Package evaluation of AnovaMixedModels on Julia 1.12.0-rc2.1 (1fad90817e*) started at 2025-09-11T13:52:26.180 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.82s ################################################################################ # Installation # Installing AnovaMixedModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [6832ca0c] + AnovaMixedModels v0.2.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [946dddda] + AnovaBase v0.8.0 [6832ca0c] + AnovaMixedModels v0.2.4 [4c555306] + ArrayLayouts v1.11.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [1a297f60] + FillArrays v1.14.0 [f6369f11] + ForwardDiff v1.2.0 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.38.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.6 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 295.4s ################################################################################ # Testing # Testing AnovaMixedModels Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_QFACfc/Project.toml` [0a47a8e3] ↑ AnovaGLM v0.2.3 ⇒ v0.2.4 [6832ca0c] + AnovaMixedModels v0.2.4 [336ed68f] ↑ CSV v0.10.11 ⇒ v0.10.15 [324d7699] ↑ CategoricalArrays v0.10.8 ⇒ v1.0.1 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.1 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_QFACfc/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [946dddda] ↑ AnovaBase v0.7.5 ⇒ v0.8.0 [0a47a8e3] ↑ AnovaGLM v0.2.3 ⇒ v0.2.4 [6832ca0c] + AnovaMixedModels v0.2.4 [4c555306] + ArrayLayouts v1.11.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.0 [aae01518] + BandedMatrices v1.9.4 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [336ed68f] ↑ CSV v0.10.11 ⇒ v0.10.15 [49dc2e85] - Calculus v0.5.1 [324d7699] ↑ CategoricalArrays v0.10.8 ⇒ v1.0.1 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] ↑ CodecZlib v0.7.3 ⇒ v0.7.8 [6b39b394] + CodecZstd v0.8.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] ↑ Compat v4.10.1 ⇒ v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [9a962f9c] ↑ DataAPI v1.15.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.1 ⌅ [864edb3b] ↑ DataStructures v0.18.15 ⇒ v0.18.22 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] ↑ Distributions v0.25.104 ⇒ v0.25.120 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [fa6b7ba4] - DualNumbers v0.6.8 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.0.2 [48062228] ↑ FilePathsBase v0.9.21 ⇒ v0.9.24 [1a297f60] ↑ FillArrays v1.9.2 ⇒ v1.14.0 [f6369f11] + ForwardDiff v1.2.0 [34004b35] ↑ HypergeometricFunctions v0.3.23 ⇒ v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] ↑ InlineStrings v1.4.0 ⇒ v1.4.5 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] ↑ LaTeXStrings v1.3.1 ⇒ v1.4.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.26 ⇒ v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0 ⌅ [ff71e718] + MixedModels v4.38.1 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.3 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35 [69de0a69] ↑ Parsers v2.8.0 ⇒ v2.8.3 [aea7be01] ↑ PrecompileTools v1.2.0 ⇒ v1.3.3 [21216c6a] ↑ Preferences v1.4.1 ⇒ v1.5.0 ⌅ [08abe8d2] ↑ PrettyTables v2.3.1 ⇒ v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.9.1 ⇒ v2.11.2 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] ↑ SentinelArrays v1.4.1 ⇒ v1.4.8 [a2af1166] ↑ SortingAlgorithms v1.2.0 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.3.1 ⇒ v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.2.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] ↑ Statistics v1.9.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.2 ⇒ v0.34.6 [4c63d2b9] ↑ StatsFuns v1.3.0 ⇒ v1.5.0 [3eaba693] ↑ StatsModels v0.7.3 ⇒ v0.7.6 [892a3eda] ↑ StringManipulation v0.3.4 ⇒ v0.4.1 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [bd369af6] ↑ Tables v1.11.1 ⇒ v1.12.1 [f269a46b] + TimeZones v1.22.0 [3bb67fe8] ↑ TranscodingStreams v0.10.2 ⇒ v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [c8ffd9c3] - MbedTLS_jll v2.28.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.3 ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.9.2 ⇒ v1.12.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.5+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v7.84.0+0 ⇒ v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] ↑ LibSSH2_jll v1.10.2+0 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2022.10.11 ⇒ v2025.5.20 [4536629a] ↑ OpenBLAS_jll v0.3.21+4 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+0 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] ↑ SuiteSparse_jll v5.10.1+6 ⇒ v7.8.3+2 [83775a58] ↑ Zlib_jll v1.2.13+0 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.8.0+0 ⇒ v5.13.1+1 [8e850ede] ↑ nghttp2_jll v1.48.0+0 ⇒ v1.64.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+0 ⇒ v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_QFACfc/Project.toml` [0a47a8e3] AnovaGLM v0.2.4 [6832ca0c] AnovaMixedModels v0.2.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.1 [a93c6f00] DataFrames v1.7.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_QFACfc/Manifest.toml` [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [946dddda] AnovaBase v0.8.0 [0a47a8e3] AnovaGLM v0.2.4 [6832ca0c] AnovaMixedModels v0.2.4 [4c555306] ArrayLayouts v1.11.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.0 [aae01518] BandedMatrices v1.9.4 [c3b6d118] BitIntegers v0.3.5 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.1 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.0.2 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [f6369f11] ForwardDiff v1.2.0 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.38.1 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [03a91e81] SplitApplyCombine v1.2.3 [aedffcd0] Static v1.2.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.6 [892a3eda] StringManipulation v0.4.1 [354b36f9] StringViews v1.3.5 [856f2bd8] StructTypes v1.11.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.0 [3bb67fe8] TranscodingStreams v0.11.3 [9d95f2ec] TypedTables v1.4.6 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 99277.1 ms ✓ DataFrames 1 dependency successfully precompiled in 101 seconds. 