Package evaluation to test GeneFinder on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-03T17:30:39.881


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 15.35s


################################################################################
# Installation
#

Installing GeneFinder...
   Resolving package versions...
   Installed Twiddle ────────── v1.1.2
   Installed BioMarkovChains ── v1.0.0
   Installed VectorizedKmers ── v0.9.2
   Installed BioSymbols ─────── v5.2.0
   Installed Kmers ──────────── v1.2.0
   Installed Preferences ────── v1.5.2
   Installed PrecompileTools ── v1.3.4
   Installed BioSequences ───── v3.4.2
   Installed StaticArraysCore ─ v1.4.4
   Installed IterTools ──────── v1.10.0
   Installed GeneFinder ─────── v0.8.0
    Updating `~/.julia/environments/v1.14/Project.toml`
  [2bc6ee46] + GeneFinder v0.8.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [f861b655] + BioMarkovChains v1.0.0
⌅ [7e6ae17a] + BioSequences v3.4.2
  [3c28c6f8] + BioSymbols v5.2.0
  [2bc6ee46] + GeneFinder v0.8.0
  [c8e1da08] + IterTools v1.10.0
  [445028e4] + Kmers v1.2.0
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [1e83bf80] + StaticArraysCore v1.4.4
  [7200193e] + Twiddle v1.1.2
  [2ef45bd6] + VectorizedKmers v0.9.2
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.79s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling project...
   8.9 s  ✓ TestEnv
  1 dependency successfully precompiled in 9 seconds. 27 already precompiled.

Precompiling package dependencies...
Precompiling project...
   1.4 s  ✓ StaticArraysCore
   0.8 s  ✓ Twiddle
 408.1 s  ✓ IterTools
 284.6 s  ✓ StringViews
  55.0 s  ✓ TranscodingStreams
   2.0 s  ✓ Compat
  31.6 s  ✓ Preferences
   0.9 s  ✓ VectorizedKmers
  39.2 s  ✓ BioGenerics
   1.0 s  ✓ Compat → CompatLinearAlgebraExt
  31.4 s  ✓ PrecompileTools
  50.2 s  ✓ Aqua
 123.5 s  ✓ BioSymbols
 185.5 s  ✓ Automa
ERROR: LoadError: Creating a new global in closed module `Base` (`##->###0`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] eval_closure_type(mod::Module, closure_type_name::Symbol, field_names::Core.SimpleVector, field_is_box::Core.SimpleVector)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:96
  [2] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/counting.jl:129
  [3] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [4] _eval(mod::Module, iter::Base.JuliaLowering.LoweringIterator{Dict{Symbol, Dict{Int64, Any}}}; soft_scope::Nothing)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:745
  [5] eval(mod::Module, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}; macro_world::UInt64, soft_scope::Nothing, opts::@Kwargs{expr_compat_mode::Bool})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:718 [inlined]
  [6] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/counting.jl:129
  [7] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [8] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/BioSequences.jl:224
  [9] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [10] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [11] top-level scope
    @ stdin:5
 [12] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [14] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [15] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [16] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/BioSequences/tfveE/src/counting.jl:129
in expression starting at /home/pkgeval/.julia/packages/BioSequences/tfveE/src/BioSequences.jl:8
in expression starting at stdin:5
              ✗ BioSequences
 108.7 s  ✓ FASTX
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/Kmers/SM8Rg/src/Kmers.jl:97
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Kmers/SM8Rg/src/Kmers.jl:8
in expression starting at stdin:5
              ✗ Kmers
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_using(to::Module, path::Expr, flags::UInt8)
    @ Base module.jl:137 [inlined]
 [11] eval_using(to::Module, path::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:130
 [12] top-level scope
    @ ~/.julia/packages/VectorizedKmers/ReHLs/ext/BioSequencesExt.jl:3
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/VectorizedKmers/ReHLs/ext/BioSequencesExt.jl:1
in expression starting at stdin:5
              ✗ VectorizedKmers → BioSequencesExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:4
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/ext/BioSequencesExt.jl:1
in expression starting at stdin:5
              ✗ FASTX → BioSequencesExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/Kmers/SM8Rg/ext/RandomExt.jl:5
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Kmers/SM8Rg/ext/RandomExt.jl:1
in expression starting at stdin:5
              ✗ Kmers → RandomExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("445028e4-d31f-4f27-89ad-17affd83fc22"), "Kmers") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)
    @ Base module.jl:101
 [11] eval_import(imported::Bool, to::Module, from::Expr, paths::Expr)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/Kmers/SM8Rg/ext/StringViewsExt.jl:4
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/Kmers/SM8Rg/ext/StringViewsExt.jl:1
in expression starting at stdin:5
              ✗ Kmers → StringViewsExt
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/BioMarkovChains/gANgD/src/BioMarkovChains.jl:3
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/BioMarkovChains/gANgD/src/BioMarkovChains.jl:1
in expression starting at stdin:5
              ✗ BioMarkovChains
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("7e6ae17a-c86d-528c-b3b9-7f778a29fe59"), "BioSequences") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base error.jl:56
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base loading.jl:2837
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base loading.jl:2685
  [4] macro expansion
    @ loading.jl:2599 [inlined]
  [5] macro expansion
    @ lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base loading.jl:2563
  [7] require(into::Module, mod::Symbol)
    @ Base loading.jl:2539 [inlined]
  [8] eval_import_path(at::Module, from::Nothing, path::Expr, keyword::String)
    @ Base module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base module.jl:60
 [10] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base module.jl:101
 [11] eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:118
 [12] top-level scope
    @ ~/.julia/packages/GeneFinder/XNkZl/src/GeneFinder.jl:3
 [13] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [18] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [20] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/GeneFinder/XNkZl/src/GeneFinder.jl:1
in expression starting at stdin:5
              ✗ GeneFinder
  15 dependencies successfully precompiled in 1483 seconds. 30 already precompiled.

