Package evaluation to test PDBTools on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-04T02:16:15.049


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 14.81s


################################################################################
# Installation
#

Installing PDBTools...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [e29189f1] + PDBTools v3.33.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [69e1c6dd] + CellListMap v0.10.3
  [ae650224] + ChunkSplitters v3.2.0
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [ffbed154] + DocStringExtensions v0.9.5
  [1fa38f19] + Format v1.3.7
  [842dd82b] + InlineStrings v1.4.5
  [692b3bcd] + JLLWrappers v1.8.0
  [682c06a0] + JSON v1.6.1
  [1914dd2f] + MacroTools v0.5.16
  [aea21201] + MolSimToolkitShared v1.6.0
  [bac558e1] + OrderedCollections v2.0.1
  [e29189f1] + PDBTools v3.33.2
  [69de0a69] + Parsers v2.8.6
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [92933f4c] + ProgressMeter v1.11.0
  [c298f58b] + ProteinSecondaryStructures v2.0.3
  [fdea26ae] + SIMD v3.7.2
  [efcf1570] + Setfield v1.1.2
  [90137ffa] + StaticArrays v1.9.18
  [1e83bf80] + StaticArraysCore v1.4.4
  [ec057cc2] + StructUtils v2.8.2
  [1c621080] + TestItems v1.0.0
  [74334e00] + DSSP_jll v4.4.0+1
  [850473c1] + STRIDE_jll v1.0.0+0
  [0dad84c5] + ArgTools v1.2.0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.14.0
  [56ddb016] + Logging v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [fa267f1f] + TOML v1.0.3
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2
  [deac9b47] + LibCURL_jll v8.21.0+0
  [29816b5a] + LibSSH2_jll v1.11.101+0
  [14a3606d] + MozillaCACerts_jll v2026.5.14
  [4536629a] + OpenBLAS_jll v0.3.33+0
  [458c3c95] + OpenSSL_jll v3.5.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.69.0+0

Installation completed after 5.72s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unitful/sxiHA/src/logarithm.jl:127:5

Base. *(::MixedUnits, ::MixedUnits) =
#   └───────────────────────────────┘ ── extra tokens after end of expression
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Unitful/sxiHA/src/logarithm.jl:127
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [3] top-level scope
    @ ~/.julia/packages/Unitful/sxiHA/src/Unitful.jl:67
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Unitful/sxiHA/src/logarithm.jl:127
in expression starting at /home/pkgeval/.julia/packages/Unitful/sxiHA/src/Unitful.jl:1
in expression starting at stdin:5
              ✗ Unitful
ERROR: LoadError: Creating a new global in closed module `IrrationalConstants` (`#kw_body#_#48`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [3] top-level scope
    @ ~/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:251
  [4] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
  [6] top-level scope
    @ stdin:5
  [7] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
  [9] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [10] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [11] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/scalarstats.jl:527
in expression starting at /home/pkgeval/.julia/packages/StatsBase/2Znv8/src/StatsBase.jl:1
in expression starting at stdin:5
              ✗ StatsBase
  74.7 s  ✓ MolSimToolkitShared
  31.7 s  ✓ ProteinSecondaryStructures
ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
  [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
  [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
  [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
  [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
  [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
  [7] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [9] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
 [10] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [15] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [17] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
in expression starting at stdin:5
              ✗ CellListMap
 245.6 s  ✓ Documenter
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("1986cc42-f94f-5a68-af5c-568840ba703d"), "Unitful") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/Unitful/sxiHA/ext/ConstructionBaseUnitfulExt.jl:2
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Unitful/sxiHA/ext/ConstructionBaseUnitfulExt.jl:1
in expression starting at stdin:5
              ✗ Unitful → ConstructionBaseUnitfulExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("1986cc42-f94f-5a68-af5c-568840ba703d"), "Unitful") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/Unitful/sxiHA/ext/PrintfExt.jl:4
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Unitful/sxiHA/ext/PrintfExt.jl:1
in expression starting at stdin:5
              ✗ Unitful → PrintfExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("69e1c6dd-3888-40e6-b3c8-31ac5f578864"), "CellListMap") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base module.jl:111
 [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [11] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
 [12] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
 [13] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:119
 [14] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [16] top-level scope
    @ stdin:5
 [17] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [19] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [20] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [21] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:1
in expression starting at stdin:5
              ✗ PDBTools
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("1986cc42-f94f-5a68-af5c-568840ba703d"), "Unitful") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/UnitfulLatexify/RZL4m/src/UnitfulLatexify.jl:3
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/UnitfulLatexify/RZL4m/src/UnitfulLatexify.jl:1
in expression starting at stdin:5
              ✗ UnitfulLatexify
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base module.jl:111
 [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [11] top-level scope
    @ ~/.julia/packages/Plots/rlpAr/src/Plots.jl:40
 [12] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [14] top-level scope
    @ stdin:5
 [15] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [17] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [18] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [19] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Plots/rlpAr/src/Plots.jl:1
in expression starting at stdin:5
              ✗ Plots
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("91a5bcdd-55d7-5caf-9e0b-520d859cae80"), "Plots") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/Plots/rlpAr/ext/UnitfulExt.jl:6
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Plots/rlpAr/ext/UnitfulExt.jl:4
in expression starting at stdin:5
              ✗ Plots → UnitfulExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("e29189f1-7114-4dbd-93d0-c5673a921a58"), "PDBTools") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/ext/Plotting.jl:3
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/ext/Plotting.jl:1
in expression starting at stdin:5
              ✗ PDBTools → Plotting
  3 dependencies successfully precompiled in 1349 seconds. 211 already precompiled.

