Package evaluation to load PlanktonIndividuals on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-04T00:10:33.140 ################################################################################ # Set-up # Set-up completed after 0.15s ################################################################################ # Installation # Installing PlanktonIndividuals... Resolving package versions... Installed OrderedCollections ────────── v1.8.2 Installed Adapt ─────────────────────── v4.7.0 Installed MacroTools ────────────────── v0.5.16 Installed ConstructionBase ──────────── v1.6.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed JLD2 ──────────────────────── v0.5.15 Installed DataAPI ───────────────────── v1.16.0 Installed TranscodingStreams ────────── v0.11.3 Installed Statistics ────────────────── v1.11.1 Installed DataValueInterfaces ───────── v1.0.0 Installed StructArrays ──────────────── v0.7.3 Installed Atomix ────────────────────── v1.1.3 Installed StaticArraysCore ──────────── v1.4.4 Installed Requires ──────────────────── v1.3.1 Installed PrecompileTools ───────────── v1.3.4 Installed StaticArrays ──────────────── v1.9.18 Installed FileIO ────────────────────── v1.19.0 Installed KernelAbstractions ────────── v0.9.42 Installed Tables ────────────────────── v1.13.0 Installed ScopedValues ──────────────── v1.6.2 Installed UnsafeAtomics ─────────────── v0.3.1 Installed Preferences ───────────────── v1.5.2 Installed TableTraits ───────────────── v1.0.1 Installed PlanktonIndividuals ───────── v0.7.5 Installing 2 artifacts Installed artifact OCCA_FlowFields 543.5 KiB Installed artifact surface_mixing_vels 21.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [dfeb4ede] + PlanktonIndividuals v0.7.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.7.0 [a9b6321e] + Atomix v1.1.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [5789e2e9] + FileIO v1.19.0 [076d061b] + HashArrayMappedTries v0.2.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [63c18a36] + KernelAbstractions v0.9.42 [1914dd2f] + MacroTools v0.5.16 ⌅ [bac558e1] + OrderedCollections v1.8.2 [dfeb4ede] + PlanktonIndividuals v0.7.5 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.6.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [09ab397b] + StructArrays v0.7.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.1 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [4536629a] + OpenBLAS_jll v0.3.33+0 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 12.77s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling project... 4.1 s ✓ MacroTools 1.6 s ✓ Adapt 1.4 s ✓ Statistics 1.1 s ✓ DataAPI 1.7 s ✓ ConstructionBase 0.7 s ✓ DataValueInterfaces 1.3 s ✓ StaticArraysCore 70.0 s ✓ UnsafeAtomics 152.8 s ✓ OrderedCollections 1.1 s ✓ HashArrayMappedTries 56.9 s ✓ TranscodingStreams 0.5 s ✓ IteratorInterfaceExtensions 1.7 s ✓ Requires 31.5 s ✓ Preferences 0.6 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 37.4 s ✓ Atomix 1.3 s ✓ ScopedValues 0.7 s ✓ TableTraits 13.9 s ✓ FileIO 32.0 s ✓ PrecompileTools 152.0 s ✓ Tables 363.3 s ✓ StaticArrays ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 ERROR: LoadError: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:231  [2] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined]  [3] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined]  [4] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1  [5] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [6] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [7] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [8] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [10] IncludeInto  @ ./Base.jl:327 [inlined]  [11] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/JLD2.jl:1 in expression starting at stdin:5  caused by: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jlread(io::IOStream, ::Type{JLD2.HeaderMessage})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/types.jl:44  [2] read_header_message(f::JLD2.JLDFile{IOStream}, io::IOStream, header_version::UInt8, chunk_start::Int64, groupflags::UInt8)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:122  [3] iterate(itr::JLD2.HeaderMessageIterator{IOStream}, state::Nothing)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:217  [4] iterate(itr::JLD2.HeaderMessageIterator{IOStream})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:191 [inlined]  [5] load_group(f::JLD2.JLDFile{IOStream}, offset::JLD2.RelOffset)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/groups.jl:196  [6] initialize_fileobject!