Package evaluation of BioMakie on Julia 1.13.0-DEV.1189 (111bc9af8b*) started at 2025-09-23T01:51:29.133 ################################################################################ # Set-up # Set-up completed after 0.21s ################################################################################ # Installation # Installing BioMakie... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed libass_jll ────────────────── v0.17.4+0 Installed Libuuid_jll ───────────────── v2.41.1+0 Installed libaom_jll ────────────────── v3.12.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed ImageIO ───────────────────── v0.6.9 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Extents ───────────────────── v0.1.6 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed NearestNeighbors ──────────── v0.4.22 Installed OrderedCollections ────────── v1.8.1 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed TransmuteDims ─────────────── v0.1.17 Installed Colorfy ───────────────────── v1.1.2 Installed TensorCast ────────────────── v0.4.9 Installed ChainRules ────────────────── v1.72.5 Installed Distances ─────────────────── v0.10.12 Installed NaNMath ───────────────────── v1.1.3 Installed Graphics ──────────────────── v1.1.3 Installed Giflib_jll ────────────────── v5.2.3+0 Installed StaticArrayInterface ──────── v1.8.0 Installed FileIO ────────────────────── v1.17.0 Installed QuadGK ────────────────────── v2.11.2 Installed PairwiseListMatrices ──────── v0.11.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed libinchi_jll ──────────────── v1.6.0+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed ScopedValues ──────────────── v1.5.0 Installed AdaptivePredicates ────────── v1.2.0 Installed PackageExtensionCompat ────── v1.0.2 Installed BioAlignments ─────────────── v3.1.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed Hyperscript ───────────────── v0.0.5 Installed InverseFunctions ──────────── v0.1.17 Installed Preferences ───────────────── v1.5.0 Installed Missings ──────────────────── v1.2.0 Installed Static ────────────────────── v1.2.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed TableTraits ───────────────── v1.0.1 Installed GLMakie ───────────────────── v0.11.11 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed Grisu ─────────────────────── v1.0.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed Format ────────────────────── v1.3.7 Installed SortingAlgorithms ─────────── v1.2.2 Installed RangeArrays ───────────────── v0.3.2 Installed CRlibm ────────────────────── v1.0.2 Installed Indexing ──────────────────── v1.1.1 Installed Inflate ───────────────────── v0.1.5 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.1 Installed URIs ──────────────────────── v1.6.1 Installed DataStructures ────────────── v0.18.22 Installed Quaternions ───────────────── v0.7.6 Installed DiffResults ───────────────── v1.1.0 Installed StridedViews ──────────────── v0.4.1 Installed Packing ───────────────────── v0.5.1 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.14.0 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed MakieCore ─────────────────── v0.9.5 Installed ArnoldiMethod ─────────────── v0.4.0 Installed DelimitedFiles ────────────── v1.9.1 Installed LazyModules ───────────────── v0.3.1 Installed MathTeXEngine ─────────────── v0.6.6 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed UnicodeFun ────────────────── v0.4.1 Installed StatsBase ─────────────────── v0.34.6 Installed x264_jll ──────────────────── v10164.0.1+0 Installed Cairo ─────────────────────── v1.1.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Observables ───────────────── v0.5.5 Installed Zygote ────────────────────── v0.7.10 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed Xorg_libXfixes_jll ────────── v6.0.1+0 Installed DataValueInterfaces ───────── v1.0.0 Installed TransformsBase ────────────── v1.6.0 Installed ArrayInterface ────────────── v7.20.0 Installed LoggingExtras ─────────────── v1.1.0 Installed CommonSubexpressions ──────── v0.3.1 Installed CEnum ─────────────────────── v0.5.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed RealDot ───────────────────── v0.1.