Package evaluation to test MutualInformationImageRegistration on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-04T04:12:55.280 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.44s ################################################################################ # Installation # Installing MutualInformationImageRegistration... Resolving package versions... Installed CommonWorldInvalidations ─────────── v1.1.0 Installed Adapt ────────────────────────────── v4.7.0 Installed ComputedFieldTypes ───────────────── v0.1.0 Installed SLEEFPirates ─────────────────────── v0.6.46 Installed ManualMemory ─────────────────────── v0.1.8 Installed SIMDTypes ────────────────────────── v0.1.0 Installed BitTwiddlingConvenienceFunctions ─── v0.1.6 Installed VectorizationBase ────────────────── v0.21.74 Installed ArrayInterface ───────────────────── v7.27.0 Installed LoopVectorization ────────────────── v0.12.174 Installed Compat ───────────────────────────── v4.18.1 Installed CpuId ────────────────────────────── v0.3.1 Installed HostCPUFeatures ──────────────────── v0.1.18 Installed StaticArraysCore ─────────────────── v1.4.4 Installed OffsetArrays ─────────────────────── v1.17.0 Installed LayoutPointers ───────────────────── v0.1.17 Installed StaticArrays ─────────────────────── v1.9.18 Installed StaticArrayInterface ─────────────── v1.10.0 Installed PrecompileTools ──────────────────── v1.3.4 Installed FastHistograms ───────────────────── v0.2.1 Installed IfElse ───────────────────────────── v0.1.1 Installed SciMLPublic ──────────────────────── v1.2.1 Installed CloseOpenIntervals ───────────────── v0.1.13 Installed CPUSummary ───────────────────────── v0.2.7 Installed Static ───────────────────────────── v1.4.2 Installed Preferences ──────────────────────── v1.5.2 Installed MutualInformationImageRegistration ─ v0.1.5 Installed ThreadingUtilities ───────────────── v0.5.6 Installed PolyesterWeave ───────────────────── v0.2.2 Installed DocStringExtensions ──────────────── v0.9.5 Installed UnPack ───────────────────────────── v1.0.2 Updating `~/.julia/environments/v1.14/Project.toml` [f55eb597] + MutualInformationImageRegistration v0.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.7.0 [4fba245c] + ArrayInterface v7.27.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.1.0 [34da2185] + Compat v4.18.1 ⌅ [459fdd68] + ComputedFieldTypes v0.1.0 [adafc99b] + CpuId v0.3.1 [ffbed154] + DocStringExtensions v0.9.5 [06971c4e] + FastHistograms v0.2.1 [3e5b6fbb] + HostCPUFeatures v0.1.18 [615f187c] + IfElse v0.1.1 [10f19ff3] + LayoutPointers v0.1.17 [bdcacae8] + LoopVectorization v0.12.174 [d125e4d3] + ManualMemory v0.1.8 [f55eb597] + MutualInformationImageRegistration v0.1.5 [6fe1bfb0] + OffsetArrays v1.17.0 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.46 [431bcebd] + SciMLPublic v1.2.1 [aedffcd0] + Static v1.4.2 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [8290d209] + ThreadingUtilities v0.5.6 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.74 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 9.1 s ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.1 s ✓ MacroTools 0.6 s ✓ Reexport 1.5 s ✓ ManualMemory 1.6 s ✓ Adapt 1.3 s ✓ MappedArrays 1.4 s ✓ Statistics 0.9 s ✓ TensorCore 0.8 s ✓ SciMLPublic 0.9 s ✓ UnPack 427.9 s ✓ CommonWorldInvalidations 1.2 s ✓ StaticArraysCore 149.3 s ✓ OrderedCollections 0.5 s ✓ CustomUnitRanges 1.2 s ✓ HashArrayMappedTries 1.5 s ✓ DocStringExtensions 21.1 s ✓ AbstractFFTs 91.4 s ✓ OffsetArrays 0.9 s ✓ ComputationalResources 0.6 s ✓ IfElse 0.5 s ✓ SIMDTypes 1.2 s ✓ ChunkCodecCore 1.6 s ✓ Requires 2.6 s ✓ CpuId 32.5 s ✓ StructUtils 2.2 s ✓ Compat 34.3 s ✓ Preferences 0.9 s ✓ ComputedFieldTypes 4.1 s ✓ ThreadingUtilities 2.5 s ✓ ArrayInterface 43.5 s ✓ Adapt → AdaptSparseArraysExt 167.7 s ✓ FixedPointNumbers 41.7 s ✓ Statistics → SparseArraysExt 171.2 s ✓ DataStructures 1.3 s ✓ ScopedValues 58.9 s ✓ AbstractFFTs → AbstractFFTsTestExt 38.3 s ✓ StackViews 38.0 s ✓ OffsetArrays → OffsetArraysAdaptExt 38.8 s ✓ PaddedViews 38.8 s ✓ CatIndices 1.5 s ✓ ChunkCodecLibZlib 1.9 s ✓ ChunkCodecLibZstd 14.0 s ✓ FileIO 30.5 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 1.0 s ✓ Compat → CompatLinearAlgebraExt 31.8 s ✓ JLLWrappers 31.8 s ✓ PrecompileTools 0.7 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 41.4 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 40.8 s ✓ ColorTypes 38.6 s ✓ MosaicViews 9.4 s ✓ IntelOpenMP_jll 9.6 s ✓ oneTBB_jll 31.4 s ✓ FFTW_jll 358.3 s ✓ StaticArrays 67.9 s ✓ Parsers 337.1 s ✓ Static ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:162 ┌ Warning: Opening file with JLD2.MmapIO failed, falling back to IOStream └ @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:162 ERROR: LoadError: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:242  [2] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:174 [inlined]  [3] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:278 [inlined]  [4] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/loadsave.jl:1  [5] ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 410 running 1 of 1  signal (10): User defined signal 1 (::JLD2.var"##->###6"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/precompile.jl:3  [6] mktemp(fn::JLD2.var"##->###6"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [7] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [8] top-level scope  @ ~/.julia/packages/JLD2/qcxKY/src/precompile.jl:3  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [10] IncludeInto  @ ./Base.jl:327 [inlined]  [11] top-level scope  @ ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:562  [12] include(mod::Module, _path::String)  @ Base Base.jl:325  [13] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [14] top-level scope  @ stdin:5  [15] eval(m::Module, e::Any)  @ Core boot.jl:522  [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [17] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [18] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [19] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/JLD2/qcxKY/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/qcxKY/src/JLD2.jl:1 in expression starting at stdin:5  caused by: TypeError: in new, expected JLD2.HeaderMessageType, got a value of type Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}} Stacktrace:  [1] jlread(io::IOStream, ::Type{JLD2.HeaderMessage})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/types.jl:44  [2] read_header_message(f::JLD2.JLDFile{IOStream}, io::IOStream, header_version::UInt8, chunk_start::Int64, groupflags::UInt8)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/object_headers.jl:122  [3] iterate(itr::JLD2.HeaderMessageIterator{IOStream}, state::Nothing)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/object_headers.jl:217  [4] iterate(itr::JLD2.HeaderMessageIterator{IOStream})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/object_headers.jl:191 [inlined]  [5] load_group(f::JLD2.JLDFile{IOStream}, offset::JLD2.RelOffset)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/groups.jl:218  [6] initialize_fileobject!(f::JLD2.JLDFile{IOStream})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:264  [7] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO}; fallback::Type{IOStream}, compress::Bool, mmaparrays::Bool, typemap::Function, parallel_read::Bool, plain::Bool)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:239  [8] jldopen(fname::String, wr::Bool, create::Bool, truncate::Bool, iotype::Type{JLD2.MmapIO})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:174 [inlined]  [9] jldopen(fname::String, mode::String; iotype::Type{JLD2.MmapIO}, kwargs::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:278 [inlined]  [10] jldopen(f::Function, args::String; kws::@Kwargs{})  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/loadsave.jl:1  [11] (::JLD2.var"##->###6"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol})(path::String, ::IOStream)  @ JLD2 ~/.julia/packages/JLD2/qcxKY/src/precompile.jl:3  [12] mktemp(fn::JLD2.var"##->###6"{Int64, Float64, Vector{Float64}, Matrix{ComplexF64}, Dict{String, Int64}, String, NTuple{5, Int64}, Vector{Float64}, Symbol}, parent::String)  @ Base.Filesystem file.jl:920  [13] mktemp(fn::Function)  @ Base.Filesystem file.jl:918  [14] top-level scope  @ ~/.julia/packages/JLD2/qcxKY/src/precompile.jl:3  [15] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [16] IncludeInto  @ ./Base.jl:327 [inlined]  [17] top-level scope  @ ~/.julia/packages/JLD2/qcxKY/src/JLD2.jl:562  [18] include(mod::Module, _path::String)  @ Base Base.jl:325  [19] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core boot.jl:522  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [23] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [25] _start()  @ Base client.jl:596 ✗ JLD2 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 102 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007b14e90dde10 Total snapshots: 372. Utilization: 0% ╎372 @Base/task.jl:1170 wait_forever() 371╎ 372 @Base/task.jl:1248 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000076a4cda7e860 Total snapshots: 323. Utilization: 0% ╎323 @Base/task.jl:1170 wait_forever() 322╎ 323 @Base/task.jl:1248 wait() [102] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 15255370 (Pool: 15254564; Big: 806); GC: 19 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:56:0 (pc: 6) #schedule#625 at ./task.jl:1053:0 (pc: 71) schedule at ./task.jl:1045:0 [inlined] uv_writecb_task at ./stream.jl:1198:0 (pc: 11) jlcapi_uv_writecb_task_512.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926:0 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227:0 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420:0 ijl_process_events at /source/src/jl_uv.c:397:21 process_events at ./libuv.jl:133:0 [inlined] wait at ./task.jl:1235:0 (pc: 15) uv_write at ./stream.jl:1079:0 (pc: 11) PkgEval terminated after 2731.7s: test duration exceeded the time limit