(f::JLD2.JLDFile{IOStream})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:253  [7] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:228  [8] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined]  [9] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined]  [10] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1  [11] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [12] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [13] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [14] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [15] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [16] IncludeInto  @ ./Base.jl:327 [inlined]  [17] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501  [18] include(mod::Module, _path::String)  @ Base Base.jl:325  [19] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core boot.jl:522  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [23] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [25] _start()  @ Base client.jl:596 ✗ JLD2 118.2 s ✓ StructArrays 36.0 s ✓ StaticArrays → StaticArraysStatisticsExt 35.6 s ✓ Adapt → AdaptStaticArraysExt 35.9 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 40.1 s ✓ StructArrays → StructArraysLinearAlgebraExt 39.6 s ✓ StructArrays → StructArraysAdaptExt 79.1 s ✓ StructArrays → StructArraysStaticArraysExt 103.2 s ✓ KernelAbstractions 39.6 s ✓ KernelAbstractions → LinearAlgebraExt ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("033835bb-8acc-5ee8-8aae-3f567f8a3819"), "JLD2") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130  [12] top-level scope  @ ~/.julia/packages/PlanktonIndividuals/tRgat/src/Output/Output.jl:8  [13] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [14] top-level scope  @ ~/.julia/packages/PlanktonIndividuals/tRgat/src/PlanktonIndividuals.jl:93  [15] include(mod::Module, _path::String)  @ Base Base.jl:325  [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [17] top-level scope  @ stdin:5  [18] eval(m::Module, e::Any)  @ Core boot.jl:522  [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [20] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [21] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [22] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/src/Output/Output.jl:1 in expression starting at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/src/PlanktonIndividuals.jl:1 in expression starting at stdin:5 ✗ PlanktonIndividuals 31 dependencies successfully precompiled in 1724 seconds. 30 already precompiled. Precompilation completed after 1751.24s ################################################################################ # Loading # Loading PlanktonIndividuals... ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 ERROR: LoadError: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:231  [2] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined]  [3] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined]  [4] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1  [5] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [6] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [7] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [8] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [10] IncludeInto  @ ./Base.jl:327 [inlined]  [11] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/JLD2.jl:1 in expression starting at stdin:5  caused by: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jlread(io::IOStream, ::Type{JLD2.HeaderMessage})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/types.jl:44  [2] read_header_message(f::JLD2.JLDFile{IOStream}, io::IOStream, header_version::UInt8, chunk_start::Int64, groupflags::UInt8)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:122  [3] iterate(itr::JLD2.HeaderMessageIterator{IOStream}, state::Nothing)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:217  [4] iterate(itr::JLD2.HeaderMessageIterator{IOStream})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:191 [inlined]  [5] load_group(f::JLD2.JLDFile{IOStream}, offset::JLD2.RelOffset)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/groups.jl:196  [6] initialize_fileobject!(f::JLD2.JLDFile{IOStream})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:253  [7] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:228  [8] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined]  [9] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined]  [10] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1  [11] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [12] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [13] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [14] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3  [15] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [16] IncludeInto  @ ./Base.jl:327 [inlined]  [17] top-level scope  @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501  [18] include(mod::Module, _path::String)  @ Base Base.jl:325  [19] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core boot.jl:522  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [23] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [25] _start()  @ Base client.jl:596 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("033835bb-8acc-5ee8-8aae-3f567f8a3819"), "JLD2") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_using(to::Module, path::Expr, flags::UInt8)  @ Base module.jl:137 [inlined]  [11] eval_using(to::Module, path::Expr)  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130  [12] top-level scope  @ ~/.julia/packages/PlanktonIndividuals/tRgat/src/Output/Output.jl:8  [13] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [14] top-level scope  @ ~/.julia/packages/PlanktonIndividuals/tRgat/src/PlanktonIndividuals.jl:93  [15] include(mod::Module, _path::String)  @ Base Base.jl:325  [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [17] top-level scope  @ stdin:5  [18] eval(m::Module, e::Any)  @ Core boot.jl:522  [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [20] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [21] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [22] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/src/Output/Output.jl:1 in expression starting at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/src/PlanktonIndividuals.