Package evaluation of GraphNeuralNetworks on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T18:26:51.200 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.68s ################################################################################ # Installation # Installing GraphNeuralNetworks... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [cffab07f] + GraphNeuralNetworks v1.0.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [a963bdd2] + AtomsBase v0.5.1 [ab4f0b2a] + BFloat16s v0.5.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [46823bd8] + Chemfiles v0.10.43 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [f151be2c] + EnzymeCore v0.8.13 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [587475ba] + Flux v0.16.5 [f6369f11] + ForwardDiff v1.2.0 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.4.2 [a6a84749] + GNNlib v1.0.1 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [c27321d9] + Glob v1.3.1 [cffab07f] + GraphNeuralNetworks v1.0.0 [86223c79] + Graphs v1.13.1 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [7d512f48] + InternedStrings v0.7.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.38 ⌅ [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [23992714] + MAT v0.10.7 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.12.0 [eb30cadb] + MLDatasets v0.7.18 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.31 [15e1cf62] + NPZ v0.4.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.22 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.10 [4d8831e6] + OpenSSL v1.5.0 [3bd65402] + Optimisers v0.4.6 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.6 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [8162dcfd] + PrettyPrint v0.2.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4db3bf67] + StridedViews v0.4.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.24.0 [a7773ee8] + UnitfulAtomic v1.0.0 [013be700] + UnsafeAtomics v0.3.0 [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [78a364fa] + Chemfiles_jll v0.10.4+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 54.64s ################################################################################ # Testing # Testing GraphNeuralNetworks Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_Vu0Ck5/Project.toml` [cdddcdb0] + ChainRulesTestUtils v1.13.0 [26cc04aa] + FiniteDifferences v0.12.32 ⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6 [f8b46487] + TestItemRunner v1.1.0 Updating `/tmp/jl_Vu0Ck5/Manifest.toml` [cdddcdb0] + ChainRulesTestUtils v1.13.0 [26cc04aa] + FiniteDifferences v0.12.32 ⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6 [708f8203] + Richardson v1.4.2 ⌃ [09ab397b] ↓ StructArrays v0.7.1 ⇒ v0.6.18 [fd094767] + Suppressor v0.2.8 [f8b46487] + TestItemRunner v1.1.0 [1c621080] + TestItems v1.0.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Vu0Ck5/Project.toml` [cdddcdb0] ChainRulesTestUtils v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [587475ba] Flux v0.16.5 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.1 [eb30cadb] MLDatasets v0.7.18 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [e88e6eb3] Zygote v0.7.10 [44cfe95a] Pkg v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Vu0Ck5/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.2 [a963bdd2] AtomsBase v0.5.1 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [cdddcdb0] ChainRulesTestUtils v1.13.0 [46823bd8] Chemfiles v0.10.43 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.13 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.32 [53c48c17] FixedPointNumbers v0.8.5 [587475ba] Flux v0.16.5 [f6369f11] ForwardDiff v1.2.0 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [92fee26a] GZip v0.6.2 [c27321d9] Glob v1.3.1 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.15 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.38 ⌅ [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.12.0 [eb30cadb] MLDatasets v0.7.18 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [872c559c] NNlib v0.9.31 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.22 [6fe1bfb0] OffsetArrays v1.17.0 [0b1bfda6] OneHotArrays v0.2.10 [4d8831e6] OpenSSL v1.5.0 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fbb45041] Pickle v0.3.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [43287f4e] PtrArrays v1.3.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 ⌃ [09ab397b] StructArrays v0.6.18 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.24.0 [a7773ee8] UnitfulAtomic v1.0.0 [013be700] UnsafeAtomics v0.3.0 [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [78a364fa] Chemfiles_jll v0.10.4+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 9111.9 ms ✓ AtomsBase 8147.6 ms ✓ ImageShow 5597.4 ms ✓ Pickle 7677.0 ms ✓ Transducers → TransducersDataFramesExt 6136.6 ms ✓ DataDeps 15690.0 ms ✓ HDF5 6368.0 ms ✓ Chemfiles 7985.6 ms ✓ MAT 32846.8 ms ✓ MLDatasets 9 dependencies successfully precompiled in 104 seconds. 