Package evaluation to test Crystallography on Julia 1.14.0-DEV.2593 (15c2b67521*) started at 2026-07-03T19:04:06.048 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.39s ################################################################################ # Installation # Installing Crystallography... Resolving package versions... Installed Compat ────────────── v4.18.1 Installed StructEquality ────── v2.1.0 Installed Preferences ───────── v1.5.2 Installed PrecompileTools ───── v1.3.4 Installed UnitfulAtomic ─────── v1.0.0 Installed StaticArrays ──────── v1.9.18 Installed StaticArraysCore ──── v1.4.4 Installed Unitful ───────────── v1.28.0 Installed MLStyle ───────────── v0.4.17 Installed Crystallography ───── v0.6.0 Installed CrystallographyBase ─ v0.10.1 Installed Functors ──────────── v0.4.12 Installed EnumX ─────────────── v1.0.7 Installed Mendeleev ─────────── v1.0.3 Updating `~/.julia/environments/v1.14/Project.toml` [3bff3928] + Crystallography v0.6.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [3bff3928] + Crystallography v0.6.0 ⌅ [93b1d1cd] + CrystallographyBase v0.10.1 [4e289a0a] + EnumX v1.0.7 ⌅ [d9f16b24] + Functors v0.4.12 [d8e11817] + MLStyle v0.4.17 [c116f080] + Mendeleev v1.0.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [6ec83bb0] + StructEquality v2.1.0 [1986cc42] + Unitful v1.28.0 [a7773ee8] + UnitfulAtomic v1.0.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.5+2 [4536629a] + OpenBLAS_jll v0.3.33+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.96s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 8.9 s ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 4.3 s ✓ MacroTools 2.6 s ✓ IrrationalConstants 1.2 s ✓ StaticArraysCore 151.9 s ✓ OrderedCollections 40.4 s ✓ Format 26.9 s ✓ MLStyle 1.5 s ✓ DocStringExtensions 40.8 s ✓ Functors 0.9 s ✓ EnumX 1.0 s ✓ TermInterface 0.7 s ✓ CommonSolve 26.6 s ✓ LaTeXStrings 0.7 s ✓ CommonEq 1.7 s ✓ Requires 429.7 s ✓ Unitful 2.0 s ✓ Compat 32.6 s ✓ JLLWrappers 33.6 s ✓ RecipesBase 581.3 s ✓ PyCall 31.0 s ✓ StructUtils → StructUtilsStaticArraysCoreExt 361.7 s ✓ StaticArrays 1.8 s ✓ LogExpFunctions 71.1 s ✓ Unitful → PrintfExt 0.9 s ✓ Compat → CompatLinearAlgebraExt 32.4 s ✓ OpenSpecFun_jll 32.5 s ✓ JpegTurbo_jll 44.3 s ✓ UnitfulAtomic 1.2 s ✓ StructEquality 108.6 s ✓ SpecialFunctions 32.1 s ✓ Ghostscript_jll 57.2 s ✓ Mendeleev  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 420 running 1 of 1  signal (10): User defined signal 1 _ZL18isBlockInLCSSAFormRKN4llvm4LoopERKNS_10BasicBlockERKNS_13DominatorTreeEb at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZNK4llvm4Loop11isLCSSAFormERKNS_13DominatorTreeEb at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZL13formLCSSAImplRN4llvm4LoopERKNS_13DominatorTreeEPKNS_8LoopInfoEPNS_15ScalarEvolutionERNS_13SmallDenseMapIPS0_NS_11SmallVectorIPNS_10BasicBlockELj1EEELj4ENS_12DenseMapInfoISB_vEENS_6detail12DenseMapPairISB_SF_EEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm9LCSSAPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) run at /source/src/pipeline.cpp:989:12 operator() at /source/src/jitlayers.cpp:1271:17 operator() at /source/src/jitlayers.cpp:1409:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2360:18 materialize at /source/src/jitlayers.cpp:876:31 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:361:11 _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.21.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2059:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:511:39 jl_compile_method_very_internal at /source/src/gf.c:3927:27 _jl_invoke at /source/src/gf.c:4337:16 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] ijl_lower at /source/src/ast.c:1271:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:594:31 jl_eval_module_expr at /source/src/toplevel.c:262:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661:27 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 _include at ./loading.jl:3192:0 (pc: 122) include at ./Base.jl:325:0 (pc: 1) include_package_for_output at ./loading.jl:3303:0 (pc: 848) jfptr_include_package_for_output_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:757:13 jl_interpret_toplevel_thunk at /source/src/interpreter.c:947:21 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:708:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:598:15 jl_toplevel_eval_flex at /source/src/toplevel.c:680:27 ijl_toplevel_eval at /source/src/toplevel.c:778:12 ijl_toplevel_eval_in at /source/src/toplevel.c:823:13 eval at ./boot.jl:522:0 (pc: 1) include_string at ./loading.jl:3132:0 (pc: 208) include_string at ./loading.jl:3142:0 [inlined] exec_options at ./client.jl:353:0 (pc: 813) _start at ./client.jl:596:0 (pc: 295) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] true_main at /source/src/jlapi.c:985:29 jl_repl_entrypoint at /source/src/jlapi.c:1152:15 main at /source/cli/loader_exe.c:58:15 unknown function (ip: 0x768b2dc44249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)   ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ==============================================================  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 51 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000768478addf00 Total snapshots: 323. Utilization: 0% ╎323 @Base/task.jl:1170 wait_forever() 322╎ 323 @Base/task.jl:1248 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007aeb052f8e20 Total snapshots: 326. Utilization: 0% ╎326 @Base/task.jl:1170 wait_forever() 325╎ 326 @Base/task.jl:1248 wait() [51] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 24790701 (Pool: 24789966; Big: 735); GC: 23 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 unknown function (ip: (nil)) at (unknown file) Allocations: 15974627 (Pool: 15973913; Big: 714); GC: 15 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:56:0 (pc: 6) #schedule#625 at ./task.jl:1053:0 (pc: 71) schedule at ./task.jl:1045:0 [inlined] uv_writecb_task at ./stream.jl:1198:0 (pc: 11) jlcapi_uv_writecb_task_512.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926:0 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227:0 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420:0 ijl_process_events at /source/src/jl_uv.c:397:21 process_events at ./libuv.jl:133:0 [inlined] wait at ./task.jl:1235:0 (pc: 15) uv_write at ./stream.jl:1079:0 (pc: 11) unsafe_write at ./stream.jl:1152:0 (pc: 55) write at ./strings/io.jl:237:0 [inlined] print at ./strings/io.jl:239:0 (pc: 5) jfptr_print_129.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 showerror at ./errorshow.jl:164:0 (pc: 2) unknown function (ip: 0x768477fc2476) at (unknown file) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 _atexit at ./initdefs.jl:544:0 (pc: 211) jfptr__atexit_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] ijl_atexit_hook at /source/src/init.c:264:17 jl_exit_thread0_cb at /source/src/signals-unix.c:678:5 jl_fake_signal_return at /opt/julia/bin/../lib/julia/libjulia-internal.so.1.14 (unknown line) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:524:34 wait at ./task.jl:1248:0 (pc: 107) wait_forever at ./task.jl:1170:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4345:23 [inlined] ijl_apply_generic at /source/src/gf.c:4583:12 jl_apply at /source/src/julia.h:2405:12 [inlined] start_task at /source/src/task.c:1276:19 PkgEval terminated after 2731.75s: test duration exceeded the time limit