Package evaluation to test Radiomics on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-04T02:24:28.815


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.97s


################################################################################
# Installation
#

Installing Radiomics...
   Resolving package versions...
   Installed OrderedCollections ── v1.8.2
   Installed StatsBase ─────────── v0.34.12
   Installed DataStructures ────── v0.19.5
   Installed CodecZlib ─────────── v0.7.8
   Installed DataAPI ───────────── v1.16.0
   Installed AliasTables ───────── v1.1.3
   Installed Statistics ────────── v1.11.1
   Installed TranscodingStreams ── v0.11.3
   Installed LogExpFunctions ───── v1.0.1
   Installed Parsers ───────────── v2.8.6
   Installed PrecompileTools ───── v1.3.4
   Installed Radiomics ─────────── v1.3.3
   Installed StatsAPI ──────────── v1.8.0
   Installed IrrationalConstants ─ v0.2.6
   Installed JSON3 ─────────────── v1.14.3
   Installed SortingAlgorithms ─── v1.2.3
   Installed NIfTI ─────────────── v0.6.2
   Installed PtrArrays ─────────── v1.4.0
   Installed Missings ──────────── v1.2.0
   Installed Preferences ───────── v1.5.2
   Installed MappedArrays ──────── v0.4.3
   Installed StructTypes ───────── v1.11.0
   Installed DocStringExtensions ─ v0.9.5
    Updating `~/.julia/environments/v1.14/Project.toml`
  [a80a7044] + Radiomics v1.3.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [944b1d66] + CodecZlib v0.7.8
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.5
  [ffbed154] + DocStringExtensions v0.9.5
  [92d709cd] + IrrationalConstants v0.2.6
  [0f8b85d8] + JSON3 v1.14.3
  [2ab3a3ac] + LogExpFunctions v1.0.1
  [dbb5928d] + MappedArrays v0.4.3
  [e1d29d7a] + Missings v1.2.0
  [a3a9e032] + NIfTI v0.6.2
⌅ [bac558e1] + OrderedCollections v1.8.2
  [69de0a69] + Parsers v2.8.6
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [43287f4e] + PtrArrays v1.4.0
  [a80a7044] + Radiomics v1.3.3
  [a2af1166] + SortingAlgorithms v1.2.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.12
  [856f2bd8] + StructTypes v1.11.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [0dad84c5] + ArgTools v1.2.0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [b27032c2] + LibCURL v1.0.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.14.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2
  [deac9b47] + LibCURL_jll v8.21.0+0
  [29816b5a] + LibSSH2_jll v1.11.101+0
  [14a3606d] + MozillaCACerts_jll v2026.5.14
  [4536629a] + OpenBLAS_jll v0.3.33+0
  [458c3c95] + OpenSSL_jll v3.5.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.69.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.08s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling project...
   9.0 s  ✓ TestEnv
  1 dependency successfully precompiled in 9 seconds. 27 already precompiled.

Precompiling package dependencies...
Precompiling project...
   1.3 s  ✓ MappedArrays
   1.4 s  ✓ Statistics
   1.1 s  ✓ DataAPI
   2.7 s  ✓ IrrationalConstants
   0.8 s  ✓ StatsAPI
 149.6 s  ✓ OrderedCollections
   1.4 s  ✓ DocStringExtensions
  37.1 s  ✓ PtrArrays
  56.2 s  ✓ TranscodingStreams
  32.0 s  ✓ StructTypes
  31.1 s  ✓ Preferences
  41.4 s  ✓ Statistics → SparseArraysExt
  55.8 s  ✓ Missings
 171.9 s  ✓ DataStructures
   1.8 s  ✓ LogExpFunctions
  37.7 s  ✓ AliasTables
  20.0 s  ✓ CodecZlib
  31.5 s  ✓ PrecompileTools
  40.7 s  ✓ SortingAlgorithms
  51.8 s  ✓ NIfTI
  69.3 s  ✓ Parsers
ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`#kw_body#_#48`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [3] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:251
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:1
in expression starting at stdin:5
              ✗ StatsBase
  45.9 s  ✓ JSON3
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/Radiomics/0V8uQ/src/first_order_features.jl:1
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
 [14] top-level scope
    @ ~/.julia/packages/Radiomics/0V8uQ/src/Radiomics.jl:10
 [15] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [20] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [22] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Radiomics/0V8uQ/src/first_order_features.jl:1
in expression starting at /home/pkgeval/.julia/packages/Radiomics/0V8uQ/src/Radiomics.jl:1
in expression starting at stdin:5
              ✗ Radiomics
  22 dependencies successfully precompiled in 1077 seconds. 27 already precompiled.