200 already precompiled. layer = "GCNConv" 164.226026 seconds (83.39 M allocations: 4.453 GiB, 1.30% gc time, 99.50% compilation time) 239.404004 seconds (122.40 M allocations: 6.648 GiB, 1.27% gc time, 99.39% compilation time: <1% of which was recompilation) layer = "ResGatedGraphConv" 40.546652 seconds (27.36 M allocations: 3.110 GiB, 8.68% gc time, 83.54% compilation time) 44.005030 seconds (29.72 M allocations: 3.367 GiB, 8.19% gc time, 83.78% compilation time) layer = "GraphConv" 24.364103 seconds (10.00 M allocations: 3.992 GiB, 14.88% gc time, 48.47% compilation time) 28.845231 seconds (12.03 M allocations: 4.509 GiB, 12.76% gc time, 52.99% compilation time) layer = "SAGEConv" 19.270971 seconds (6.51 M allocations: 4.396 GiB, 14.70% gc time, 37.29% compilation time) 22.586076 seconds (7.85 M allocations: 4.927 GiB, 12.71% gc time, 42.05% compilation time) layer = "GATConv" 53.267942 seconds (30.48 M allocations: 2.924 GiB, 5.27% gc time, 90.03% compilation time) 64.610857 seconds (34.91 M allocations: 3.327 GiB, 4.51% gc time, 91.05% compilation time) layer = "GINConv" 24.693420 seconds (10.12 M allocations: 4.248 GiB, 15.66% gc time, 53.00% compilation time) 29.731157 seconds (12.42 M allocations: 4.799 GiB, 16.23% gc time, 54.20% compilation time) layer = "TransformerConv" 55.129074 seconds (34.14 M allocations: 4.231 GiB, 5.89% gc time, 81.06% compilation time) 64.424565 seconds (37.51 M allocations: 4.664 GiB, 6.43% gc time, 81.36% compilation time) Precompiling packages... 21322.2 ms ✓ ChainRulesTestUtils 1 dependency successfully precompiled in 22 seconds. 27 already precompiled. ┌ Warning: inference tests have been disabled └ @ ChainRulesTestUtils ~/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/global_config.jl:13 Unbound or partitioned GlobalRef not allowed in value position Internal error: during type inference of _pullback(Zygote.Context{false}, var"##279".var"#3#4", GraphNeuralNetworks.HeteroGraphConv, Base.Dict{Symbol, Array{Float32, 2}}) Encountered unexpected error in runtime: ErrorException("IR verification failed.\n Code location: /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/layers/heteroconv.jl:19\n Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::Main.var\"##279\".var\"#3#4\", ::GraphNeuralNetworks.HeteroGraphConv, ::Dict{Symbol, Matrix{Float32}})") error at ./error.jl:54 unknown function (ip: 0x7e5114bc3cba) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:125 jfptr_raise_error_56609.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:71 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:429 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1043 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_119949.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_121956.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4502 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1259 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1442 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1451 jfptr_typeinf_ext_toplevel_121923.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3508 _jl_invoke at /source/src/gf.c:3997 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 unknown function (ip: 0x7e5114bc29fd) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 #gradient#1 at /home/pkgeval/.julia/packages/Flux/uRn8o/src/gradient.jl:44 [inlined] gradient at /home/pkgeval/.julia/packages/Flux/uRn8o/src/gradient.jl:31 unknown function (ip: 0x7e5114bc281d) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/layers/heteroconv.jl:19 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 include_string at ./loading.jl:2853 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 #run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7e5126143706) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x7e5126142bce) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/runtests.jl:26 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_81501.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at none:6 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_103313.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e514e246249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [143] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/layers/heteroconv.jl:10 unknown function (ip: 0x7e514e2a9ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:481 jl_compile_method_internal at /source/src/gf.c:3508 _jl_invoke at /source/src/gf.c:3997 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 unknown function (ip: 0x7e5114bc29fd) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f__apply_iterate at /source/src/builtins.c:862 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 #gradient#1 at /home/pkgeval/.julia/packages/Flux/uRn8o/src/gradient.jl:44 [inlined] gradient at /home/pkgeval/.julia/packages/Flux/uRn8o/src/gradient.jl:31 unknown function (ip: 0x7e5114bc281d) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 include_string at ./loading.jl:2853 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] jl_f_invokelatest at /source/src/builtins.c:875 #run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x7e5126143706) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x7e5126142bce) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_81501.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_103313.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e514e246249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 310793909 (Pool: 310791352; Big: 2557); GC: 253 Testing failed after 742.83s ERROR: LoadError: Package GraphNeuralNetworks errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 835.28s: an internal error was encountered