Package evaluation to test MatrixImpute on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-04T03:41:27.888 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.28s ################################################################################ # Installation # Installing MatrixImpute... Resolving package versions... Installed OrderedCollections ────────── v1.8.2 Installed InlineStrings ─────────────── v1.4.5 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed TensorToolbox ─────────────── v1.0.1 Installed DataStructures ────────────── v0.18.22 Installed DataAPI ───────────────────── v1.16.0 Installed MatrixImpute ──────────────── v0.3.2 Installed StatsBase ─────────────────── v0.33.21 Installed Statistics ────────────────── v1.11.1 Installed SentinelArrays ────────────── v1.4.10 Installed InvertedIndices ───────────── v1.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed IrrationalConstants ───────── v0.2.6 Installed StatsAPI ──────────────────── v1.8.0 Installed StringManipulation ────────── v0.4.4 Installed PrecompileTools ───────────── v1.3.4 Installed LogExpFunctions ───────────── v0.3.29 Installed Tables ────────────────────── v1.13.0 Installed Arpack_jll ────────────────── v3.5.2+0 Installed Arpack ────────────────────── v0.5.4 Installed PrettyTables ──────────────── v3.3.2 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed DataFrames ────────────────── v1.8.2 Installed JLLWrappers ───────────────── v1.8.0 Installed Preferences ───────────────── v1.5.2 Installed SortingAlgorithms ─────────── v1.2.3 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed DocStringExtensions ───────── v0.9.5 Installing 1 artifacts Installed artifact Arpack 110.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [86adb855] + MatrixImpute v0.3.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9fca2a] + Arpack v0.5.4 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [86adb855] + MatrixImpute v0.3.2 [e1d29d7a] + Missings v1.2.0 ⌅ [bac558e1] + OrderedCollections v1.8.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.3.2 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.10 [a2af1166] + SortingAlgorithms v1.2.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [892a3eda] + StringManipulation v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.13.0 [9c690861] + TensorToolbox v1.0.1 ⌅ [68821587] + Arpack_jll v3.5.2+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 8.8 s ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 312.7 s ✓ InlineStrings 0.6 s ✓ Reexport 1.3 s ✓ Statistics 1.1 s ✓ DataAPI 2.7 s ✓ IrrationalConstants 0.6 s ✓ DataValueInterfaces 0.8 s ✓ StatsAPI 152.4 s ✓ OrderedCollections 57.8 s ✓ InvertedIndices 1.5 s ✓ DocStringExtensions 0.5 s ✓ IteratorInterfaceExtensions 26.7 s ✓ LaTeXStrings 2.7 s ✓ Crayons 181.8 s ✓ SentinelArrays 2.2 s ✓ Compat 32.0 s ✓ Preferences WARNING: method definition for ttm at /home/pkgeval/.julia/packages/TensorToolbox/6LauI/src/ttensor.jl:862 declares type variable T but does not use it. 2.5 s ✓ TensorToolbox 41.7 s ✓ Statistics → SparseArraysExt 55.9 s ✓ Missings 23.3 s ✓ PooledArrays 1.8 s ✓ LogExpFunctions 0.7 s ✓ TableTraits 0.9 s ✓ Compat → CompatLinearAlgebraExt 31.9 s ✓ JLLWrappers 31.4 s ✓ PrecompileTools 149.5 s ✓ Tables 278.9 s ✓ DataStructures 31.6 s ✓ Arpack_jll 84.5 s ✓ StringManipulation 40.4 s ✓ SortingAlgorithms 31.7 s ✓ Arpack 192.1 s ✓ PrettyTables ERROR: LoadError: Creating a new global in closed module `Base` (`#kw_body#_#0`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [3] top-level scope  @ ~/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:250  [4] include(mod::Module, _path::String)  @ Base Base.jl:325  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core boot.jl:522  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [9] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [11] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522 in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:1 in expression starting at stdin:5 ✗ StatsBase 275.1 s ✓ DataFrames ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118  [12] top-level scope  @ ~/.julia/packages/MatrixImpute/60aTl/src/MatrixImpute.jl:5  [13] include(mod::Module, _path::String)  @ Base Base.jl:325  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core boot.jl:522  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [18] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [20] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MatrixImpute/60aTl/src/MatrixImpute.jl:1 in expression starting at stdin:5 ✗ MatrixImpute 33 dependencies successfully precompiled in 2209 seconds. 18 already precompiled. 1 dependency had output during precompilation: ┌ TensorToolbox │ WARNING: method definition for ttm at /home/pkgeval/.julia/packages/TensorToolbox/6LauI/src/ttensor.jl:862 declares type variable T but does not use it. └ Precompilation completed after 2256.34s ################################################################################ # Testing # Testing MatrixImpute Status `/tmp/jl_lhhVOM/Project.toml` [7d9fca2a] Arpack v0.5.4 [a93c6f00] DataFrames v1.8.2 [86adb855] MatrixImpute v0.3.2 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [9c690861] TensorToolbox v1.0.