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed libdecor_jll ──────────────── v0.2.2+0 Installed GPUArraysCore ─────────────── v0.2.0 Installed IrrationalConstants ───────── v0.2.4 Installed Expat_jll ─────────────────── v2.7.1+0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed ColorVectorSpace ──────────── v0.11.0 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed DataValues ────────────────── v0.4.13 Installed StableRNGs ────────────────── v1.0.3 Installed RoundingEmulator ──────────── v0.2.1 Installed HTTP ──────────────────────── v1.10.17 Installed ImageMetadata ─────────────── v0.9.10 Installed Interpolations ────────────── v0.15.1 Installed ImageShow ─────────────────── v0.3.8 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed BitFlags ──────────────────── v0.1.9 Installed Scratch ───────────────────── v1.3.0 Installed FASTX ─────────────────────── v2.1.7 Installed libsixel_jll ──────────────── v1.10.5+0 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed SimpleBufferStream ────────── v1.2.0 Installed ShaderAbstractions ────────── v0.5.0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PDMats ────────────────────── v0.11.35 Installed GZip ──────────────────────── v0.6.2 Installed NamedArrays ───────────────── v0.10.4 Installed ImageCore ─────────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed BioSequences ──────────────── v3.5.0 Installed PNGFiles ──────────────────── v0.4.4 Installed IntervalTrees ─────────────── v1.1.0 Installed CircularArrays ────────────── v1.4.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed ForwardDiff ───────────────── v1.2.1 Installed ColorSchemes ──────────────── v3.31.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed LightXML ──────────────────── v0.9.2 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.2 Installed CoordRefSystems ───────────── v0.18.10 Installed StringViews ───────────────── v1.3.5 Installed KernelDensity ─────────────── v0.6.10 Installed TiledIteration ────────────── v0.5.0 Installed AliasTables ───────────────── v1.1.3 Installed GLFW ──────────────────────── v3.4.5 Installed SplitApplyCombine ─────────── v1.2.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed SparseInverseSubset ───────── v0.1.2 Installed HashArrayMappedTries ──────── v0.2.0 Installed MolecularGraph ────────────── v0.18.0 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed SIMD ──────────────────────── v3.7.1 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Netpbm ────────────────────── v1.1.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed MeshIO ────────────────────── v0.5.3 Installed ImageAxes ─────────────────── v0.6.12 Installed StaticArraysCore ──────────── v1.4.3 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed Colors ────────────────────── v0.13.1 Installed AbstractFFTs ──────────────── v1.5.0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed StaticArrays ──────────────── v1.9.15 Installed QOI ───────────────────────── v1.0.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed AxisAlgorithms ────────────── v1.1.0 Installed Glib_jll ──────────────────── v2.86.0+0 Installed Requires ──────────────────── v1.3.1 Installed ColorTypes ────────────────── v0.12.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed BaseDirs ──────────────────── v1.3.2 Installed AutoHashEquals ────────────── v2.2.0 Installed Distributions ─────────────── v0.25.120 Installed FreeTypeAbstraction ───────── v0.10.8 Installed FilePaths ─────────────────── v0.8.3 Installed Rmath ─────────────────────── v0.8.0 Installed StatsFuns ─────────────────── v1.5.0 Installed Unitful ───────────────────── v1.25.0 Installed BioGenerics ───────────────── v0.1.5 Installed BioMakie ──────────────────── v0.4.4 Installed GridLayoutBase ────────────── v0.11.2 Installed IRTools ───────────────────── v0.4.15 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed SignedDistanceFields ──────── v0.4.0 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed ZygoteRules ───────────────── v0.2.7 Installed x265_jll ──────────────────── v4.1.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed StructTypes ───────────────── v1.11.0 Installed ExactPredicates ───────────── v2.2.8 Installed Pango_jll ─────────────────── v1.56.4+0 Installed Graphs ────────────────────── v1.13.1 Installed IterTools ─────────────────── v1.10.0 Installed Lazy ──────────────────────── v0.15.1 Installed Dictionaries ──────────────── v0.4.5 Installed TiffImages ────────────────── v0.11.6 Installed ModernGL ──────────────────── v1.1.8 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed FilePathsBase ─────────────── v0.9.24 Installed PaddedViews ───────────────── v0.5.12 Installed Dbus_jll ──────────────────── v1.16.2+0 Installed BioStructures ─────────────── v4.7.0 Installed Adapt ─────────────────────── v4.3.0 Installed ConstructionBase ──────────── v1.6.0 Installed Meshes ────────────────────── v0.53.30 Installed HypergeometricFunctions ───── v0.3.28 Installed Libmount_jll ──────────────── v2.41.1+0 Installed TriplotBase ───────────────── v0.1.