34 already precompiled. Precompiling packages... 2967.7 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 3 seconds. 32 already precompiled. Precompiling packages... 1119.5 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling packages... 6290.8 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 1 dependency successfully precompiled in 6 seconds. 54 already precompiled. Precompiling packages... 6998.0 ms ✓ AnovaGLM 1 dependency successfully precompiled in 9 seconds. 57 already precompiled. Precompiling packages... 5625.9 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 8 seconds. 50 already precompiled. One random effect on intercept: Error During Test at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:51 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Grouping) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::M, !Matched::Vector{U}, !Matched::Vector{T}, ::C) where {U, T, C<:AbstractContrasts, M<:(AbstractMatrix)} @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:31 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:291 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::Grouping, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:34 [2] concrete_term(t::Term, xs::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, contrasts::Grouping) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:214 [3] concrete_term(t::Term, dt::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:186 [4] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}})(t::Term) @ StatsModels ./none:-1 [5] iterate @ ./generator.jl:48 [inlined] [6] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./dict.jl:93 [7] Schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:37 [inlined] [8] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:124 [inlined] [9] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:128 [inlined] [10] schema(t::Term, data::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:34 [11] schema(t::RandomEffectsTerm, data::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:44 [12] schema @ ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:49 [inlined] [13] #schematize##2 @ ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:87 [inlined] [14] (::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}})(acc::StatsModels.Schema, x::FunctionTerm{typeof(|), Vector{AbstractTerm}}) @ Base ./reduce.jl:92 [15] _foldl_impl(op::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}}, init::StatsModels.Schema, itr::Vector{AbstractTerm}) @ Base ./reduce.jl:50 [16] foldl_impl @ ./reduce.jl:40 [inlined] [17] mapfoldl_impl @ ./reduce.jl:36 [inlined] [18] mapfoldl @ ./reduce.jl:167 [inlined] [19] schematize(f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}, Mod::Type) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:84 [20] schematize(f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:65 [21] LinearMixedModel(f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, occas::CategoricalVector{String31, UInt32, String31, CategoricalValue{String31, UInt32}, Union{}}, gpa::Vector{Float64}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, highgpa::Vector{Float64}, admitted::CategoricalVector{Union{Missing, Bool}, UInt32, Bool, CategoricalValue{Bool, UInt32}, Missing}, year::Vector{Int64}, semester::Vector{Int64}, occasion::Vector{Int64}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}, σ::Nothing, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:73 [22] LinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:56 [inlined] [23] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, occas::CategoricalVector{String31, UInt32, String31, CategoricalValue{String31, UInt32}, Union{}}, gpa::Vector{Float64}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, highgpa::Vector{Float64}, admitted::CategoricalVector{Union{Missing, Bool}, UInt32, Bool, CategoricalValue{Bool, UInt32}, Missing}, year::Vector{Int64}, semester::Vector{Int64}, occasion::Vector{Int64}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::@Kwargs{progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:216 [24] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame; kwargs::@Kwargs{wts::Vector{Any}, contrasts::Dict{Symbol, Any}, progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:200 [25] lme(f::FormulaTerm{Term, Tuple{Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame) @ AnovaMixedModels ~/.julia/packages/AnovaMixedModels/1KqfI/src/anova.jl:250 [26] top-level scope @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:50 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [28] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:51 [inlined] [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [30] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:52 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [32] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:52 [inlined] [33] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [34] top-level scope @ none:6 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [37] _start() @ Base ./client.jl:554 Cross random effect on slope and intercept: Error During Test at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:83 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Grouping) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::M, !Matched::Vector{U}, !Matched::Vector{T}, ::C) where {U, T, C<:AbstractContrasts, M<:(AbstractMatrix)} @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:31 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:291 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::Grouping, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:34 [2] concrete_term @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:214 [inlined] [3] concrete_term(t::Term, dt::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:186 [4] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}})(t::Term) @ StatsModels ./none:-1 [5] iterate @ ./generator.jl:48 [inlined] [6] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./dict.jl:93 [7] Schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:37 [inlined] [8] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:124 [inlined] [9] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:128 [inlined] [10] schema(t::Term, data::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:34 [11] schema(t::RandomEffectsTerm, data::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:44 [12] schema @ ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:49 [inlined] [13] #schematize##2 @ ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:87 [inlined] [14] (::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}})(acc::StatsModels.Schema, x::FunctionTerm{typeof(|), Vector{AbstractTerm}}) @ Base ./reduce.jl:92 [15] _foldl_impl(op::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}}, init::StatsModels.Schema, itr::Vector{AbstractTerm}) @ Base ./reduce.jl:50 [16] foldl_impl @ ./reduce.jl:40 [inlined] [17] mapfoldl_impl @ ./reduce.jl:36 [inlined] [18] mapfoldl @ ./reduce.jl:167 [inlined] [19] schematize(f::FormulaTerm{Term, Tuple{Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}, Mod::Type) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:84 [20] schematize(f::FormulaTerm{Term, Tuple{Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{gpa::Vector{Float64}, occasion::Vector{Int64}, student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:65 [21] LinearMixedModel(f::FormulaTerm{Term, Tuple{Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, occas::CategoricalVector{String31, UInt32, String31, CategoricalValue{String31, UInt32}, Union{}}, gpa::Vector{Float64}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, highgpa::Vector{Float64}, admitted::CategoricalVector{Union{Missing, Bool}, UInt32, Bool, CategoricalValue{Bool, UInt32}, Missing}, year::Vector{Int64}, semester::Vector{Int64}, occasion::Vector{Int64}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}, σ::Nothing, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:73 [22] LinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:56 [inlined] [23] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{student::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, occas::CategoricalVector{String31, UInt32, String31, CategoricalValue{String31, UInt32}, Union{}}, gpa::Vector{Float64}, job::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, highgpa::Vector{Float64}, admitted::CategoricalVector{Union{Missing, Bool}, UInt32, Bool, CategoricalValue{Bool, UInt32}, Missing}, year::Vector{Int64}, semester::Vector{Int64}, occasion::Vector{Int64}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::@Kwargs{progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:216 [24] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame; kwargs::@Kwargs{wts::Vector{Any}, contrasts::Dict{Symbol, Any}, progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:200 [25] #lme#27 @ ~/.julia/packages/AnovaMixedModels/1KqfI/src/anova.jl:250 [inlined] [26] top-level scope @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:50 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [28] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:51 [inlined] [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [30] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:84 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [32] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:84 [inlined] [33] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [34] top-level scope @ none:6 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [37] _start() @ Base ./client.jl:554 Nested random effects: Error During Test at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:97 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Grouping) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::M, !Matched::Vector{U}, !Matched::Vector{T}, ::C) where {U, T, C<:AbstractContrasts, M<:(AbstractMatrix)} @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:31 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:291 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::Grouping, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:34 [2] concrete_term(t::Term, xs::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, contrasts::Grouping) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:214 [3] concrete_term(t::Term, dt::@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:186 [4] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}})(t::Term) @ StatsModels ./none:-1 [5] iterate(::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./generator.jl:48 [6] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./dict.jl:93 [7] Schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:37 [inlined] [8] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:124 [inlined] [9] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:128 [inlined] [10] schema(t::Term, data::@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:34 [11] schema(t::RandomEffectsTerm, data::@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:44 [12] schema @ ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:49 [inlined] [13] #schematize##2 @ ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:87 [inlined] [14] (::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}})(acc::StatsModels.Schema, x::FunctionTerm{typeof(|), Vector{AbstractTerm}}) @ Base ./reduce.jl:92 [15] _foldl_impl(op::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}}, init::StatsModels.Schema, itr::Vector{AbstractTerm}) @ Base ./reduce.jl:50 [16] foldl_impl @ ./reduce.jl:40 [inlined] [17] mapfoldl_impl @ ./reduce.jl:36 [inlined] [18] mapfoldl @ ./reduce.jl:167 [inlined] [19] schematize(f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}, Mod::Type) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:84 [20] schematize(f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{stress::Vector{Int64}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:65 [21] LinearMixedModel(f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ward::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, wardid::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, nurse::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, stress::Vector{Int64}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}, σ::Nothing, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:73 [22] LinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:56 [inlined] [23] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{hospital::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ward::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, wardid::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, nurse::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, age::Vector{Int64}, sex::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, experience::Vector{Int64}, stress::Vector{Int64}, wardtype::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, hospsize::CategoricalVector{String7, UInt32, String7, CategoricalValue{String7, UInt32}, Union{}}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::@Kwargs{progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:216 [24] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame; kwargs::@Kwargs{wts::Vector{Any}, contrasts::Dict{Symbol, Any}, progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:200 [25] lme(f::FormulaTerm{Term, Tuple{Term, Term, Term, Term, Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame) @ AnovaMixedModels ~/.julia/packages/AnovaMixedModels/1KqfI/src/anova.jl:250 [26] top-level scope @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:50 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [28] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:51 [inlined] [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [30] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:98 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [32] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:98 [inlined] [33] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [34] top-level scope @ none:6 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [37] _start() @ Base ./client.jl:554 LinearModel and LinearMixedModel: Error During Test at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:143 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Grouping) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::M, !Matched::Vector{U}, !Matched::Vector{T}, ::C) where {U, T, C<:AbstractContrasts, M<:(AbstractMatrix)} @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:31 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:291 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::Grouping, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:34 [2] concrete_term @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:214 [inlined] [3] concrete_term(t::Term, dt::@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:186 [4] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}})(t::Term) @ StatsModels ./none:-1 [5] iterate @ ./generator.jl:48 [inlined] [6] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./dict.jl:93 [7] Schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:37 [inlined] [8] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:124 [inlined] [9] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:128 [inlined] [10] schema(t::Term, data::@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:34 [11] schema(t::RandomEffectsTerm, data::@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:44 [12] schema @ ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:49 [inlined] [13] #schematize##2 @ ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:87 [inlined] [14] (::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}})(acc::StatsModels.Schema, x::FunctionTerm{typeof(|), Vector{AbstractTerm}}) @ Base ./reduce.jl:92 [15] _foldl_impl(op::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}}, init::StatsModels.Schema, itr::Vector{AbstractTerm}) @ Base ./reduce.jl:50 [16] foldl_impl @ ./reduce.jl:40 [inlined] [17] mapfoldl_impl @ ./reduce.jl:36 [inlined] [18] mapfoldl @ ./reduce.jl:167 [inlined] [19] schematize(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}, Mod::Type) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:84 [20] schematize(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{score::Vector{Float64}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, time::Vector{Int64}, id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:65 [21] LinearMixedModel(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, score::Vector{Float64}, time::Vector{Int64}}; contrasts::Dict{Symbol, Any}, wts::Vector{Any}, σ::Nothing, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:73 [22] LinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:56 [inlined] [23] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{id::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, group::PooledArrays.PooledVector{String7, UInt32, Vector{UInt32}}, score::Vector{Float64}, time::Vector{Int64}}; wts::Vector{Any}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::@Kwargs{progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:216 [24] fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame; kwargs::@Kwargs{wts::Vector{Any}, contrasts::Dict{Symbol, Any}, progress::Bool, REML::Bool}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:200 [25] lme(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame) @ AnovaMixedModels ~/.julia/packages/AnovaMixedModels/1KqfI/src/anova.jl:250 [26] top-level scope @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:50 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [28] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:144 [inlined] [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [30] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:145 [inlined] [31] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [32] top-level scope @ none:6 [33] eval(m::Module, e::Any) @ Core ./boot.jl:489 [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [35] _start() @ Base ./client.jl:554 GeneralizedLinearModel and GeneralizedLinearMixedModel: Error During Test at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:156 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Grouping) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::M, !Matched::Vector{U}, !Matched::Vector{T}, ::C) where {U, T, C<:AbstractContrasts, M<:(AbstractMatrix)} @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:31 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/contrasts.jl:291 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::Grouping, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/grouping.jl:34 [2] concrete_term(t::Term, xs::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, contrasts::Grouping) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:214 [3] concrete_term(t::Term, dt::@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ StatsModels ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:186 [4] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}})(t::Term) @ StatsModels ./none:-1 [5] iterate @ ./generator.jl:48 [inlined] [6] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Grouping}}}) @ Base ./dict.jl:93 [7] Schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:37 [inlined] [8] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:124 [inlined] [9] schema @ ~/.julia/packages/StatsModels/YNwJ1/src/schema.jl:128 [inlined] [10] schema(t::Term, data::@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Grouping}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:34 [11] schema(t::RandomEffectsTerm, data::@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:44 [12] schema @ ~/.julia/packages/MixedModels/ZnFbm/src/randomeffectsterm.jl:49 [inlined] [13] #schematize##2 @ ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:87 [inlined] [14] (::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}})(acc::StatsModels.Schema, x::FunctionTerm{typeof(|), Vector{AbstractTerm}}) @ Base ./reduce.jl:92 [15] _foldl_impl(op::Base.MappingRF{MixedModels.var"#schematize##2#schematize##3"{@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}, Base.BottomRF{typeof(merge)}}, init::StatsModels.Schema, itr::Vector{AbstractTerm}) @ Base ./reduce.jl:50 [16] foldl_impl @ ./reduce.jl:40 [inlined] [17] mapfoldl_impl @ ./reduce.jl:36 [inlined] [18] mapfoldl @ ./reduce.jl:167 [inlined] [19] schematize(f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}, Mod::Type) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:84 [20] schematize(f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, visit::Vector{Int64}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, contrasts::Dict{Symbol, Any}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/schema.jl:65 [21] LinearMixedModel(f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, time::Vector{Float64}, visit::Vector{Int64}}; contrasts::Dict{Symbol, Any}, wts::Vector{Float64}, σ::Nothing, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:73 [22] LinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/linearmixedmodel.jl:56 [inlined] [23] GeneralizedLinearMixedModel(f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, time::Vector{Float64}, visit::Vector{Int64}}, d::Binomial{Float64}, l::LogitLink; wts::Vector{Float64}, offset::Vector{Any}, contrasts::Dict{Symbol, Any}, amalgamate::Bool) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/generalizedlinearmixedmodel.jl:392 [24] GeneralizedLinearMixedModel @ ~/.julia/packages/MixedModels/ZnFbm/src/generalizedlinearmixedmodel.jl:369 [inlined] [25] fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{patientID::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, outcome::PooledArrays.PooledVector{Bool, UInt32, Vector{UInt32}}, treatment::CategoricalVector{String15, UInt32, String15, CategoricalValue{String15, UInt32}, Union{}}, time::Vector{Float64}, visit::Vector{Int64}}, d::Binomial{Float64}, l::LogitLink; wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::@Kwargs{nAGQ::Int64}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/generalizedlinearmixedmodel.jl:187 [26] fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{Term, Tuple{Term, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame, d::Binomial{Float64}, l::LogitLink; kwargs::@Kwargs{nAGQ::Int64, wts::Vector{Float64}}) @ MixedModels ~/.julia/packages/MixedModels/ZnFbm/src/generalizedlinearmixedmodel.jl:172 [27] #glme#28 @ ~/.julia/packages/AnovaMixedModels/1KqfI/src/anova.jl:263 [inlined] [28] top-level scope @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:50 [29] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [30] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:157 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [32] macro expansion @ ~/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:159 [inlined] [33] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:306 [34] top-level scope @ none:6 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:287 [37] _start() @ Base ./client.jl:554 Test Summary: | Error Total Time AnovaMixedModels.jl | 5 5 1m42.1s LinearMixedModel | 3 3 58.9s One random effect on intercept | 1 1 40.6s Cross random effect on slope and intercept | 1 1 8.2s Nested random effects | 1 1 10.1s LinearModel and LinearMixedModel | 1 1 24.7s GeneralizedLinearModel and GeneralizedLinearMixedModel | 1 1 18.5s RNG of the outermost testset: Random.Xoshiro(0x434787f1304297ea, 0x649f383461616fcd, 0xfab78dbfc10c52b1, 0xb654bd0a8faafea3, 0x530c209707517b3b) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AnovaMixedModels/1KqfI/test/runtests.jl:49 Testing failed after 387.37s ERROR: LoadError: Package AnovaMixedModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 717.88s: package tests unexpectedly errored