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 Status `/tmp/jl_lhhVOM/Manifest.toml` [7d9fca2a] Arpack v0.5.4 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [86adb855] MatrixImpute v0.3.2 [e1d29d7a] Missings v1.2.0 ⌅ [bac558e1] OrderedCollections v1.8.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [189a3867] Reexport v1.2.2 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [892a3eda] StringManipulation v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.13.0 [9c690861] TensorToolbox v1.0.1 ⌅ [68821587] Arpack_jll v3.5.2+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.5+2 [4536629a] OpenBLAS_jll v0.3.33+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: Creating a new global in closed module `Base` (`#kw_body#_#0`) breaks incremental compilation because the side effects will not be permanent. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base Base.jl:326  [3] top-level scope  @ ~/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:250  [4] include(mod::Module, _path::String)  @ Base Base.jl:325  [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core boot.jl:522  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [9] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [11] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522 in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base error.jl:56  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base loading.jl:2837  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base loading.jl:2685  [4] macro expansion  @ loading.jl:2599 [inlined]  [5] macro expansion  @ lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base loading.jl:2563  [7] require(into::Module, mod::Symbol)  @ Base loading.jl:2539 [inlined]  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)  @ Base module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base module.jl:60  [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base module.jl:101  [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})  @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118  [12] top-level scope  @ ~/.julia/packages/MatrixImpute/60aTl/src/MatrixImpute.jl:5  [13] include(mod::Module, _path::String)  @ Base Base.jl:325  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base loading.jl:3303  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core boot.jl:522  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base loading.jl:3132  [18] include_string(m::Module, txt::String, fname::String)  @ Base loading.jl:3142 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base client.jl:353  [20] _start()  @ Base client.jl:596 in expression starting at /home/pkgeval/.julia/packages/MatrixImpute/60aTl/src/MatrixImpute.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ StatsBase │ ERROR: LoadError: Creating a new global in closed module `Base` (`#kw_body#_#0`) breaks incremental compilation because the side effects will not be permanent. │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:326 │ [3] top-level scope │ @ ~/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:250 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:325 │ [5] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base loading.jl:3303 │ [6] top-level scope │ @ stdin:5 │ [7] eval(m::Module, e::Any) │ @ Core boot.jl:522 │ [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base loading.jl:3132 │ [9] include_string(m::Module, txt::String, fname::String) │ @ Base loading.jl:3142 [inlined] │ [10] exec_options(opts::Base.JLOptions) │ @ Base client.jl:353 │ [11] _start() │ @ Base client.jl:596 │ in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/scalarstats.jl:522 │ in expression starting at /home/pkgeval/.julia/packages/StatsBase/XgjIN/src/StatsBase.jl:1 │ in expression starting at stdin:5 └ ┌ MatrixImpute │ [Output was shown above] └ ERROR: LoadError: The following 2 packages failed to precompile: StatsBase Failed to precompile StatsBase [2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91] to "/home/pkgeval/.julia/compiled/v1.14/StatsBase/jl_XgDllm" (ProcessExited(1)). MatrixImpute Failed to precompile MatrixImpute [86adb855-6620-4b42-899a-fdd8a58d2ebe] to "/home/pkgeval/.julia/compiled/v1.14/MatrixImpute/jl_7B8aKo" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/MatrixImpute/60aTl/test/runtests.jl:1 Testing failed after 184.7s ERROR: LoadError: Package MatrixImpute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [8] include(mod::Module, _path::String) @ Base Base.jl:325 [9] exec_options(opts::Base.JLOptions) @ Base client.jl:355 [10] _start() @ Base client.jl:596 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2492.1s: package fails to precompile