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Compat ────────────────────── v4.18.0 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.3 Installed TensorCore ────────────────── v0.1.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.7.1 Installed StringEncodings ───────────── v0.3.7 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.11.0 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.5.0 Installed WebP ──────────────────────── v0.1.3 Installed Animations ────────────────── v0.4.2 Installed BioSymbols ────────────────── v5.2.0 Installed TableTraitsUtils ──────────── v1.0.2 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed Ratios ────────────────────── v0.4.5 Installed TupleTools ────────────────── v1.6.0 Installed ChainRulesCore ────────────── v1.26.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed JSON3 ─────────────────────── v1.14.3 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed GLFW_jll ──────────────────── v3.4.0+2 Installed LAME_jll ──────────────────── v3.100.3+0 Installed YAML ──────────────────────── v0.4.14 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed IfElse ────────────────────── v0.1.1 Installed Isoband ───────────────────── v0.1.1 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed IntervalArithmetic ────────── v0.22.36 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.14.4+0 Installed FastaIO ───────────────────── v1.1.0 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.5.1 Installed FixedPointNumbers ─────────── v0.8.5 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Showoff ───────────────────── v1.0.3 Installed FFTW ──────────────────────── v1.10.0 Installed Rotations ─────────────────── v1.7.1 Installed LazyStack ─────────────────── v0.1.3 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.6+2 Installed Bessels ───────────────────── v0.2.8 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed Strided ───────────────────── v2.3.2 Installed MIToS ─────────────────────── v3.1.0 Installed Makie ─────────────────────── v0.22.10 Installed DelaunayTriangulation ─────── v1.6.4 Installing 71 artifacts Installed artifact Libffi 44.2 KiB Installed artifact EarCut 80.5 KiB Installed artifact Giflib 154.6 KiB Installed artifact Ogg 250.3 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact isoband 25.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact libwebp 2.6 MiB Installed artifact MbedTLS 2.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Libtiff 3.2 MiB Installed artifact LERC 272.9 KiB Installed artifact libdecor 44.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact libpng 328.4 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Pango 1.1 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact oneTBB 435.6 KiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Libuuid 3.6 MiB Installed artifact FFMPEG 11.0 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact libass 427.8 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact x264 2.1 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Dbus 489.8 KiB Installed artifact Imath 182.8 KiB Installed artifact FriBidi 78.9 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact XML2 2.5 MiB Installed artifact libinchi 933.4 KiB Installed artifact Xorg_libXfixes 195.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact LZO 208.9 KiB Installed artifact FreeType2 1.5 MiB Installed artifact LAME 292.5 KiB Installed artifact Wayland 390.6 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact libvorbis 271.0 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact Expat 274.7 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Cairo 2.2 MiB Installed artifact x265 1.4 MiB Installed artifact libsixel 177.3 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact XZ 1.5 MiB Installed artifact Opus 925.5 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact libaom 6.4 MiB Installed artifact Glib 7.7 MiB Installed artifact Libmount 6.5 MiB Updating `~/.julia/environments/v1.13/Project.toml` [7de43156] + BioMakie v0.4.