Precompilation completed after 1390.86s


################################################################################
# Testing
#

     Testing PDBTools
    Updating git-repo `https://github.com/lmiq/Documenter.jl`
      Status `/tmp/jl_LOxTOu/Project.toml`
  [4c88cf16] Aqua v0.8.16
  [69e1c6dd] CellListMap v0.10.3
  [0ca39b1e] Chairmarks v1.3.1
  [ae650224] ChunkSplitters v3.2.0
  [34da2185] Compat v4.18.1
  [8bb1440f] DelimitedFiles v1.9.1
  [e30172f5] Documenter v1.17.0 `https://github.com/lmiq/Documenter.jl#top_menu_from_pages`
  [1fa38f19] Format v1.3.7
  [842dd82b] InlineStrings v1.4.5
  [682c06a0] JSON v1.6.1
  [aea21201] MolSimToolkitShared v1.6.0
  [bac558e1] OrderedCollections v2.0.1
  [e29189f1] PDBTools v3.33.2
⌃ [91a5bcdd] Plots v1.41.0
  [aea7be01] PrecompileTools v1.3.4
  [c298f58b] ProteinSecondaryStructures v2.0.3
  [fdea26ae] SIMD v3.7.2
  [aed2ae9c] ShowMethodTesting v1.3.0
  [90137ffa] StaticArrays v1.9.18
  [f8b46487] TestItemRunner v1.1.5
  [1c621080] TestItems v1.0.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [de0858da] Printf v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_LOxTOu/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [1520ce14] AbstractTrees v0.4.5
  [66dad0bd] AliasTables v1.1.3
  [4c88cf16] Aqua v0.8.16
  [d1d4a3ce] BitFlags v0.1.10
  [69e1c6dd] CellListMap v0.10.3
  [0ca39b1e] Chairmarks v1.3.1
  [ae650224] ChunkSplitters v3.2.0
  [944b1d66] CodecZlib v0.7.8
  [35d6a980] ColorSchemes v3.31.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [34da2185] Compat v4.18.1
  [f0e56b4a] ConcurrentUtilities v2.5.1
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [9a962f9c] DataAPI v1.16.0
⌃ [864edb3b] DataStructures v0.12.0
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.5
  [e30172f5] Documenter v1.17.0 `https://github.com/lmiq/Documenter.jl#top_menu_from_pages`
  [460bff9d] ExceptionUnwrapping v0.1.11
  [c87230d0] FFMPEG v0.4.5
⌅ [53c48c17] FixedPointNumbers v0.8.6
  [1fa38f19] Format v1.3.7
  [59287772] Formatting v0.4.3
  [28b8d3ca] GR v0.73.26
  [d7ba0133] Git v1.5.0
  [42e2da0e] Grisu v1.0.2
⌅ [cd3eb016] HTTP v1.11.0
  [b5f81e59] IOCapture v1.0.0
  [842dd82b] InlineStrings v1.4.5
  [92d709cd] IrrationalConstants v0.2.6
  [1019f520] JLFzf v0.1.11
  [692b3bcd] JLLWrappers v1.8.0
  [682c06a0] JSON v1.6.1
  [b964fa9f] LaTeXStrings v1.4.0
⌃ [23fbe1c1] Latexify v0.15.16
  [0e77f7df] LazilyInitializedFields v1.3.0
  [2ab3a3ac] LogExpFunctions v1.0.1
  [e6f89c97] LoggingExtras v1.2.0
  [1914dd2f] MacroTools v0.5.16
  [d0879d2d] MarkdownAST v0.1.3
  [739be429] MbedTLS v1.1.10
  [442fdcdd] Measures v0.3.3
  [e1d29d7a] Missings v1.2.0
  [aea21201] MolSimToolkitShared v1.6.0
  [77ba4419] NaNMath v1.1.4
  [4d8831e6] OpenSSL v1.6.1
  [bac558e1] OrderedCollections v2.0.1
  [e29189f1] PDBTools v3.33.2
  [69de0a69] Parsers v2.8.6
  [ccf2f8ad] PlotThemes v3.3.0
  [995b91a9] PlotUtils v1.4.4
⌃ [91a5bcdd] Plots v1.41.0
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [92933f4c] ProgressMeter v1.11.0
  [c298f58b] ProteinSecondaryStructures v2.0.3
  [43287f4e] PtrArrays v1.4.0
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [189a3867] Reexport v1.2.2
  [2792f1a3] RegistryInstances v0.1.0
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [fdea26ae] SIMD v3.7.2
  [6c6a2e73] Scratch v1.3.0
  [efcf1570] Setfield v1.1.2
  [aed2ae9c] ShowMethodTesting v1.3.0
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.2.0
  [a2af1166] SortingAlgorithms v1.2.3
  [860ef19b] StableRNGs v1.0.4
  [90137ffa] StaticArrays v1.9.18
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.12
  [ec057cc2] StructUtils v2.8.2
  [62fd8b95] TensorCore v0.1.1
  [f8b46487] TestItemRunner v1.1.5
  [1c621080] TestItems v1.0.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.6.1
  [1cfade01] UnicodeFun v0.4.1
⌅ [1986cc42] Unitful v1.24.0
⌃ [45397f5d] UnitfulLatexify v1.6.4
  [41fe7b60] Unzip v0.2.0
  [6e34b625] Bzip2_jll v1.0.9+0
  [83423d85] Cairo_jll v1.18.7+0
  [74334e00] DSSP_jll v4.4.0+1
  [ee1fde0b] Dbus_jll v1.16.2+0
  [2702e6a9] EpollShim_jll v0.0.20230411+1
  [2e619515] Expat_jll v2.8.1+0
  [b22a6f82] FFMPEG_jll v8.1.2+0
  [a3f928ae] Fontconfig_jll v2.17.1+0
  [d7e528f0] FreeType2_jll v2.14.3+1
  [559328eb] FriBidi_jll v1.0.17+0
  [0656b61e] GLFW_jll v3.4.1+1
  [d2c73de3] GR_jll v0.73.26+0
⌅ [b0724c58] GettextRuntime_jll v0.22.4+0
  [020c3dae] Git_LFS_jll v3.7.1+0
  [f8c6e375] Git_jll v2.54.0+0
  [7746bdde] Glib_jll v2.86.3+0
  [3b182d85] Graphite2_jll v1.3.16+0
⌅ [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [aacddb02] JpegTurbo_jll v3.1.5+0
  [c1c5ebd0] LAME_jll v3.100.3+0
  [88015f11] LERC_jll v4.1.0+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
⌅ [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.42.0+0
  [89763e89] Libtiff_jll v4.7.2+0
  [38a345b3] Libuuid_jll v2.42.0+0
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [e7412a2a] Ogg_jll v1.3.6+0
  [9bd350c2] OpenSSH_jll v10.3.1+0
  [91d4177d] Opus_jll v1.6.1+0
  [36c8627f] Pango_jll v1.57.1+0
  [30392449] Pixman_jll v0.46.4+0
  [c0090381] Qt6Base_jll v6.10.2+2
