Package evaluation to test sparseQFCA on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T08:53:37.672 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.96s ################################################################################ # Installation # Installing sparseQFCA... Resolving package versions... Installed IrrationalConstants ─── v0.2.6 Installed MPICH_jll ───────────── v4.3.2+0 Installed ColorTypes ──────────── v0.12.1 Installed libaec_jll ──────────── v1.1.5+0 Installed DiffRules ───────────── v1.15.1 Installed AbstractFBCModels ───── v1.3.0 Installed SBML ────────────────── v1.6.0 Installed MutableArithmetics ──── v1.6.7 Installed oneTBB_jll ──────────── v2022.0.0+1 Installed StableRNGs ──────────── v1.0.4 Installed JLD2 ────────────────── v0.5.15 Installed XML2_jll ────────────── v2.13.9+0 Installed ECOS_jll ────────────── v200.0.800+0 Installed JSON ────────────────── v0.21.4 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed HSL ─────────────────── v0.4.3 Installed JSON3 ───────────────── v1.14.3 Installed SCS ─────────────────── v2.6.0 Installed CDDLib ──────────────── v0.10.2 Installed SBMLFBCModels ───────── v1.1.1 Installed GLPK_jll ────────────── v5.0.1+1 Installed Preferences ─────────── v1.5.1 Installed Hwloc_jll ───────────── v2.12.2+0 Installed DiffResults ─────────── v1.1.0 Installed BenchmarkTools ──────── v1.6.3 Installed Clp_jll ─────────────── v100.1700.1000+1 Installed MUMPS_seq_jll ───────── v500.800.100+0 Installed Bzip2_jll ───────────── v1.0.9+0 Installed SpecialFunctions ────── v2.6.1 Installed QDLDL ───────────────── v0.4.1 Installed Cbc ─────────────────── v1.3.0 Installed Parsers ─────────────── v2.8.3 Installed CodecBzip2 ──────────── v0.8.5 Installed IfElse ──────────────── v0.1.1 Installed HashArrayMappedTries ── v0.2.0 Installed Pardiso ─────────────── v0.5.7 Installed Unitful ─────────────── v1.27.0 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Clp ─────────────────── v1.3.0 Installed FixedPointNumbers ───── v0.8.5 Installed LLVMOpenMP_jll ──────── v18.1.8+0 Installed Clarabel ────────────── v0.10.0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed MKL_jll ─────────────── v2024.2.0+0 Installed Cbc_jll ─────────────── v200.1000.1200+0 Installed NaNMath ─────────────── v1.1.3 Installed JLLWrappers ─────────── v1.7.1 Installed PikaParser ──────────── v0.6.1 Installed StaticArrays ────────── v1.9.16 Installed TimerOutputs ────────── v0.5.29 Installed StaticArraysCore ────── v1.4.4 Installed JuMP ────────────────── v1.29.4 Installed Libiconv_jll ────────── v1.18.0+0 Installed ConstructionBase ────── v1.6.0 Installed OrderedCollections ──── v1.8.1 Installed PrecompileTools ─────── v1.3.3 Installed Cgl_jll ─────────────── v0.6000.900+0 Installed ScopedValues ────────── v1.5.0 Installed cddlib_jll ──────────── v0.94.14+0 Installed TranscodingStreams ──── v0.11.3 Installed JSONFBCModels ───────── v1.0.1 Installed SnoopPrecompile ─────── v1.0.3 Installed SBML_jll ────────────── v5.21.0+0 Installed CEnum ───────────────── v0.5.0 Installed FileIO ──────────────── v1.17.1 Installed DelimitedFiles ──────── v1.9.1 Installed MathOptIIS ──────────── v0.1.1 Installed MPIPreferences ──────── v0.1.11 Installed ECOS ────────────────── v1.1.3 Installed AMD ─────────────────── v0.5.3 Installed COBREXA ─────────────── v2.9.1 Installed OpenBLAS32_jll ──────── v0.3.30+0 Installed ForwardDiff ─────────── v1.3.1 Installed Reexport ────────────── v1.2.2 Installed MPItrampoline_jll ───── v5.5.4+0 Installed Statistics ──────────── v1.11.1 Installed Osi_jll ─────────────── v0.10800.1100+0 Installed LogExpFunctions ─────── v0.3.29 Installed DataStructures ──────── v0.18.22 