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [0e736298] + Bessels v0.2.8 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7de43156] + BioMakie v0.4.4 [7e6ae17a] + BioSequences v3.5.0 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.26.0 [7a955b69] + CircularArrays v1.4.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [b46f11dc] + CoordRefSystems v0.18.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [927a84f5] + DelaunayTriangulation v1.6.4 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [a0c94c4b] + FastaIO v1.1.0 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [f7f18e0c] + GLFW v3.4.5 ⌅ [e9467ef8] + GLMakie v0.11.11 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [4e3cecfd] + ImageShow v0.3.8 [313cdc1a] + Indexing v1.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 ⌅ [d1acc4aa] + IntervalArithmetic v0.22.36 [8197267c] + IntervalSets v0.7.11 [524e6230] + IntervalTrees v1.1.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices 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libdecor_jll v0.2.2+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.2+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 41.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4811.0 ms ✓ MacroTools 756.9 ms ✓ Reexport 927.5 ms ✓ MappedArrays 923.5 ms ✓ TensorCore 1091.0 ms ✓ ConstructionBase 1963.8 ms ✓ IrrationalConstants 734.6 ms ✓ DataValueInterfaces 825.8 ms ✓ StatsAPI 2333.4 ms ✓ Format 1035.5 ms ✓ Observables 803.9 ms ✓ Twiddle 908.9 ms ✓ RoundingEmulator 806.0 ms ✓ PolygonOps 1177.5 ms ✓ IterTools 986.5 ms ✓ IntervalSets 857.1 ms ✓ CEnum 814.2 ms ✓ Indexing 2093.1 ms ✓ Combinatorics 1104.7 ms ✓ StringViews 977.5 ms ✓ Inflate 858.4 ms ✓ Contour 976.9 ms ✓ TupleTools 1242.7 ms ✓ TranscodingStreams 816.5 ms ✓ LaTeXStrings 1099.5 ms ✓ Statistics 895.5 ms ✓ StaticArraysCore 882.8 ms ✓ StableRNGs 2868.3 ms ✓ AdaptivePredicates 750.4 ms ✓ IfElse 912.8 ms ✓ AutoHashEquals 785.2 ms ✓ PtrArrays 774.5 ms ✓ SimpleBufferStream 1163.7 ms ✓ Grisu 841.7 ms ✓ DataAPI 759.6 ms ✓ RealDot 767.1 ms ✓ CommonWorldInvalidations 1111.1 ms ✓ URIs 830.8 ms ✓ InvertedIndices 963.5 ms ✓ LazyModules 883.5 ms ✓ InverseFunctions 820.4 ms ✓ BitFlags 1054.2 ms ✓ AbstractTrees 1189.2 ms ✓ AbstractFFTs 1033.1 ms ✓ EnumX 1978.4 ms ✓ FillArrays 1260.8 ms ✓ TriplotBase 917.3 ms ✓ IndirectArrays 2635.6 ms ✓ Bessels 1022.1 ms ✓ Extents 841.5 ms ✓ RangeArrays 1225.4 ms ✓ OrderedCollections 3926.6 ms ✓ ModernGL 875.0 ms ✓ HashArrayMappedTries 1119.3 ms ✓ DocStringExtensions 4648.8 ms ✓ BaseDirs 1175.5 ms ✓ IntervalTrees 1621.0 ms ✓ OffsetArrays 786.4 ms ✓ IteratorInterfaceExtensions 809.2 ms ✓ PackageExtensionCompat 997.7 ms ✓ DelimitedFiles 1041.5 ms ✓ NaNMath 1201.4 ms ✓ Requires 1709.5 ms ✓ ConcurrentUtilities 1190.8 ms ✓ SuiteSparse 1430.5 ms ✓ WoodburyMatrices 1089.5 ms ✓ GZip 906.8 ms ✓ Scratch 32204.9 ms ✓ Unitful 1527.8 ms ✓ StructTypes 1030.4 ms ✓ LoggingExtras 1734.2 ms ✓ ProgressMeter 1128.7 ms ✓ Compat 1069.3 ms ✓ Preferences 2873.9 ms ✓ UnicodeFun 1173.6 ms ✓ Hyperscript 1622.4 ms ✓ ExceptionUnwrapping 4182.9 ms ✓ PkgVersion 5004.2 ms ✓ Lazy 1726.0 ms ✓ CommonSubexpressions 4084.5 ms ✓ IRTools 3481.5 ms ✓ SimpleTraits 840.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 6228.7 ms ✓ DataValues 834.8 ms ✓ IntervalSets → IntervalSetsRandomExt 969.9 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1916.0 ms ✓ Dictionaries 891.4 ms ✓ BioGenerics 921.4 ms ✓ CodecZlib 814.4 ms ✓ SignedDistanceFields 1296.7 ms ✓ Statistics → SparseArraysExt 3992.3 ms ✓ FixedPointNumbers 1458.8 ms ✓ Distances 853.0 ms ✓ IntervalSets → IntervalSetsStatisticsExt 832.8 ms ✓ DiffResults 949.6 ms ✓ AliasTables 858.2 ms ✓ Showoff 994.4 ms ✓ Missings 1075.0 ms ✓ Quaternions 878.1 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1787.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 4041.4 ms ✓ OpenSSL 874.0 ms ✓ TransformsBase 3841.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1673.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1011.5 ms ✓ FillArrays → FillArraysStatisticsExt 857.3 ms ✓ ScopedValues 1398.6 ms ✓ LogExpFunctions 941.0 ms ✓ PaddedViews 839.5 ms ✓ CircularArrays 891.6 ms ✓ StackViews 737.0 ms ✓ TableTraits 943.0 ms ✓ StridedViews 865.3 ms ✓ Ratios 950.2 ms ✓ Adapt 9758.2 ms ✓ FileIO 1785.5 ms ✓ PDMats 1266.6 ms ✓ SparseInverseSubset 1369.9 ms ✓ AxisAlgorithms 1087.8 ms ✓ FastaIO 1086.2 ms ✓ RelocatableFolders 2628.