  [629bc702] Qt6Declarative_jll v6.10.2+2
  [ce943373] Qt6ShaderTools_jll v6.10.2+1
  [6de9746b] Qt6Svg_jll v6.10.2+0
  [e99dba38] Qt6Wayland_jll v6.10.2+1
  [850473c1] STRIDE_jll v1.0.0+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.24.0+0
  [ffd25f8a] XZ_jll v5.8.3+0
  [f67eecfb] Xorg_libICE_jll v1.1.2+0
  [c834827a] Xorg_libSM_jll v1.2.6+0
  [4f6342f7] Xorg_libX11_jll v1.8.13+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [935fb764] Xorg_libXcursor_jll v1.2.4+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.8+0
  [d091e8ba] Xorg_libXfixes_jll v6.0.2+0
  [a51aa0fd] Xorg_libXi_jll v1.8.3+0
  [d1454406] Xorg_libXinerama_jll v1.1.7+0
  [ec84b674] Xorg_libXrandr_jll v1.5.6+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [cc61e674] Xorg_libxkbfile_jll v1.2.0+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0
  [12413925] Xorg_xcb_util_image_jll v0.4.1+0
  [2def613f] Xorg_xcb_util_jll v0.4.1+0
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0
  [35661453] Xorg_xkbcomp_jll v1.4.7+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.47.0+1
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [35ca27e7] eudev_jll v3.2.14+0
  [214eeab7] fzf_jll v0.61.1+0
  [a4ae2306] libaom_jll v3.13.3+0
  [0ac62f75] libass_jll v0.17.4+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [8e53e030] libdrm_jll v2.4.125+1
  [2db6ffa8] libevdev_jll v1.13.4+0
  [f638f0a6] libfdk_aac_jll v2.0.4+0
  [36db933b] libinput_jll v1.28.1+0
  [b53b4c65] libpng_jll v1.6.58+0
  [9a156e7d] libva_jll v2.23.0+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [009596ad] mtdev_jll v1.1.7+0
⌅ [1270edf5] x264_jll v10164.0.1+0
  [dfaa095f] x265_jll v4.1.0+0
  [d8fb68d0] xkbcommon_jll v1.13.0+0
  [0dad84c5] ArgTools v1.2.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.5+2
  [deac9b47] LibCURL_jll v8.21.0+0
  [e37daf67] LibGit2_jll v1.9.4+0
  [29816b5a] LibSSH2_jll v1.11.101+0
  [14a3606d] MozillaCACerts_jll v2026.5.14
  [4536629a] OpenBLAS_jll v0.3.33+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.7+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.69.0+0
  [3f19e933] p7zip_jll v17.8.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
  [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
  [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
  [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
  [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
  [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
  [7] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [9] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
 [10] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [15] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [17] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("69e1c6dd-3888-40e6-b3c8-31ac5f578864"), "CellListMap") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base module.jl:111
 [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [11] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
 [12] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
 [13] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:119
 [14] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [16] top-level scope
    @ stdin:5
 [17] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [19] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [20] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [21] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:1
in expression starting at stdin:5
  2 dependencies had output during precompilation:
┌ PDBTools
│  [Output was shown above]
└  
┌ CellListMap
│  ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
│  Suggestion: check for spelling errors or missing imports.
│  Stacktrace:
│    [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
│    [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
│    [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
│    [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
│    [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
│    [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
│    [7] top-level scope
│      @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
│    [8] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base Base.jl:326
│    [9] top-level scope
│      @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
│   [10] include(mod::Module, _path::String)
│      @ Base Base.jl:325
│   [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base loading.jl:3303
│   [12] top-level scope
│      @ stdin:5
│   [13] eval(m::Module, e::Any)
│      @ Core boot.jl:522
│   [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base loading.jl:3132
│   [15] include_string(m::Module, txt::String, fname::String)
│      @ Base loading.jl:3142 [inlined]
│   [16] exec_options(opts::Base.JLOptions)
│      @ Base client.jl:353
│   [17] _start()
│      @ Base client.jl:596
│  in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
│  in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
│  in expression starting at stdin:5
└  