Installed ConstraintTrees ─────── v1.11.0 Installed HDF5 ────────────────── v0.17.2 Installed Colors ──────────────── v0.13.1 Installed Requires ────────────── v1.3.1 Installed Polyhedra ───────────── v0.8.1 Installed IntelOpenMP_jll ─────── v2024.2.1+0 Installed CommonSubexpressions ── v0.3.1 Installed GenericLinearAlgebra ── v0.3.19 Installed HiGHS_jll ───────────── v1.12.0+0 Installed MacroTools ──────────── v0.5.16 Installed Compat ──────────────── v4.18.1 Installed ExprTools ───────────── v0.1.10 Installed CoinUtils_jll ───────── v200.1100.1200+0 Installed SCS_jll ─────────────── v300.200.1100+0 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed ASL_jll ─────────────── v0.1.3+0 Installed CodecZlib ───────────── v0.7.8 Installed HiGHS ───────────────── v1.20.1 Installed METIS_jll ───────────── v5.1.2+1 Installed HSL_jll ─────────────── v4.0.4+0 Installed HDF5_jll ────────────── v1.14.6+0 Installed StructTypes ─────────── v1.11.0 Installed DocStringExtensions ─── v0.9.5 Installed GLPK ────────────────── v1.2.1 Installed MathOptInterface ────── v1.48.0 Installed sparseQFCA ──────────── v2.3.0 Installing 26 artifacts Installed artifact libaec 49.6 KiB Installed artifact ECOS 75.2 KiB Installed artifact HSL 1.1 MiB Installed artifact Cbc 1.1 MiB Installed artifact CoinUtils 811.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Clp 1.4 MiB Installed artifact cddlib 1.0 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Osi 443.6 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact MPICH 3.3 MiB Installed artifact Cgl 656.0 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact ASL 276.3 KiB Installed artifact XML2 2.5 MiB Installed artifact HiGHS 2.3 MiB Installed artifact SCS 543.6 KiB Installed artifact METIS 1.1 MiB Installed artifact GLPK 3.1 MiB Installed artifact SBML 6.0 MiB Installed artifact HDF5 5.7 MiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact OpenBLAS32 10.0 MiB Updating `~/.julia/environments/v1.12/Project.toml` [077cf62c] + sparseQFCA v2.3.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [14f7f29c] + AMD v0.5.3 [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [3391f64e] + CDDLib v0.10.2 [fa961155] + CEnum v0.5.0 [babc4406] + COBREXA v2.9.1 [9961bab8] + Cbc v1.3.0 ⌅ [61c947e1] + Clarabel v0.10.0 [e2554f3b] + Clp v1.3.0 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [e2685f51] + ECOS v1.1.3 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [60bf3e95] + GLPK v1.2.1 [14197337] + GenericLinearAlgebra v0.3.19 [f67ccb44] + HDF5 v0.17.2 ⌅ [34c5aeac] + HSL v0.4.3 [076d061b] + HashArrayMappedTries v0.2.0 [87dc4568] + HiGHS v1.20.1 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [475c1105] + JSONFBCModels v1.0.1 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.48.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌅ [46dd5b70] + Pardiso v0.5.7 [69de0a69] + Parsers v2.8.3 [3bbf5609] + PikaParser v0.6.1 [67491407] + Polyhedra v0.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [bfc457fd] + QDLDL v0.4.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [c946c3f1] + SCS v2.6.0 [7e506255] + ScopedValues v1.5.0 [66db9d55] + SnoopPrecompile v1.0.3 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [077cf62c] + sparseQFCA v2.3.0 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [38041ee0] + Cbc_jll v200.1000.1200+0 [3830e938] + Cgl_jll v0.6000.900+0 [06985876] + Clp_jll v100.1700.1000+1 [be027038] + CoinUtils_jll v200.1100.1200+0 [c2c64177] + ECOS_jll v200.0.800+0 [e8aa6df9] + GLPK_jll v5.0.1+1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [017b0a0e] + HSL_jll v4.0.4+0 [8fd58aa0] + HiGHS_jll v1.12.0+0 [e33a78d0] + Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] + IntelOpenMP_jll v2024.2.