4 Installed DocStringExtensions ─────────────────── v0.9.5 Installed UnPack ──────────────────────────────── v1.0.2 Installed CommonWorldInvalidations ────────────── v1.0.0 Installed StaticArrayInterface ────────────────── v1.8.0 Installed DifferentiationInterface ────────────── v0.7.7 Installing 3 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact LSODA 24.9 KiB Installed artifact Sundials 2.1 MiB Updating `~/.julia/environments/v1.12/Project.toml` [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.10 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.17.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.189.1 [459566f4] + DiffEqCallbacks v4.9.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.7 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.13 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [f6369f11] + ForwardDiff v1.2.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.1 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.19.1 [7f56f5a3] + LSODA v0.7.5 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.10 [e409e4f3] + PoissonRandom v0.4.6 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.117.1 [c0aeaf25] + SciMLOperators v1.7.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [7792a7ef] + StrideArraysCore v0.5.8 [c3572dad] + Sundials v4.28.0 [2efcf032] + SymbolicIndexingInterface v0.3.43 [8290d209] + ThreadingUtilities v0.5.5 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [aae0fff6] + LSODA_jll v0.1.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4151.3 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1433.73s ################################################################################ # Testing # Testing PiecewiseDeterministicMarkovProcesses Status `/tmp/jl_k7aPy6/Project.toml` [f6369f11] ForwardDiff v1.2.0 [ccbc3e58] JumpProcesses v9.19.1 [7f56f5a3] LSODA v0.7.5 [1dea7af3] OrdinaryDiffEq v6.102.1 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.10 [d236fae5] PreallocationTools v0.4.34 [731186ca] RecursiveArrayTools v3.37.1 [0bca4576] SciMLBase v2.117.1 [c3572dad] Sundials v4.28.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_k7aPy6/Manifest.toml` [47edcb42] ADTypes v1.17.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 ⌅ [864edb3b] DataStructures v0.18.22 [2b5f629d] DiffEqBase v6.189.1 [459566f4] DiffEqCallbacks v4.9.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.7 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.13 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.28.1 [f6369f11] ForwardDiff v1.2.0 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[14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... 0.113535 seconds (18.21 k allocations: 1011.484 KiB, 99.94% compilation time) Comparison of solvers ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:158 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/qzTLI/src/misc_utils.jl:158 9.638493 seconds (4.19 M allocations: 236.932 MiB, 0.89% gc time, 99.83% compilation time) --> norm difference = 0.00020895427984513049 - solver = cvode 5.969001 seconds (2.00 M allocations: 109.733 MiB, 99.96% compilation time) --> norm difference = 4.562246893158317e-6 - solver = lsoda 3.561490 seconds (2.44 M allocations: 137.096 MiB, 1.74% gc time, 99.85% compilation time: <1% of which was recompilation) --> norm difference = 0.00020895427882905437 - solver = CVODEBDF 3.217704 seconds (1.76 M allocations: 100.632 MiB, 1.80% gc time, 99.82% compilation time: <1% of which was recompilation) --> norm difference = 9.164040960740749e-6 - solver = CVODEAdams 15.281134 seconds (3.35 M allocations: 190.036 MiB, 0.26% gc time, 99.89% compilation time) --> norm difference = 0.00021445406171594072 - solver = RS23 6.464434 seconds (4.50 M allocations: 262.176 MiB, 1.75% gc time, 99.93% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = tsit5 12.214294 seconds (3.54 M allocations: 197.688 MiB, 0.27% gc time, 99.91% compilation time) --> norm difference = 1.5885276383187374e-7 - solver = rodas4P-AutoDiff 11.178984 seconds (3.53 M allocations: 197.253 MiB, 0.79% gc time, 99.88% compilation time) --> norm difference = 3.1827500635017714e-8 - solver = rodas5 8.452674 seconds (5.89 M allocations: 339.627 MiB, 1.27% gc time, 99.94% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = AutoTsit5RS23 0.064611 seconds (16.59 k allocations: 954.703 KiB, 98.10% compilation time) Test Summary: | Pass Total Time Example TCP | 1 1 1m24.5s WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:5. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:74 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:75 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice(ad_alg::Bool, ::Val{0}, ::Val{:forward}) at misc_utils.jl:158 └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/qzTLI/src/misc_utils.jl:158 --> norm difference = 9.985930109479568e-7 - solver = lsoda --> norm difference = 1.2362318864367339e-5 - solver = cvode --> norm difference = 1.2362287630685032e-5 - solver = CVODEBDF --> norm difference = 1.534517703571936e-6 - solver = CVODEAdams --> norm difference = 3.4168918805477233e-9 - solver = tsit5 --> norm difference = 1.6708951999788724e-8 - solver = rodas4P-AutoDiff --> norm difference = 0.0065577534809497795 - solver = rodas5 --> norm difference = 2.2784790345120598e-5 - solver = RS23 --> norm difference = 4.120051351197418e-7 - solver = AutoTsit5-RS23 Test Summary: | Pass Total Time Example explosion of jump times | 1 1 43.6s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:29 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:71. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:33 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:79. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:81. Comparison of solvers - CHV ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:121 --> norm difference = 0.0023436667727310123 - solver = cvode ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 --> norm difference = 0.0021281768231347087 - solver = lsoda --> norm difference = 0.0023436725223291432 - solver = CVODEBDF --> norm difference = 0.002069344401206763 - solver = CVODEAdams --> norm difference = 0.0003403548339520057 - solver = tsit5 --> norm difference = 5.704655495719635e-5 - solver = rodas4P-noAutoDiff --> norm difference = 1.0002506769524189e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.0003403548339520057 - solver = AutoTsit5-RS23 Comparison of solvers - CHV (without saving solution) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 Comparison of solvers - CHV (limited by simulation time) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 0.001862 seconds (4.64 k allocations: 183.875 KiB) 0.001899 seconds (4.54 k allocations: 178.969 KiB) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:516 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:516 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:516 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:516 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:516 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:516 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:516 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:516 Comparison of solvers - rejection ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:176 --> norm difference = 0.001893487349736045 - solver = cvode --> norm difference = 0.001893487349736045 - solver = lsoda --> norm difference = 0.001893487349736045 - solver = CVODEBDF --> norm difference = 0.001893487349736045 - solver = CVODEAdams --> norm difference = 0.001893487349736045 - solver = tsit5 --> norm difference = 0.001893487349736045 - solver = rodas4P-noAutoDiff --> norm difference = 0.001893487349736045 - solver = rodas4P-AutoDiff --> norm difference = 0.001893487349736045 - solver = AutoTsit5-RS23 Alternate between calls CHV - Rej --> norm diff (CHV) = 0.00014644591919932282 --> norm diff (Rej) = 0.001893487349736045 Comparison of solvers, with function Delta ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:212 --> norm difference = 0.005069408256076713 - solver = cvode --> norm difference = 0.0072302110738746705 - solver = lsoda --> norm difference = 0.005070017916750658 - solver = CVODEBDF --> norm difference = 0.010638187483436923 - solver = CVODEAdams --> norm difference = 0.011875623333708063 - solver = tsit5 --> norm difference = 7.266276497830404e-5 - solver = rodas4P-noAutoDiff --> norm difference = 8.647983008813753e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.011875623333708063 - solver = AutoTsit5-RS23 Example with stiff ODE part: Error During Test at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/runtests.jl:19 Got exception outside of a @test LoadError: UndefVarError: `isa_ast_node` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] (::Base.var"#is_simple_atom#is_simply_call##0")(a::Expr) @ Base ./timing.jl:494 [2] is_simply_call(ex::Any) @ Base ./timing.jl:497 [3] _gen_allocation_measurer(ex::Expr, fname::Symbol) @ Base ./timing.jl:506 [4] var"@allocated"(__source__::LineNumberNode, __module__::Module, ex::Any) @ Base ./timing.jl:571 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [6] top-level scope @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/runtests.jl:20 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/runtests.jl:20 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [13] _start() @ Base ./client.jl:554 in expression starting at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:225 in expression starting at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:225 Test Summary: | Pass Error Total Time Example with stiff ODE part | 72 1 73 2m29.0s RNG of the outermost testset: Xoshiro(0x268a52cb631fc304, 0xb560e600f6f0f668, 0xf298bd8b4c9318f6, 0xc41414521710b774, 0x603546c568472736) ERROR: LoadError: Some tests did not pass: 72 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/runtests.jl:19 Testing failed after 309.83s ERROR: LoadError: Package PiecewiseDeterministicMarkovProcesses errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1792.23s: package tests unexpectedly errored