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1994.7 ms ✓ Unitful → PrintfExt 1810.2 ms ✓ Unitful → InverseFunctionsUnitfulExt 841.4 ms ✓ Compat → CompatLinearAlgebraExt 968.4 ms ✓ PrecompileTools 1176.8 ms ✓ JLLWrappers 1576.4 ms ✓ AxisArrays 1337.1 ms ✓ SplitApplyCombine 2645.8 ms ✓ ColorTypes 1236.2 ms ✓ Distances → DistancesSparseArraysExt 804.4 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1019.7 ms ✓ MosaicViews 1745.6 ms ✓ Tables 1601.2 ms ✓ TableTraitsUtils 755.9 ms ✓ StridedViews → StridedViewsPtrArraysExt 1180.4 ms ✓ Strided 900.2 ms ✓ Ratios → RatiosFixedPointNumbersExt 1123.0 ms ✓ ArrayInterface 1253.9 ms ✓ Adapt → AdaptSparseArraysExt 1170.6 ms ✓ GPUArraysCore 845.0 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1463.6 ms ✓ FillArrays → FillArraysPDMatsExt 2656.9 ms ✓ ChainRulesCore 2006.0 ms ✓ FilePathsBase 3944.3 ms ✓ DataStructures 2513.7 ms ✓ BioSymbols 17833.3 ms ✓ SIMD 13094.7 ms ✓ StaticArrays 2930.0 ms ✓ RecipesBase 16625.8 ms ✓ Parsers 5292.4 ms ✓ Static 1368.9 ms ✓ Libffi_jll 1376.9 ms ✓ LZO_jll 1411.3 ms ✓ EarCut_jll 1367.2 ms ✓ Bzip2_jll 1507.3 ms ✓ OpenBLASConsistentFPCSR_jll 1404.7 ms ✓ isoband_jll 1361.2 ms ✓ libinchi_jll 1418.4 ms ✓ XZ_jll 1385.4 ms ✓ Rmath_jll 1342.3 ms ✓ OpenSpecFun_jll 1227.6 ms ✓ Xorg_xtrans_jll 1385.2 ms ✓ Opus_jll 4735.3 ms ✓ IntelOpenMP_jll 1398.0 ms ✓ x265_jll 1335.8 ms ✓ libpng_jll 1392.1 ms ✓ CRlibm_jll 1388.7 ms ✓ oneTBB_jll 1409.1 ms ✓ coordgenlibs_jll 1355.6 ms ✓ Imath_jll 1124.8 ms ✓ EpollShim_jll 1382.3 ms ✓ Libmount_jll 1407.1 ms ✓ libfdk_aac_jll 1399.2 ms ✓ Libuuid_jll 1393.3 ms ✓ FriBidi_jll 1343.1 ms ✓ LERC_jll 1383.3 ms ✓ Xorg_libXau_jll 1387.7 ms ✓ Ogg_jll 1354.6 ms ✓ FFTW_jll 1400.4 ms ✓ LAME_jll 1395.6 ms ✓ Graphite2_jll 1395.6 ms ✓ x264_jll 1378.9 ms ✓ LLVMOpenMP_jll 1425.4 ms ✓ Libiconv_jll 1400.8 ms ✓ MbedTLS_jll 1421.4 ms ✓ libaom_jll 1371.7 ms ✓ Xorg_libXdmcp_jll 1371.2 ms ✓ Giflib_jll 1416.4 ms ✓ Expat_jll 1421.5 ms ✓ JpegTurbo_jll 1320.2 ms ✓ ColorTypes → StyledStringsExt 7862.9 ms ✓ Colors 3722.6 ms ✓ ColorVectorSpace 1636.8 ms ✓ StructArrays 764.8 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1254.7 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 823.5 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1318.6 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1095.7 ms ✓ LazyStack 2359.2 ms ✓ ZygoteRules 908.1 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 882.4 ms ✓ Distances → DistancesChainRulesCoreExt 3062.2 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1360.9 ms ✓ TransmuteDims 838.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2922.1 ms ✓ FilePathsBase → FilePathsBaseTestExt 894.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1297.2 ms ✓ FilePaths 1687.1 ms ✓ SortingAlgorithms 2918.3 ms ✓ QuadGK 2952.9 ms ✓ NamedArrays 9269.5 ms ✓ BioSequences 20891.3 ms ✓ Automa 3880.7 ms ✓ ArnoldiMethod 1362.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1476.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1441.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5237.0 ms ✓ Rotations 1398.9 ms ✓ Adapt → AdaptStaticArraysExt 1350.0 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 14139.3 ms ✓ BioStructures 14494.0 ms ✓ JSON3 3853.1 ms ✓ JSON 8408.9 ms ✓ StaticArrayInterface 22522.5 ms ✓ GeometryBasics 1350.1 ms ✓ FreeType2_jll 888.9 ms ✓ Isoband 1468.6 ms ✓ Rmath 5430.3 ms ✓ SpecialFunctions 1503.8 ms ✓ CRlibm 11714.6 ms ✓ MKL_jll 1790.6 ms ✓ OpenEXR_jll 1550.9 ms ✓ libvorbis_jll 1472.6 ms ✓ Pixman_jll 1031.7 ms ✓ StringEncodings 1419.5 ms ✓ XML2_jll 1410.1 ms ✓ GettextRuntime_jll 2008.8 ms ✓ MbedTLS 1684.9 ms ✓ Xorg_libxcb_jll 2044.4 ms ✓ Dbus_jll 1878.9 ms ✓ Wayland_jll 1481.1 ms ✓ Libtiff_jll 1430.1 ms ✓ libsixel_jll 5894.9 ms ✓ QOI 50833.0 ms ✓ TiffImages 1323.3 ms ✓ Animations 1301.9 ms ✓ Graphics 30665.7 ms ✓ ImageCore 8797.6 ms ✓ ColorSchemes 1363.0 ms ✓ StructArrays → StructArraysSparseArraysExt 936.1 ms ✓ StructArrays → StructArraysLinearAlgebraExt 881.1 ms ✓ StructArrays → StructArraysAdaptExt 1579.9 ms ✓ StructArrays → StructArraysStaticArraysExt 5205.7 ms ✓ StatsBase 3546.2 ms ✓ PairwiseListMatrices 3397.4 ms ✓ BioAlignments 22128.6 ms ✓ FASTX 4140.8 ms ✓ NearestNeighbors 9468.5 ms ✓ Graphs 1885.4 ms ✓ Rotations → RotationsRecipesBaseExt 4527.8 ms ✓ Interpolations 18611.9 ms ✓ TensorCast 1604.5 ms ✓ BioStructures → BioStructuresBioSequencesExt 3378.9 ms ✓ ColorBrewer 1021.