ramachandran plots: Error During Test at /home/pkgeval/.julia/packages/PDBTools/Sfvly/ext/plot_ramachandran.jl:60
  Got exception outside of a @test
  The following 2 packages failed to precompile:
  PDBTools 
  Failed to precompile PDBTools [e29189f1-7114-4dbd-93d0-c5673a921a58] to "/home/pkgeval/.julia/compiled/v1.14/PDBTools/jl_z4Qyhl" (ProcessExited(1)).
  CellListMap 
  Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.14/CellListMap/jl_e1ILUP" (ProcessExited(1)).
ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
  [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
  [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
  [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
  [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
  [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
  [7] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [9] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
 [10] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [15] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [17] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("69e1c6dd-3888-40e6-b3c8-31ac5f578864"), "CellListMap") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base module.jl:111
 [10] eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [11] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
 [12] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
 [13] top-level scope
    @ ~/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:119
 [14] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [15] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [16] top-level scope
    @ stdin:5
 [17] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [18] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [19] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [20] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [21] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:1
in expression starting at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/PDBTools.jl:1
in expression starting at stdin:5
  2 dependencies had output during precompilation:
┌ PDBTools
│  [Output was shown above]
└  
┌ CellListMap
│  ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
│  Suggestion: check for spelling errors or missing imports.
│  Stacktrace:
│    [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
│    [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
│    [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
│    [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
│    [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
│    [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
│      @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
│    [7] top-level scope
│      @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
│    [8] include(mapexpr::Function, mod::Module, _path::String)
│      @ Base Base.jl:326
│    [9] top-level scope
│      @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
│   [10] include(mod::Module, _path::String)
│      @ Base Base.jl:325
│   [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base loading.jl:3303
│   [12] top-level scope
│      @ stdin:5
│   [13] eval(m::Module, e::Any)
│      @ Core boot.jl:522
│   [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base loading.jl:3132
│   [15] include_string(m::Module, txt::String, fname::String)
│      @ Base loading.jl:3142 [inlined]
│   [16] exec_options(opts::Base.JLOptions)
│      @ Base client.jl:353
│   [17] _start()
│      @ Base client.jl:596
│  in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
│  in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
│  in expression starting at stdin:5
└  