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ JLD2 │ ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream │ └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 │ ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream │ └ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:154 │ ERROR: LoadError: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} │ Stacktrace: │ [1] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:231 │ [2] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined] │ [3] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined] │ [4] jldopen(f::Function, args::String; kws::@Kwargs{}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1 │ [5] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 │ [6] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String) │ @ Base.Filesystem file.jl:920 │ [7] mktemp(fn::Function) │ @ Base.Filesystem file.jl:918 │ [8] top-level scope │ @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 │ [9] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:326 │ [10] IncludeInto │ @ ./Base.jl:327 [inlined] │ [11] top-level scope │ @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501 │ [12] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3303 │ [14] top-level scope │ @ stdin:5 │ [15] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [17] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [18] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [19] _start() │ @ Base client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 │ in expression starting at /home/pkgeval/.julia/packages/JLD2/SgtOb/src/JLD2.jl:1 │ in expression starting at stdin:5 │ │ caused by: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} │ Stacktrace: │ [1] jlread(io::IOStream, ::Type{JLD2.HeaderMessage}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/types.jl:44 │ [2] read_header_message(f::JLD2.JLDFile{IOStream}, io::IOStream, header_version::UInt8, chunk_start::Int64, groupflags::UInt8) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:122 │ [3] iterate(itr::JLD2.HeaderMessageIterator{IOStream}, state::Nothing) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:217 │ [4] iterate(itr::JLD2.HeaderMessageIterator{IOStream}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/object_headers.jl:191 [inlined] │ [5] load_group(f::JLD2.JLDFile{IOStream}, offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/groups.jl:196 │ [6] initialize_fileobject!(f::JLD2.JLDFile{IOStream}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:253 │ [7] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:228 │ [8] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:165 [inlined] │ [9] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:267 [inlined] │ [10] jldopen(f::Function, args::String; kws::@Kwargs{}) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/loadsave.jl:1 │ [11] (::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream) │ @ JLD2 ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 │ [12] mktemp(fn::JLD2.var"##->###7"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String) │ @ Base.Filesystem file.jl:920 │ [13] mktemp(fn::Function) │ @ Base.Filesystem file.jl:918 │ [14] top-level scope │ @ ~/.julia/packages/JLD2/SgtOb/src/precompile.jl:3 │ [15] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:326 │ [16] IncludeInto │ @ ./Base.jl:327 [inlined] │ [17] top-level scope │ @ ~/.julia/packages/JLD2/SgtOb/src/JLD2.jl:501 │ [18] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [19] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3303 │ [20] top-level scope │ @ stdin:5 │ [21] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [23] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [24] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [25] _start() │ @ Base client.jl:596 └ ┌ PlanktonIndividuals │ [Output was shown above] └ ERROR: The following 2 packages failed to precompile: JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.14/JLD2/jl_RuJaBE" (ProcessExited(1)). PlanktonIndividuals Failed to precompile PlanktonIndividuals [dfeb4ede-c75e-11e9-050d-41ab7a730e9e] to "/home/pkgeval/.julia/compiled/v1.14/PlanktonIndividuals/jl_KJfcBs" (ProcessExited(1)). Loading failed after 276.68s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --check-bounds=yes --pkgimages=existing -e 'using PlanktonIndividuals'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error(proc::Base.Process) @ Base process.jl:612 [inlined] [2] run(::Cmd; wait::Bool) @ Base process.jl:525 [3] run(::Cmd) @ Base process.jl:522 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:197 [5] include(mod::Module, _path::String) @ Base Base.jl:325 [6] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [7] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:188 PkgEval failed after 2072.68s: package fails to precompile