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1507.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 3291.9 ms ✓ Packing 13965.5 ms ✓ GridLayoutBase 10581.0 ms ✓ MakieCore 11588.4 ms ✓ MeshIO 6089.5 ms ✓ ShaderAbstractions 1750.1 ms ✓ FreeType 1487.1 ms ✓ Fontconfig_jll 3919.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2394.0 ms ✓ HypergeometricFunctions 1276.5 ms ✓ DiffRules 1358.2 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5221.0 ms ✓ IntervalArithmetic 6473.9 ms ✓ FFTW 5785.1 ms ✓ OpenEXR 2504.2 ms ✓ YAML 1047.1 ms ✓ LightXML 1533.5 ms ✓ Glib_jll 24764.2 ms ✓ HTTP 1496.5 ms ✓ Xorg_libX11_jll 4485.3 ms ✓ ImageBase 7024.1 ms ✓ PNGFiles 10703.4 ms ✓ Sixel 9456.9 ms ✓ JpegTurbo 2598.0 ms ✓ Colorfy 16618.1 ms ✓ PlotUtils 12399.8 ms ✓ ChainRules 2023.5 ms ✓ FASTX → BioSequencesExt 3758.8 ms ✓ Interpolations → InterpolationsUnitfulExt 1850.8 ms ✓ BioStructures → BioStructuresBioAlignmentsExt 1222.6 ms ✓ TiledIteration 8753.3 ms ✓ FreeTypeAbstraction 2831.8 ms ✓ StatsFuns 6655.5 ms ✓ ForwardDiff 1528.8 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1423.9 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1384.9 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1127.6 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 1052.9 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt ✗ MIToS 6226.6 ms ✓ FileIO → HTTPExt 1365.4 ms ✓ Xorg_libXfixes_jll 1400.8 ms ✓ Xorg_libXrender_jll 1379.9 ms ✓ Xorg_libXext_jll 1368.8 ms ✓ Xorg_libxkbfile_jll 5895.1 ms ✓ ImageAxes 8291.1 ms ✓ ImageShow 3032.7 ms ✓ Colorfy → ColorfyUnitfulExt 1596.8 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 28893.6 ms ✓ MathTeXEngine 3519.5 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1071.5 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9970.1 ms ✓ Distributions 1743.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2264.0 ms ✓ Unitful → ForwardDiffExt 1232.5 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt 58528.6 ms ✓ Zygote 6881.9 ms ✓ ExactPredicates 1392.0 ms ✓ Xorg_libXcursor_jll 1381.0 ms ✓ Xorg_libXrandr_jll 1352.1 ms ✓ Xorg_libXinerama_jll 1400.7 ms ✓ Xorg_libXi_jll 1497.8 ms ✓ Cairo_jll 1461.8 ms ✓ Libglvnd_jll 1419.0 ms ✓ Xorg_xkbcomp_jll 4259.0 ms ✓ ImageMetadata 3385.0 ms ✓ Distributions → DistributionsTestExt 3611.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 3616.8 ms ✓ Colorfy → ColorfyDistributionsExt 7237.3 ms ✓ Zygote → ZygoteDistancesExt 5792.3 ms ✓ Zygote → ZygoteColorsExt 12835.3 ms ✓ CoordRefSystems 9854.9 ms ✓ DelaunayTriangulation 1790.5 ms ✓ HarfBuzz_jll 1678.7 ms ✓ libwebp_jll 1389.7 ms ✓ Xorg_xkeyboard_config_jll 8544.2 ms ✓ Netpbm 4665.1 ms ✓ KernelDensity 14651.6 ms ✓ Meshes 1647.6 ms ✓ libass_jll 1490.7 ms ✓ Pango_jll 9118.0 ms ✓ WebP 1392.1 ms ✓ xkbcommon_jll 1592.0 ms ✓ FFMPEG_jll 2657.4 ms ✓ Cairo 5489.8 ms ✓ ImageIO 1619.6 ms ✓ libdecor_jll 24349.8 ms ✓ MolecularGraph 280788.4 ms ✓ Makie 1588.3 ms ✓ GLFW_jll 69523.9 ms ✓ Meshes → MeshesMakieExt 2407.6 ms ✓ GLFW ✗ GLMakie ✗ BioMakie 356 dependencies successfully precompiled in 1699 seconds. 40 already precompiled. 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP └ ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57814`: IOError: connect: connection refused (ECONNREFUSED) │ │ Stacktrace: │ │ [1] getconnection(::Type{Sockets.TCPSocket}, host::SubString{String}, port::SubString{String}; keepalive::Bool, readtimeout::Int64, kw::@Kwargs{require_ssl_verification::Bool, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:531 │ │ [2] getconnection │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:508 [inlined] │ │ [3] getconnection(::Type{OpenSSL.SSLStream}, host::SubString{String}, port::SubString{String}; kw::@Kwargs{require_ssl_verification::Bool, keepalive::Bool, readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:585 │ │ [4] getconnection │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:578 [inlined] │ │ [5] #13 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/Connections.jl:467 [inlined] │ │ [6] macro expansion │ │ @ ~/.julia/packages/ConcurrentUtilities/ofY4K/src/try_with_timeout.jl:92 [inlined] │ │ [7] (::ConcurrentUtilities.var"#try_with_timeout##2#try_with_timeout##3"{Any, Channel{Any}, HTTP.Connections.var"#13#14"{OpenSSL.SSLStream, Bool, Bool, @Kwargs{readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}, SubString{String}, SubString{String}}, Timer})() │ │ @ ConcurrentUtilities ~/.julia/packages/ConcurrentUtilities/ofY4K/src/ConcurrentUtilities.jl:10 │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:321 │ │ [4] kwcall(::@NamedTuple{iofunction::Nothing, decompress::Nothing, verbose::Int64}, ::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}, args::HTTP.Messages.Request) │ │ @ Base ./error.jl:304 │ │ [5] (::HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:75 │ │ [6] manageretries │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [7] (::HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:42 │ │ [8] managecookies │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [9] (::HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:71 │ │ [10] defaultheaders │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [11] (::HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:25 │ │ [12] redirects │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [13] (::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:35 │ │ [14] makerequest │ │ @ ~/.julia/packages/HTTP/JcAHX/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [15] request(stack::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:457 │ │ [16] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:455 │ │ [17] #request#21 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:315 [inlined] │ │ ┌[18] request │ │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:313 [inlined] │ │ ╰──── repeated 2 times │ │ [20] get │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:518 [inlined] │ │ [21] #51 │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:36 [inlined] │ │ [22] withenv(::HTTP.var"#51#52"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:35 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] │ │ [25] macro expansion │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:34 [inlined] │ │ [26] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] │ │ [27] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/precompile.jl:4 │ │ [28] include(mapexpr::Function, mod::Module, _path::String) │ │ @ Base ./Base.jl:310 │ │ [29] top-level scope │ │ @ ~/.julia/packages/HTTP/JcAHX/src/HTTP.jl:643 │ │ [30] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:309 │ │ [31] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:3069 │ │ [32] top-level scope │ │ @ stdin:5 │ │ [33] eval(m::Module, e::Any) │ │ @ Core ./boot.jl:489 │ │ [34] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2915 │ │ [35] include_string │ │ @ ./loading.jl:2925 [inlined] │ │ [36] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:328 │ │ [37] _start() │ └ @ Base ./client.jl:563 └ ERROR: LoadError: The following 1 direct dependency failed to precompile: BioMakie Failed to precompile BioMakie [7de43156-b762-4475-b39f-ba1e1e59ee2f] to "/home/pkgeval/.julia/compiled/v1.13/BioMakie/jl_8gPami" (ProcessExited(1)). ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] NamedArray @ ~/.julia/packages/NamedArrays/3lDuX/src/namedarraytypes.jl:71 [inlined] [3] NamedArray @ ~/.julia/packages/NamedArrays/3lDuX/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:235 [6] ContingencyTable @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base ./Base.jl:309 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [15] top-level scope @ stdin:5 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [18] include_string @ ./loading.jl:2925 [inlined] [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [20] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/MIToS.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.13/MIToS/jl_uUYpIo" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:29 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1694.08s ################################################################################ # Loading # Loading BioMakie... Precompiling packages... ✗ MIToS ✗ GLMakie Info Given BioMakie was explicitly requested, output will be shown live  ERROR: LoadError: Inconsistent dictionary sizes Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] NamedArray  @ ~/.julia/packages/NamedArrays/3lDuX/src/namedarraytypes.jl:71 [inlined]  [3] NamedArray  @ ~/.julia/packages/NamedArrays/3lDuX/src/constructors.jl:43 [inlined]  [4] macro expansion  @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:249 [inlined]  [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:235  [6] ContingencyTable  @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:260 [inlined]  [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:266  [8] top-level scope  @ ~/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [10] top-level scope  @ ~/.julia/packages/MIToS/aToo3/src/Information/Information.jl:113  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [12] top-level scope  @ ~/.julia/packages/MIToS/aToo3/src/MIToS.