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [d00139f3] + METIS_jll v5.1.2+1 ⌅ [856f044c] + MKL_jll v2024.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [7da25872] + Osi_jll v0.10800.1100+0 [bb12108a] + SBML_jll v5.21.0+0 [f4f2fc5b] + SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] + cddlib_jll v0.94.14+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Pardiso → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/4b618484bf94a52f02595cd73ac8a6417f4c0c70/build.log` Installation completed after 24.14s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4239.1 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 892.4 ms ✓ ExprTools 3238.8 ms ✓ CEnum 1017.8 ms ✓ Statistics 6326.0 ms ✓ MacroTools 3890.9 ms ✓ OrderedCollections 1155.4 ms ✓ Requires 916.7 ms ✓ StableRNGs 755.2 ms ✓ Reexport 1101.0 ms ✓ DocStringExtensions 5032.2 ms ✓ IrrationalConstants 1262.3 ms ✓ TranscodingStreams 912.4 ms ✓ HashArrayMappedTries 3682.4 ms ✓ NaNMath 944.3 ms ✓ DelimitedFiles 765.2 ms ✓ IfElse 4374.4 ms ✓ ConstructionBase 974.9 ms ✓ StaticArraysCore 1652.8 ms ✓ GenericLinearAlgebra 1759.4 ms ✓ AMD 5628.2 ms ✓ StructTypes 41564.7 ms ✓ Unitful 1145.2 ms ✓ Preferences 3920.5 ms ✓ Compat 10945.8 ms ✓ MutableArithmetics 6356.3 ms ✓ TimerOutputs 6655.3 ms ✓ FixedPointNumbers 1300.0 ms ✓ Statistics → SparseArraysExt 1627.4 ms ✓ CommonSubexpressions 9317.7 ms ✓ FileIO 1460.0 ms ✓ PikaParser 3406.5 ms ✓ AbstractFBCModels 1328.1 ms ✓ LogExpFunctions 938.5 ms ✓ CodecZlib 896.2 ms ✓ ScopedValues 831.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 876.5 ms ✓ DiffResults 1343.9 ms ✓ QDLDL 1773.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1793.8 ms ✓ Unitful → NaNMathExt 2036.2 ms ✓ Unitful → PrintfExt 1103.1 ms ✓ SnoopPrecompile 1193.8 ms ✓ JLLWrappers 1507.4 ms ✓ MPIPreferences 880.6 ms ✓ PrecompileTools 877.8 ms ✓ Compat → CompatLinearAlgebraExt 5167.6 ms ✓ ColorTypes 1409.9 ms ✓ LLVMOpenMP_jll 1368.2 ms ✓ Bzip2_jll 1312.8 ms ✓ Xorg_libpciaccess_jll 1424.5 ms ✓ libaec_jll 1404.9 ms ✓ METIS_jll 1455.9 ms ✓ ASL_jll 4772.9 ms ✓ IntelOpenMP_jll 4492.2 ms ✓ oneTBB_jll 1187.8 ms ✓ MicrosoftMPI_jll 1601.5 ms ✓ CoinUtils_jll 1310.5 ms ✓ ECOS_jll 1326.2 ms ✓ Libiconv_jll 1461.2 ms ✓ HSL_jll 1480.4 ms ✓ OpenSpecFun_jll 1356.2 ms ✓ OpenBLAS32_jll 1387.4 ms ✓ cddlib_jll 1436.0 ms ✓ GLPK_jll 4545.4 ms ✓ MPItrampoline_jll 18329.0 ms ✓ StaticArrays 21701.2 ms ✓ Parsers 52917.0 ms ✓ JLD2 3913.6 ms ✓ DataStructures 1258.9 ms ✓ ColorTypes → StyledStringsExt 10259.1 ms ✓ Colors 1587.6 ms ✓ SCS_jll 972.2 ms ✓ CodecBzip2 1457.2 ms ✓ MUMPS_seq_jll 7974.7 ms ✓ MKL_jll 1400.4 ms ✓ Osi_jll 1370.7 ms ✓ XML2_jll 5246.5 ms ✓ SpecialFunctions 1414.7 ms ✓ HiGHS_jll 9468.7 ms ✓ HSL 1306.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1362.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 17920.5 ms ✓ JSON3 3961.7 ms ✓ JSON 3708.0 ms ✓ ConstraintTrees 18171.9 ms ✓ Pardiso 1622.0 ms ✓ Clp_jll 1448.8 ms ✓ Hwloc_jll 1504.4 ms ✓ SBML_jll 2324.7 ms ✓ DiffRules 3090.0 ms ✓ BenchmarkTools 7775.8 ms ✓ JSONFBCModels 1451.3 ms ✓ Cgl_jll 4413.5 ms ✓ OpenMPI_jll 4645.5 ms ✓ MPICH_jll 18775.1 ms ✓ SBML 9662.5 ms ✓ ForwardDiff 1493.9 ms ✓ Cbc_jll 5130.9 ms ✓ HDF5_jll 4486.7 ms ✓ SBMLFBCModels 1705.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2216.3 ms ✓ Unitful → ForwardDiffExt 87659.2 ms ✓ MathOptInterface 18009.1 ms ✓ HDF5 59138.4 ms ✓ SCS 6178.8 ms ✓ MathOptIIS 52852.3 ms ✓ JuMP 14867.5 ms ✓ Polyhedra 9290.2 ms ✓ ECOS 9698.3 ms ✓ GLPK 147749.3 ms ✓ Clarabel 34556.6 ms ✓ Clp 8594.2 ms ✓ Cbc 35583.7 ms ✓ HiGHS 16834.5 ms ✓ COBREXA 8742.7 ms ✓ Polyhedra → PolyhedraJuMPExt 8149.8 ms ✓ CDDLib 46156.4 ms ✓ sparseQFCA 117 dependencies successfully precompiled in 1013 seconds. 