Package evaluation to test PEtabSelect on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-03T22:09:23.305 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.53s ################################################################################ # Installation # Installing PEtabSelect... Resolving package versions... Installed OrderedCollections ────────── v2.0.1 Installed micromamba_jll ────────────── v2.3.1+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed MacroTools ────────────────── v0.5.16 Installed DataAPI ───────────────────── v1.16.0 Installed UnsafePointers ────────────── v1.0.0 Installed CondaPkg ──────────────────── v0.2.36 Installed PrecompileTools ───────────── v1.3.4 Installed StructUtils ───────────────── v2.8.2 Installed Parsers ───────────────────── v2.8.6 Installed Tables ────────────────────── v1.13.0 Installed JSON ──────────────────────── v1.6.1 Installed DataValueInterfaces ───────── v1.0.0 Installed pixi_jll ──────────────────── v0.63.2+0 Installed Pidfile ───────────────────── v1.3.0 Installed MicroMamba ────────────────── v0.1.15 Installed Scratch ───────────────────── v1.3.0 Installed JLLWrappers ───────────────── v1.8.0 Installed TableTraits ───────────────── v1.0.1 Installed PEtabSelect ───────────────── v0.1.0 Installed Preferences ───────────────── v1.5.2 Installed PythonCall ────────────────── v0.9.35 Updating `~/.julia/environments/v1.14/Project.toml` [6de2f99a] + PEtabSelect v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [992eb4ea] + CondaPkg v0.2.36 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.15 [bac558e1] + OrderedCollections v2.0.1 [6de2f99a] + PEtabSelect v0.1.0 [69de0a69] + Parsers v2.8.6 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [6099a3de] + PythonCall v0.9.35 [6c6a2e73] + Scratch v1.3.0 [ec057cc2] + StructUtils v2.8.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v2.3.1+0 [4d7b5844] + pixi_jll v0.63.2+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.4+0 [29816b5a] + LibSSH2_jll v1.11.101+0 [14a3606d] + MozillaCACerts_jll v2026.5.14 [458c3c95] + OpenSSL_jll v3.5.7+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.69.0+0 [3f19e933] + p7zip_jll v17.8.0+0 Installation completed after 5.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 9.3 s ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.1 s ✓ MacroTools 1.1 s ✓ DataAPI 60.1 s ✓ UnsafePointers 0.7 s ✓ DataValueInterfaces 116.2 s ✓ OrderedCollections 0.6 s ✓ SafeTestsets 0.6 s ✓ IteratorInterfaceExtensions 30.4 s ✓ Scratch 28.3 s ✓ StructUtils 2.3 s ✓ Compat 31.5 s ✓ Preferences 1.4 s ✓ Pidfile 0.7 s ✓ TableTraits 1.0 s ✓ Compat → CompatLinearAlgebraExt 32.5 s ✓ JLLWrappers 31.9 s ✓ PrecompileTools 152.4 s ✓ Tables 48.3 s ✓ Aqua 9.8 s ✓ micromamba_jll 9.9 s ✓ pixi_jll 31.8 s ✓ Libiconv_jll 69.2 s ✓ Parsers 41.2 s ✓ StructUtils → StructUtilsTablesExt  Downloading artifact: micromamba 37.4 s ✓ MicroMamba 76.7 s ✓ StringEncodings 133.8 s ✓ JSON 97.0 s ✓ YAML  Downloading artifact: pixi 84.9 s ✓ CondaPkg 645.3 s ✓ PythonCall  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PEtabSelect/hK2Tm/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml  CondaPkg Resolving changes  + openssl  + petab-select (pip)  + python  + uv  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_qCS4kB/.CondaPkg ✔ Created /tmp/jl_qCS4kB/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_qCS4kB/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=3, <3.6"  │ uv = ">=0.4"  │  │ [dependencies.python]  │ version = ">=3.10,!=3.14.0,!=3.14.1,<4"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [pypi-dependencies]  │ petab-select = "*"  │  │ [workspace]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi  │ install  └ --manifest-path /tmp/jl_qCS4kB/.CondaPkg/pixi.toml ✔ The default environment has been installed. 134.8 s ✓ PEtabSelect 30 dependencies successfully precompiled in 1916 seconds. 31 already precompiled. 