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3069  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2915  [18] include_string  @ ./loading.jl:2925 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [20] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/MIToS.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.13/MIToS/jl_HnVQxF" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3356  [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)  @ Base ./loading.jl:3234  [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2698  [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94  [6] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined]  [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115  [8] #invokelatest_gr#234  @ ./reflection.jl:1335 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1327 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3927  [11] maybe_cachefile_lock  @ ./loading.jl:3924 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2684  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2512  [14] macro expansion  @ ./loading.jl:2440 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2404  [17] require  @ ./loading.jl:2380 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:29  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3069  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2915  [27] include_string  @ ./loading.jl:2925 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:328  [29] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:1 in expression starting at stdin:5 ✗ BioMakie 0 dependencies successfully precompiled in 110 seconds. 396 already precompiled. ERROR: The following 1 direct dependency failed to precompile: BioMakie Failed to precompile BioMakie [7de43156-b762-4475-b39f-ba1e1e59ee2f] to "/home/pkgeval/.julia/compiled/v1.13/BioMakie/jl_hBRfpM" (ProcessExited(1)). ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] NamedArray @ ~/.julia/packages/NamedArrays/3lDuX/src/namedarraytypes.jl:71 [inlined] [3] NamedArray @ ~/.julia/packages/NamedArrays/3lDuX/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:235 [6] ContingencyTable @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base ./Base.jl:309 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3069 [15] top-level scope @ stdin:5 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [18] include_string @ ./loading.jl:2925 [inlined] [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [20] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/MIToS.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.13/MIToS/jl_HnVQxF" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3356 [3] kwcall(::@NamedTuple{reasons::Dict{String, Int64}, loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3234 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3927 [11] maybe_cachefile_lock @ ./loading.jl:3924 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2684 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2512 [14] macro expansion @ ./loading.jl:2440 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2404 [17] require @ ./loading.jl:2380 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:29 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3069 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2915 [27] include_string @ ./loading.jl:2925 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [29] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/src/BioMakie.jl:1 in expression starting at stdin: Loading failed after 112.54s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using BioMakie'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:330 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1911.93s: networking-related issues were detected