39 already precompiled. 2 dependencies had output during precompilation: ┌ Pardiso │ Downloading artifact: MKL └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1030.92s ################################################################################ # Testing # Testing sparseQFCA Status `/tmp/jl_gesnC0/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [3391f64e] CDDLib v0.10.2 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [e2685f51] ECOS v1.1.3 [60bf3e95] GLPK v1.2.1 [f67ccb44] HDF5 v0.17.2 [87dc4568] HiGHS v1.20.1 ⌅ [033835bb] JLD2 v0.5.15 ⌅ [682c06a0] JSON v0.21.4 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [b8f27783] MathOptInterface v1.48.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [077cf62c] sparseQFCA v2.3.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [1a1011a3] SharedArrays v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gesnC0/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [3391f64e] CDDLib v0.10.2 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [9961bab8] Cbc v1.3.0 ⌅ [61c947e1] Clarabel v0.10.0 [e2554f3b] Clp v1.3.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2685f51] ECOS v1.1.3 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.1 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.1 [60bf3e95] GLPK v1.2.1 [14197337] GenericLinearAlgebra v0.3.19 [f67ccb44] HDF5 v0.17.2 ⌅ [34c5aeac] HSL v0.4.3 [076d061b] HashArrayMappedTries v0.2.0 [87dc4568] HiGHS v1.20.1 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.48.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌅ [46dd5b70] Pardiso v0.5.7 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [67491407] Polyhedra v0.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [bfc457fd] QDLDL v0.4.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [c946c3f1] SCS v2.6.0 [7e506255] ScopedValues v1.5.0 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [077cf62c] sparseQFCA v2.3.0 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [38041ee0] Cbc_jll v200.1000.1200+0 [3830e938] Cgl_jll v0.6000.900+0 [06985876] Clp_jll v100.1700.1000+1 [be027038] CoinUtils_jll v200.1100.1200+0 [c2c64177] ECOS_jll v200.0.800+0 [e8aa6df9] GLPK_jll v5.0.1+1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [017b0a0e] HSL_jll v4.0.4+0 [8fd58aa0] HiGHS_jll v1.12.0+0 [e33a78d0] Hwloc_jll v2.12.2+0 ⌅ [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [d00139f3] METIS_jll v5.1.2+1 ⌅ [856f044c] MKL_jll v2024.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 ⌅ [d7ed1dd3] MUMPS_seq_jll v500.800.100+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [7da25872] Osi_jll v0.10800.1100+0 [bb12108a] SBML_jll v5.21.0+0 [f4f2fc5b] SCS_jll v300.200.1100+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f07e07eb] cddlib_jll v0.94.14+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... #-------------------------------------------------------------------------------------------# Number of Proccess : 8 Number of Workers : 7 #-------------------------------------------------------------------------------------------# sparseQFCA : iIS312 : Metabolic Network: Number of Metabolites : 606 Number of Reactions : 519 Number of Genes : 312 Stoichiometric matrix : 606 x 519 Homogenization: M = 1.0e6 Reversibility Checking: Number of irreversible reactions : 218 Number of reversible reactions : 301 Consistency_Checking(SwiftCC): Number of Proccess : 8 Number of Workers : 7 Solver = HiGHS Tolerance = 1.0e-9 Number of irreversible blocked reactions : 154 Number of reversible blocked reactions : 133 Number of blocked reactions : 287 From