Precompilation completed after 1531.49s


################################################################################
# Testing
#

     Testing GeneFinder
      Status `/tmp/jl_98yFD7/Project.toml`
  [4c88cf16] Aqua v0.8.16
  [f861b655] BioMarkovChains v1.0.0
⌅ [7e6ae17a] BioSequences v3.4.2
  [c2308a5c] FASTX v2.1.7
  [2bc6ee46] GeneFinder v0.8.0
  [445028e4] Kmers v1.2.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_98yFD7/Manifest.toml`
  [4c88cf16] Aqua v0.8.16
  [67c07d97] Automa v1.2.0
  [47718e42] BioGenerics v0.1.5
  [f861b655] BioMarkovChains v1.0.0
⌅ [7e6ae17a] BioSequences v3.4.2
  [3c28c6f8] BioSymbols v5.2.0
  [34da2185] Compat v4.18.1
  [c2308a5c] FASTX v2.1.7
  [2bc6ee46] GeneFinder v0.8.0
  [c8e1da08] IterTools v1.10.0
  [445028e4] Kmers v1.2.0
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [1e83bf80] StaticArraysCore v1.4.4
⌅ [354b36f9] StringViews v1.3.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [2ef45bd6] VectorizedKmers v0.9.2
  [0dad84c5] ArgTools v1.2.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.5+2
  [deac9b47] LibCURL_jll v8.21.0+0
  [e37daf67] LibGit2_jll v1.9.4+0
  [29816b5a] LibSSH2_jll v1.11.101+0
  [14a3606d] MozillaCACerts_jll v2026.5.14
  [458c3c95] OpenSSL_jll v3.5.7+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.69.0+0
  [3f19e933] p7zip_jll v17.8.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: Creating a new global in closed module `Base` (`##->###0`) breaks incremental compilation because the side effects will not be permanent.
Stacktrace:
  [1] eval_closure_type(mod::Module, closure_type_name::Symbol, field_names::Core.SimpleVector, field_is_box::Core.SimpleVector)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/runtime.jl:96
  [2] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/counting.jl:129
  [3] eval(m::Module, e::Any)
    @ Core boot.jl:522
  [4] _eval(mod::Module, iter::Base.JuliaLowering.LoweringIterator{Dict{Symbol, Dict{Int64, Any}}}; soft_scope::Nothing)
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:745
  [5] eval(mod::Module, ex::Base.JuliaSyntax.SyntaxTree{Dict{Symbol, Dict{Int64, Any}}}; macro_world::UInt64, soft_scope::Nothing, opts::@Kwargs{expr_compat_mode::Bool})
    @ Base.JuliaLowering /source/usr/share/julia/JuliaLowering/src/eval.jl:718 [inlined]
  [6] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/counting.jl:129
  [7] include(mapexpr::Function, mod::Module, _path::String)
    @ Base Base.jl:326
  [8] top-level scope
    @ ~/.julia/packages/BioSequences/tfveE/src/BioSequences.jl:224
  [9] include(mod::Module, _path::String)
    @ Base Base.jl:325
 [10] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base loading.jl:3303
 [11] top-level scope
    @ stdin:5
 [12] eval(m::Module, e::Any)
    @ Core boot.jl:522
 [13] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base loading.jl:3132
 [14] include_string(m::Module, txt::String, fname::String)
    @ Base loading.jl:3142 [inlined]
 [15] exec_options(opts::Base.JLOptions)
    @ Base client.jl:353
 [16] _start()
    @ Base client.jl:596
in expression starting at /home/pkgeval/.julia/packages/BioSequences/tfveE/src/counting.jl:129
in expression starting at /home/pkgeval/.julia/packages/BioSequences/tfveE/src/BioSequences.jl:8
in expression starting at stdin:5
  1 dependency had output during precompilation:
┌ BioSequences
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

BioSequences 
Failed to precompile BioSequences [7e6ae17a-c86d-528c-b3b9-7f778a29fe59] to "/home/pkgeval/.julia/compiled/v1.14/BioSequences/jl_yDzlSs" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/GeneFinder/XNkZl/test/runtests.jl:1

Testing failed after 189.18s

ERROR: LoadError: Package GeneFinder errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3247
  [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
  [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
  [7] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
  [8] include(mod::Module, _path::String)
    @ Base Base.jl:325
  [9] exec_options(opts::Base.JLOptions)
    @ Base client.jl:355
 [10] _start()
    @ Base client.jl:596
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 1769.13s: package fails to precompile