contact_map: Error During Test at /home/pkgeval/.julia/packages/PDBTools/Sfvly/src/coordinates/contacts.jl:478
  Got exception outside of a @test
  The following 2 packages failed to precompile:
  PDBTools 
  Failed to precompile PDBTools [e29189f1-7114-4dbd-93d0-c5673a921a58] to "/home/pkgeval/.julia/compiled/v1.14/PDBTools/jl_tReVau" (ProcessExited(1)).
  CellListMap 
  Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.14/CellListMap/jl_dNcSaB" (ProcessExited(1)).
ERROR: LoadError: UndefVarError: `number_of_cells` not defined in `CellListMap`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:518 [inlined]
  [2] CellListMap.CellList(x::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, y::CellListMap.ParticleSystemPositions{3, Float64, Vector{StaticArraysCore.SVector{3, Float64}}}, box::CellListMap.Box{CellListMap.TriclinicCell, 3, Float64, Float64, 9, Float64}; parallel::Bool, nbatches::Tuple{Int64, Int64}, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/internals/CellLists.jl:600
  [3] ParticleSystem(xpositions::Vector{StaticArraysCore.SVector{3, Float64}}; ypositions::Vector{StaticArraysCore.SVector{3, Float64}}, unitcell::StaticArraysCore.SMatrix{3, 3, Float64, 9}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:15
  [4] ParticleSystem(; positions::Nothing, xpositions::Matrix{Float64}, ypositions::Matrix{Float64}, unitcell::Matrix{Float64}, cutoff::Float64, output::CellListMap.NeighborList{Float64}, output_name::Symbol, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates))
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/ParticleSystem.jl:200
  [5] CellListMap.InPlaceNeighborList(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:21
  [6] neighborlist(; xpositions::Matrix{Float64}, positions::Nothing, ypositions::Matrix{Float64}, cutoff::Float64, unitcell::Matrix{Float64}, parallel::Bool, nbatches::Tuple{Int64, Int64}, lcell::Int64, validate_coordinates::typeof(CellListMap._validate_coordinates), show_progress::Bool)
    @ CellListMap ~/.julia/packages/CellListMap/YISDG/src/API/neighborlist.jl:233
  [7] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [9] top-level scope
    @ ~/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:58
 [10] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [11] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [12] top-level scope
    @ stdin:5
 [13] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [14] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [15] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [16] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [17] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/internals/precompile.jl:2
in expression starting at /home/pkgeval/.julia/packages/CellListMap/YISDG/src/CellListMap.jl:1
in expression starting at stdin:5