Precompilation completed after 1125.02s


################################################################################
# Testing
#

     Testing Radiomics
      Status `/tmp/jl_Bv5sU7/Project.toml`
  [0f8b85d8] JSON3 v1.14.3
  [a3a9e032] NIfTI v0.6.2
  [aea7be01] PrecompileTools v1.3.4
  [a80a7044] Radiomics v1.3.3
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.12
  [f43a241f] Downloads v1.7.0
  [37e2e46d] LinearAlgebra v1.14.0
  [9a3f8284] Random v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Bv5sU7/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [944b1d66] CodecZlib v0.7.8
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.5
  [ffbed154] DocStringExtensions v0.9.5
  [92d709cd] IrrationalConstants v0.2.6
  [0f8b85d8] JSON3 v1.14.3
  [2ab3a3ac] LogExpFunctions v1.0.1
  [dbb5928d] MappedArrays v0.4.3
  [e1d29d7a] Missings v1.2.0
  [a3a9e032] NIfTI v0.6.2
⌅ [bac558e1] OrderedCollections v1.8.2
  [69de0a69] Parsers v2.8.6
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [43287f4e] PtrArrays v1.4.0
  [a80a7044] Radiomics v1.3.3
  [a2af1166] SortingAlgorithms v1.2.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.12
  [856f2bd8] StructTypes v1.11.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [0dad84c5] ArgTools v1.2.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.5+2
  [deac9b47] LibCURL_jll v8.21.0+0
  [29816b5a] LibSSH2_jll v1.11.101+0
  [14a3606d] MozillaCACerts_jll v2026.5.14
  [4536629a] OpenBLAS_jll v0.3.33+0
  [458c3c95] OpenSSL_jll v3.5.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.69.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`#kw_body#_#48`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [3] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:251
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/Radiomics/0V8uQ/src/first_order_features.jl:1
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
 [14] top-level scope
    @ ~/.julia/packages/Radiomics/0V8uQ/src/Radiomics.jl:10
 [15] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [20] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [22] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Radiomics/0V8uQ/src/first_order_features.jl:1
in expression starting at /home/pkgeval/.julia/packages/Radiomics/0V8uQ/src/Radiomics.jl:1
in expression starting at stdin:5
  2 dependencies had output during precompilation:
┌ StatsBase
│  ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`#kw_body#_#48`) breaks incremental compilation because the side effects will not be permanent.
│  Stacktrace:
│    [1] top-level scope
│      @ ~/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
│    [2] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base Base.jl:326
│    [3] top-level scope
│      @ ~/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:251
│    [4] include(mod::Module, _path::String)
│      @ Base Base.jl:325
│    [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base loading.jl:3303
│    [6] top-level scope
│      @ stdin:5
│    [7] eval(m::Module, e::Any)
│      @ Core boot.jl:522
│    [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base loading.jl:3132
│    [9] include_string(m::Module, txt::String, fname::String)
│      @ Base loading.jl:3142 [inlined]
│   [10] exec_options(opts::Base.JLOptions)
│      @ Base client.jl:353
│   [11] _start()
│      @ Base client.jl:596
│  in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
│  in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:1
│  in expression starting at stdin:5
└  
┌ Radiomics
│  [Output was shown above]
└  
ERROR: LoadError: The following 2 packages failed to precompile:

StatsBase 
Failed to precompile StatsBase [2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91] to "/home/pkgeval/.julia/compiled/v1.14/StatsBase/jl_gvdWb5" (ProcessExited(1)).

Radiomics 
Failed to precompile Radiomics [a80a7044-09a6-4a0a-a486-eb806178b9ba] to "/home/pkgeval/.julia/compiled/v1.14/Radiomics/jl_UejlO7" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/Radiomics/0V8uQ/test/runtests.jl:3

Testing failed after 410.31s

ERROR: LoadError: Package Radiomics errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247
  [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
  [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [7] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
  [8] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [9] exec_options(opts::Base.JLOptions)
    @ Base client.jl:355
 [10] _start()
    @ Base client.jl:596
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 1583.64s: package fails to precompile