Package evaluation of NeutralLandscapes on Julia 1.12.0-beta4.15 (235a7dedc7*) started at 2025-06-09T11:09:56.417


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.33s


################################################################################
# Installation
#

Installing NeutralLandscapes...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [71847384] + NeutralLandscapes v0.1.5
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.13.0
  [13907d55] + HaltonSequences v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [18e54dd8] + IntegerMathUtils v0.1.2
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.21
  [71847384] + NeutralLandscapes v0.1.5
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [27ebfcd6] + Primes v0.5.7
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.8.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0

Installation completed after 2.93s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   3057.5 ms  ✓ TestEnv
  1 dependency successfully precompiled in 3 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 87.62s


################################################################################
# Testing
#

     Testing NeutralLandscapes
      Status `/tmp/jl_t3yx5J/Project.toml`
  [71847384] NeutralLandscapes v0.1.5
  [1bc83da4] SafeTestsets v0.1.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_t3yx5J/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [34da2185] Compat v4.16.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.13.0
  [13907d55] HaltonSequences v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [18e54dd8] IntegerMathUtils v0.1.2
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.21
  [71847384] NeutralLandscapes v0.1.5
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [27ebfcd6] Primes v0.5.7
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.8.0
  [1bc83da4] SafeTestsets v0.1.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
     Testing Running tests...
┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead
│   caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30
└ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30
┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead
│   caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32
└ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32
┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead
│   caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30
└ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30
┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead
│   caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32
└ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32
Test Summary: | Pass  Total   Time
updaters      |  123    123  32.0s
 32.217386 seconds (14.96 M allocations: 798.184 MiB, 2.19% gc time, 65.63% compilation time: 5% of which was recompilation)
Test Summary:   | Pass  Total  Time
planar gradient |    3      3  3.0s
  3.051136 seconds (4.23 M allocations: 230.618 MiB, 1.37% gc time, 99.51% compilation time)
┌ Warning: `find_root` is deprecated, use `find_root!` instead.
│   caller = label(mat::Matrix{Float64}, neighborhood::Symbol) at classify.jl:139
└ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/classify.jl:139

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 205 running 1 of 2

signal (10): User defined signal 1
unknown function (ip: 0x702333009f14) at /lib/x86_64-linux-gnu/libc.so.6
pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822
ijl_task_get_next at /source/src/scheduler.c:523
wait at ./task.jl:1216
wait_forever at ./task.jl:1150
jfptr_wait_forever_83920.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3614 [inlined]
ijl_apply_generic at /source/src/gf.c:3814
jl_apply at /source/src/julia.h:2374 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)
_ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE8sectionsEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line)
unknown function (ip: 0x7ffc773e358f) at (unknown file)
unknown function (ip: 0x26) at (unknown file)
unknown function (ip: 0x7022f72f61ef) at (unknown file)
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 2

signal (10): User defined signal 1
unknown function (ip: 0x72b374ff5f14) at /lib/x86_64-linux-gnu/libc.so.6
pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822
ijl_task_get_next at /source/src/scheduler.c:523
wait at ./task.jl:1216
wait_forever at ./task.jl:1150
jfptr_wait_forever_83920.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3614 [inlined]
ijl_apply_generic at /source/src/gf.c:3814
jl_apply at /source/src/julia.h:2374 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1216
wait_forever at ./task.jl:1150
jfptr_wait_forever_83920.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3614 [inlined]
ijl_apply_generic at /source/src/gf.c:3814
jl_apply at /source/src/julia.h:2374 [inlined]
start_task at /source/src/task.c:1249
unknown function (ip: (nil)) at (unknown file)

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (interactive) Task 0x000072b35bba71c0 Total snapshots: 524. Utilization: 0%
   ╎524 @Base/task.jl:1150  wait_forever()
523╎ 524 @Base/task.jl:1216  wait()

Thread 2 (default) Task 0x000072b35e3fc100 Total snapshots: 524. Utilization: 0%
   ╎524 @Base/task.jl:1150  wait_forever()
523╎ 524 @Base/task.jl:1216  wait()


[205] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/test/rand.jl:47
unknown function (ip: 0x702333009f14) at /lib/x86_64-linux-gnu/libc.so.6
pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822
ijl_task_get_next at /source/src/scheduler.c:523
wait at ./task.jl:1216
wait_forever at ./task.jl:1150

PkgEval terminated after 3874.06s: test duration exceeded the time limit