3 dependencies had output during precompilation: ┌ CondaPkg │ Downloading artifact: pixi └ ┌ MicroMamba │ Downloading artifact: micromamba └ ┌ PEtabSelect │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PEtabSelect/hK2Tm/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/lKlVY/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/5WGSP/CondaPkg.toml │ CondaPkg Resolving changes │ + openssl │ + petab-select (pip) │ + python │ + uv │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_qCS4kB/.CondaPkg │ ✔ Created /tmp/jl_qCS4kB/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_qCS4kB/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ uv = ">=0.4" │ │ │ │ [dependencies.python] │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [pypi-dependencies] │ │ petab-select = "*" │ │ │ │ [workspace] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/4ae17cee0bd922f66b2c72bf2f01c22481a5ec19/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_qCS4kB/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 1960.57s ################################################################################ # Testing # Testing PEtabSelect Status `/tmp/jl_qYOkaS/Project.toml` [4c88cf16] Aqua v0.8.16 [992eb4ea] CondaPkg v0.2.36 [6de2f99a] PEtabSelect v0.1.0 [6099a3de] PythonCall v0.9.35 [1bc83da4] SafeTestsets v0.1.0 [ddb6d928] YAML v0.4.16 [8dfed614] Test v1.11.0 Status `/tmp/jl_qYOkaS/Manifest.toml` [4c88cf16] Aqua v0.8.16 [34da2185] Compat v4.18.1 [992eb4ea] CondaPkg v0.2.36 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.15 [bac558e1] OrderedCollections v2.0.1 [6de2f99a] PEtabSelect v0.1.0 [69de0a69] Parsers v2.8.6 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [6099a3de] PythonCall v0.9.35 [1bc83da4] SafeTestsets v0.1.0 [6c6a2e73] Scratch v1.3.0 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.8.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [e17b2a0c] UnsafePointers v1.0.0 [ddb6d928] YAML v0.4.16 [94ce4f54] Libiconv_jll v1.18.0+0 [f8abcde7] micromamba_jll v2.3.1+0 [4d7b5844] pixi_jll v0.63.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.4+0 [29816b5a] LibSSH2_jll v1.11.101+0 [14a3606d] MozillaCACerts_jll v2026.5.14 [458c3c95] OpenSSL_jll v3.5.7+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.69.0+0 [3f19e933] p7zip_jll v17.8.0+0 Testing Running tests... ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module Test into module SafeTestsets.var"##Aqua Quality Check#1048" in package SafeTestsets because package SafeTestsets does not have Test in its dependencies: - Note that the following manifests in the load path were resolved with a potentially different DEV version of the current version, which may be the cause of the error. Try to re-resolve them in the current version, or consider deleting them if that fails: /tmp/jl_qYOkaS/Manifest.toml - You may have a partially installed environment. Try `Pkg.instantiate()` to ensure all packages in the environment are installed. - Or, if you have SafeTestsets checked out for development and have added Test as a dependency but haven't updated your primary environment's manifest file, try `Pkg.resolve()`. - Otherwise you may need to report an issue with SafeTestsets Stacktrace: [1] macro expansion @ loading.jl:2583 [inlined] [2] macro expansion @ lock.jl:376 [inlined] [3] __require(into::Module, mod::Symbol) @ Base loading.jl:2563 [4] require(into::Module, mod::Symbol) @ Base loading.jl:2539 [inlined] [5] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String) @ Base module.jl:36 [inlined] [6] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base module.jl:60 [7] _eval_using(to::Module, path::Expr, flags::UInt8) @ Base module.jl:137 [inlined] [8] eval_using(to::Module, path::Expr) @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130 [9] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:29 [10] eval(m::Module, e::Any) @ Core boot.jl:522 [11] _eval(mod::Module, iter::Base.JuliaLowering.LoweringIterator{Dict{Symbol, Dict{Int64, Any}}}; soft_scope::Nothing) @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:745 [12] eval(mod::Module, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}; macro_world::UInt64, soft_scope::Nothing, opts::@Kwargs{expr_compat_mode::Bool}) @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:718 [inlined] [13] top-level scope @ ~/.julia/packages/PEtabSelect/hK2Tm/test/runtests.jl:3 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:326 [15] top-level scope @ none:6 [16] eval(m::Module, e::Any) @ Core boot.jl:522 [17] exec_options(opts::Base.JLOptions) @ Base client.jl:321 [18] _start() @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/PEtabSelect/hK2Tm/test/runtests.jl:3 Testing failed after 17.52s ERROR: LoadError: Package PEtabSelect errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2047.68s: package tests unexpectedly errored