Package evaluation of FormulaCompiler on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T14:14:21.989 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.41s ################################################################################ # Installation # Installing FormulaCompiler... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [72341345] + FormulaCompiler v1.0.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 ⌅ [324d7699] + CategoricalArrays v0.10.8 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.14.0 [72341345] + FormulaCompiler v1.0.0 [f6369f11] + ForwardDiff v1.2.0 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.38.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [5064a6a7] + StandardizedPredictors v1.0.1 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.6 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.38s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 633.92s ################################################################################ # Testing # Testing FormulaCompiler Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_k4fi8G/Project.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [336ed68f] + CSV v0.10.15 [72341345] + FormulaCompiler v1.0.0 ⌅ [f6369f11] ↓ ForwardDiff v1.2.0 ⇒ v0.10.38 ⌅ [ff71e718] ↓ MixedModels v4.38.1 ⇒ v4.36.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_k4fi8G/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [48062228] + FilePathsBase v0.9.24 [72341345] + FormulaCompiler v1.0.0 ⌅ [f6369f11] ↓ ForwardDiff v1.2.0 ⇒ v0.10.38 [682c06a0] + JSON v0.21.4 ⌅ [ff71e718] ↓ MixedModels v4.38.1 ⇒ v4.36.0 [5064a6a7] + StandardizedPredictors v1.0.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [9abbd945] + Profile v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_k4fi8G/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.1 [72341345] FormulaCompiler v1.0.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [38e38edf] GLM v1.9.0 ⌅ [ff71e718] MixedModels v4.36.0 [10745b16] Statistics v1.11.1 [3eaba693] StatsModels v0.7.6 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_k4fi8G/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.0 [aae01518] BandedMatrices v1.9.4 [6e4b80f9] BenchmarkTools v1.6.0 [c3b6d118] BitIntegers v0.3.5 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.0.2 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [72341345] FormulaCompiler v1.0.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.36.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [03a91e81] SplitApplyCombine v1.2.3 [5064a6a7] StandardizedPredictors v1.0.1 [aedffcd0] Static v1.2.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] 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[8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 5981.7 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 9 seconds. 50 already precompiled. Performance Validation: Test Failed at /home/pkgeval/.julia/packages/FormulaCompiler/UGaJS/test/test_overrides.jl:244 Expression: access_time < 0.01 Evaluated: 0.039489181 < 0.01 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/FormulaCompiler/UGaJS/test/test_overrides.jl:244 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] macro expansion @ ~/.julia/packages/FormulaCompiler/UGaJS/test/test_overrides.jl:203 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] top-level scope @ ~/.julia/packages/FormulaCompiler/UGaJS/test/test_overrides.jl:13 Model matrix structure: Intercept: 1.0 cat2[B]: 1.0 cat3[Med]: 0.0 cat3[High]: 0.0 cat4 effects: [0.0, 1.0, 0.0] Interaction terms: [0.0, 0.0] Precompiling packages... 29849.0 ms ✓ CSV 1 dependency successfully precompiled in 30 seconds. 29 already precompiled. Derivative Allocation Checks (BenchmarkTools): Error During Test at /home/pkgeval/.julia/packages/FormulaCompiler/UGaJS/test/test_derivative_allocations.jl:9 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/FormulaCompiler/UGaJS/test/derivative_allocations.csv": Permission denied Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Bool, append::Nothing) @ Base ./iostream.jl:317 [3] open @ ./iostream.jl:296 [inlined] [4] open(fname::String, mode::String; lock::Bool) @ Base ./iostream.jl:380 [5] open(fname::String, mode::String) @ Base ./iostream.jl:379 [6] with(f::CSV.var"#90#91"{Bool, Bool, Tables.Schema{(:path, :min_memory_bytes, :min_time_seconds), Tuple{String, Int64, Float64}}, DataFrames.DataFrameRows{DataFrame}, CSV.Options{UInt8, UInt8, Nothing, Tuple{}, typeof(CSV._identity)}, Vector{UInt8}, Int64, Int64, Tuple{Symbol, Symbol, Symbol}}, io::Any, append::Bool, compress::Bool) @ CSV ~/.julia/packages/CSV/XLcqT/src/write.jl:286 [7] #write#88 @ ~/.julia/packages/CSV/XLcqT/src/write.jl:215 [inlined] [8] write(file::String, itr::DataFrame; append::Bool, compress::Bool, writeheader::Nothing, partition::Bool, kw::@Kwargs{}) @ CSV ~/.julia/packages/CSV/XLcqT/src/write.jl:199 [9] write(file::String, itr::DataFrame) @ CSV ~/.julia/packages/CSV/XLcqT/src/write.jl:162 [10] top-level scope @ ~/.julia/packages/FormulaCompiler/UGaJS/test/test_derivative_allocations.jl:10 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [12] macro expansion @ ~/.julia/packages/FormulaCompiler/UGaJS/test/test_derivative_allocations.jl:109 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [14] top-level scope @ ~/.julia/packages/FormulaCompiler/UGaJS/test/runtests.jl:27 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [16] macro expansion @ ~/.julia/packages/FormulaCompiler/UGaJS/test/runtests.jl:40 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [21] _start() @ Base ./client.jl:554 Test Summary: | Pass Fail Error Total Time FormulaCompiler.jl Tests | 1927 1 1 1929 15m18.6s Position Mapping Tests | 103 103 2m25.6s Zero Allocation Survey | 105 105 7m29.1s Model Correctness Tests | 478 478 33.0s Override System Tests | 1083 1 1084 20.1s OverrideVector Basic Functionality | 1012 1012 0.1s Basic Scenario Creation | 12 12 0.4s Categorical Override Creation | 7 7 0.5s Categorical Scenario Creation | 12 12 4.5s Formula Integration with Overrides | 5 5 4.4s Scenario Grid and Collections | 27 27 3.5s Performance Validation | 2 1 3 6.2s Edge Cases and Error Handling | 6 6 0.6s Check variable differentiation | 6 6 4.0s Categorical Override Tests | 77 77 25.6s Derivative correctness | 35 35 1m11.7s Variance Computation Primitives | 18 18 11.7s Link functions: marginal effects μ | 11 11 0.8s Derivative Allocation Checks (BenchmarkTools) | 11 1 12 1m43.5s RNG of the outermost testset: Xoshiro(0x0349b0ef9ee3d935, 0x972e3d5b6827895d, 0xf25ea93763b8edde, 0x0f4eb2d0a6ae760e, 0xefd49acb58bc5504) ERROR: LoadError: Some tests did not pass: 1927 passed, 1 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/FormulaCompiler/UGaJS/test/runtests.jl:25 Testing failed after 1012.79s ERROR: LoadError: Package FormulaCompiler errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1686.64s: package tests unexpectedly errored