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 71 running 1 of 1

signal (10): User defined signal 1
_ZNK4llvm13AttributeList16getMemoryEffectsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZNK4llvm8CallBase16getMemoryEffectsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZNK4llvm8CallBase15onlyReadsMemoryEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZNK4llvm11Instruction16mayWriteToMemoryEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm22SelectionDAGISelLegacy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
operator() at /source/src/jitlayers.cpp:1388:23
compileModule at /source/src/jitlayers.cpp:2368:79
materialize at /source/src/jitlayers.cpp:877:36
_ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
dispatch at /source/src/julia-task-dispatcher.h:361:11
_ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line)
publishCIs at /source/src/jitlayers.cpp:2059:14
jl_compile_codeinst_impl at /source/src/jitlayers.cpp:511:39
jl_compile_method_very_internal at /source/src/gf.c:3927:27
_jl_invoke at /source/src/gf.c:4337:16 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
core_lowering_hook at /source/usr/share/julia/JuliaLowering/src/hooks.jl:30:0 (pc: 111)
unknown function (ip: 0x7c6abdb01ae5) at (unknown file)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
ijl_lower at /source/src/ast.c:1271:26
jl_eval_toplevel_stmts at /source/src/toplevel.c:594:31
jl_eval_module_expr at /source/src/toplevel.c:262:5 [inlined]
jl_toplevel_eval_flex at /source/src/toplevel.c:661:27
jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15
jl_toplevel_eval_flex at /source/src/toplevel.c:680:27
ijl_toplevel_eval at /source/src/toplevel.c:778:12
ijl_toplevel_eval_in at /source/src/toplevel.c:823:13
eval at ./boot.jl:522:0 (pc: 1)
include_string at ./loading.jl:3132:0 (pc: 208)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
_include at ./loading.jl:3192:0 (pc: 122)
include at ./Base.jl:325:0 (pc: 1)
include_package_for_output at ./loading.jl:3303:0 (pc: 848)
jfptr_include_package_for_output_1.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
do_call at /source/src/interpreter.c:123:26
eval_value at /source/src/interpreter.c:259:16
eval_stmt_value at /source/src/interpreter.c:194:23 [inlined]
eval_body at /source/src/interpreter.c:757:13
jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21
ijl_eval_thunk at /source/src/toplevel.c:764:18
jl_toplevel_eval_flex at /source/src/toplevel.c:708:26
jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15
jl_toplevel_eval_flex at /source/src/toplevel.c:680:27
ijl_toplevel_eval at /source/src/toplevel.c:778:12
ijl_toplevel_eval_in at /source/src/toplevel.c:823:13
eval at ./boot.jl:522:0 (pc: 1)
include_string at ./loading.jl:3132:0 (pc: 208)
include_string at ./loading.jl:3142:0 [inlined]
exec_options at ./client.jl:353:0 (pc: 813)
_start at ./client.jl:596:0 (pc: 295)
jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
true_main at /source/src/jlapi.c:985:29
jl_repl_entrypoint at /source/src/jlapi.c:1152:15
main at /source/cli/loader_exe.c:58:15
unknown function (ip: 0x7c6ae2e44249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 53 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0
ijl_task_get_next at /source/src/scheduler.c:524:34
wait at ./task.jl:1248:0 (pc: 107)
wait_forever at ./task.jl:1170:0 (pc: 4)
jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
start_task at /source/src/task.c:1276:19
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007cebc604ec20 Total snapshots: 722. Utilization: 0%
   ╎722 @Base/task.jl:1170  wait_forever()
721╎ 722 @Base/task.jl:1248  wait()


