Package evaluation to test VectorizedKmers on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-03T14:00:46.086 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.52s ################################################################################ # Installation # Installing VectorizedKmers... Resolving package versions... Installed StaticArraysCore ─ v1.4.4 Installed VectorizedKmers ── v0.9.2 Updating `~/.julia/environments/v1.14/Project.toml` [2ef45bd6] + VectorizedKmers v0.9.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [1e83bf80] + StaticArraysCore v1.4.4 [2ef45bd6] + VectorizedKmers v0.9.2 Installation completed after 4.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 8.8 s ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 1.3 s ✓ StaticArraysCore 0.8 s ✓ Twiddle 31.7 s ✓ Preferences 0.9 s ✓ VectorizedKmers 31.8 s ✓ PrecompileTools 121.6 s ✓ BioSymbols ERROR: LoadError: Creating a new global in closed module `Base` (`##->###0`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] eval_closure_type(mod::Module, closure_type_name::Symbol, field_names::Core.SimpleVector, field_is_box::Core.SimpleVector)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:96  [2] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/counting.jl:129  [3] eval(m::Module, e::Any)  @ Core boot.jl:522  [4] _eval(mod::Module, iter::Base.JuliaLowering.LoweringIterator{Dict{Symbol, Dict{Int64, Any}}}; soft_scope::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:745  [5] eval(mod::Module, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}; macro_world::UInt64, soft_scope::Nothing, opts::@Kwargs{expr_compat_mode::Bool})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:718 [inlined]  [6] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/counting.jl:129  [7] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [8] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/BioSequences.jl:225  [9] include(mod::Module, _path::String)  @ Base Base.jl:325  [10] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [11] top-level scope  @ stdin:5  [12] eval(m::Module, e::Any)  @ Core boot.jl:522  [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [14] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [15] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [16] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/31amM/src/counting.jl:129 in expression starting at /home/pkgeval/.julia/packages/BioSequences/31amM/src/BioSequences.jl:8 in expression starting at stdin:5 ✗ BioSequences ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130  [12] top-level scope  @ ~/.julia/packages/VectorizedKmers/ReHLs/ext/BioSequencesExt.jl:3  [13] include(mod::Module, _path::String)  @ Base Base.jl:325  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core boot.jl:522  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [18] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [20] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/VectorizedKmers/ReHLs/ext/BioSequencesExt.jl:1 in expression starting at stdin:5 ✗ VectorizedKmers → BioSequencesExt 6 dependencies successfully precompiled in 253 seconds. 12 already precompiled. Precompilation completed after 302.97s ################################################################################ # Testing # Testing VectorizedKmers Status `/tmp/jl_FumvGe/Project.toml` [7e6ae17a] BioSequences v3.5.1 [1e83bf80] StaticArraysCore v1.4.4 [2ef45bd6] VectorizedKmers v0.9.2 [8dfed614] Test v1.11.0 Status `/tmp/jl_FumvGe/Manifest.toml` [7e6ae17a] BioSequences v3.5.1 [3c28c6f8] BioSymbols v5.2.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [1e83bf80] StaticArraysCore v1.4.4 [7200193e] Twiddle v1.1.2 [2ef45bd6] VectorizedKmers v0.9.2 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 Testing Running tests... ERROR: LoadError: Creating a new global in closed module `Base` (`##->###0`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] eval_closure_type(mod::Module, closure_type_name::Symbol, field_names::Core.SimpleVector, field_is_box::Core.SimpleVector)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:96  [2] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/counting.jl:129  [3] eval(m::Module, e::Any)  @ Core boot.jl:522  [4] _eval(mod::Module, iter::Base.JuliaLowering.LoweringIterator{Dict{Symbol, Dict{Int64, Any}}}; soft_scope::Nothing)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:745  [5] eval(mod::Module, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}; macro_world::UInt64, soft_scope::Nothing, opts::@Kwargs{expr_compat_mode::Bool})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:718 [inlined]  [6] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/counting.jl:129  [7] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [8] top-level scope  @ ~/.julia/packages/BioSequences/31amM/src/BioSequences.jl:225  [9] include(mod::Module, _path::String)  @ Base Base.jl:325  [10] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [11] top-level scope  @ stdin:5  [12] eval(m::Module, e::Any)  @ Core boot.jl:522  [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [14] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [15] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [16] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/BioSequences/31amM/src/counting.jl:129 in expression starting at /home/pkgeval/.julia/packages/BioSequences/31amM/src/BioSequences.jl:8 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ BioSequences │ [Output was shown above] └ extensions: Error During Test at /home/pkgeval/.julia/packages/VectorizedKmers/ReHLs/test/runtests.jl:9 Got exception outside of a @test LoadError: The following 1 package failed to precompile: BioSequences Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to "/home/pkgeval/.julia/compiled/v1.14/BioSequences/jl_3DEfQL" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/VectorizedKmers/ReHLs/test/ext/BioSequencesExt.jl:1 Test Summary: | Pass Error Total Time VectorizedKmers.jl | 18 1 19 1m12.3s KmerArray.jl | 14 14 2.1s count.jl | 4 4 0.2s extensions | 1 1 1m08.6s RNG of the outermost testset: Random.Xoshiro(0x2b3d9c4631a16f9e, 0x16b9801b7b520bbd, 0xc7e80357112dea55, 0x863dcb0ed1d9bc32, 0x02a2bab3b6714bdc) ERROR: LoadError: Some tests did not pass: 18 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/VectorizedKmers/ReHLs/test/runtests.jl:4 Testing failed after 194.07s ERROR: LoadError: Package VectorizedKmers errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 542.26s: package fails to precompile