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0
ijl_task_get_next at /source/src/scheduler.c:524:34
wait at ./task.jl:1248:0 (pc: 107)
wait_forever at ./task.jl:1170:0 (pc: 4)
jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
start_task at /source/src/task.c:1276:19
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007e2837078e20 Total snapshots: 304. Utilization: 0%
   ╎304 @Base/task.jl:1170  wait_forever()
303╎ 304 @Base/task.jl:1248  wait()


[53] signal 15: Terminated
in expression starting at none:1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0
ijl_task_get_next at /source/src/scheduler.c:524:34
wait at ./task.jl:1248:0 (pc: 107)
wait_forever at ./task.jl:1170:0 (pc: 4)
jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
start_task at /source/src/task.c:1276:19
unknown function (ip: (nil)) at (unknown file)
Allocations: 42290300 (Pool: 42289909; Big: 391); GC: 34

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0
ijl_task_get_next at /source/src/scheduler.c:524:34
wait at ./task.jl:1248:0 (pc: 107)
wait_forever at ./task.jl:1170:0 (pc: 4)
jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
start_task at /source/src/task.c:1276:19
unknown function (ip: (nil)) at (unknown file)
Allocations: 26278052 (Pool: 26277224; Big: 828); GC: 24
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
error at ./error.jl:56:0 (pc: 6)
#schedule#625 at ./task.jl:1053:0 (pc: 71)
schedule at ./task.jl:1045:0 [inlined]
uv_writecb_task at ./stream.jl:1198:0 (pc: 11)
jlcapi_uv_writecb_task_512.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926:0
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227:0
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420:0
ijl_process_events at /source/src/jl_uv.c:397:21
process_events at ./libuv.jl:133:0 [inlined]
wait at ./task.jl:1235:0 (pc: 15)
uv_write at ./stream.jl:1079:0 (pc: 11)
unsafe_write at ./stream.jl:1152:0 (pc: 55)
write at ./strings/io.jl:237:0 [inlined]
print at ./strings/io.jl:239:0 (pc: 5)
jfptr_print_129.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
showerror at ./errorshow.jl:164:0 (pc: 2)
unknown function (ip: 0x7cebbe077c66) at (unknown file)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
_atexit at ./initdefs.jl:544:0 (pc: 211)
jfptr__atexit_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
ijl_atexit_hook at /source/src/init.c:264:17
jl_exit_thread0_cb at /source/src/signals-unix.c:678:5
jl_fake_signal_return at /opt/julia/bin/../lib/julia/libjulia-internal.so.1.14 (unknown line)
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0
ijl_task_get_next at /source/src/scheduler.c:524:34
wait at ./task.jl:1248:0 (pc: 107)
wait_forever at ./task.jl:1170:0 (pc: 4)
jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4345:23 [inlined]
ijl_apply_generic at /source/src/gf.c:4583:12
jl_apply at /source/src/julia.h:2405:12 [inlined]
start_task at /source/src/task.c:1276:19

PkgEval terminated after 2732.06s: test duration exceeded the time limit