worker 6: terminate called after throwing an instance of 'std::system_error' From worker 6: what(): Resource temporarily unavailable From worker 6: From worker 6: [832] signal 6 (-6): Aborted From worker 6: in expression starting at none:0 From worker 6: unknown function (ip: 0x76481870febc) at /lib/x86_64-linux-gnu/libc.so.6 From worker 6: gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 6: abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) From worker 6: __verbose_terminate_handler at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/vterminate.cc:95 From worker 6: __terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:48 From worker 6: terminate at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_terminate.cc:58 From worker 6: __cxa_throw at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/libsupc++/eh_throw.cc:98 From worker 6: __throw_system_error at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/system_error.cc:595 From worker 6: _M_start_thread at /workspace/srcdir/gcc-14.2.0/libstdc++-v3/src/c++11/thread.cc:176 From worker 6: _ZN17HighsTaskExecutor10initializeEi.part.666 at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) From worker 6: Highs_run at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/gen/libhighs.jl:328 [inlined] From worker 6: #46 at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 [inlined] From worker 6: disable_sigint at ./c.jl:167 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Bridges/bridge_optimizer.jl:367 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/MathOptInterface.jl:122 [inlined] From worker 6: optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Utilities/cachingoptimizer.jl:370 From worker 6: unknown function (ip: 0x7647e53b99c2) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:609 From worker 6: optimize! at /home/pkgeval/.julia/packages/JuMP/7eD71/src/optimizer_interface.jl:560 From worker 6: unknown function (ip: 0x7647e5390be2) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: macro expansion at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:676 [inlined] From worker 6: #distributedReversibility_Correction##2 at /source/usr/share/julia/stdlib/v1.12/Distributed/src/macros.jl:306 From worker 6: #pfor##2 at /source/usr/share/julia/stdlib/v1.12/Distributed/src/macros.jl:86 From worker 6: unknown function (ip: 0x7647e5348897) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: jl_apply at /source/src/julia.h:2391 [inlined] From worker 6: jl_f_invokelatest at /source/src/builtins.c:881 From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: jl_apply at /source/src/julia.h:2391 [inlined] From worker 6: jl_f__apply_iterate at /source/src/builtins.c:868 From worker 6: #handle_msg##0 at /source/usr/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:283 From worker 6: run_work_thunk at /source/usr/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:70 From worker 6: unknown function (ip: 0x7647e531635b) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: run_work_thunk at /source/usr/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:79 From worker 6: #schedule_call##2 at /source/usr/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:88 From worker 6: unknown function (ip: 0x7647e5315c0f) at (unknown file) From worker 6: _jl_invoke at /source/src/gf.c:4010 [inlined] From worker 6: ijl_apply_generic at /source/src/gf.c:4210 From worker 6: jl_apply at /source/src/julia.h:2391 [inlined] From worker 6: start_task at /source/src/task.c:1252 From worker 6: Allocations: 27809007 (Pool: 27808505; Big: 502); GC: 12 Worker 6 terminated. UNHANDLED TASK ERROR: EOFError: read end of file Stacktrace: [1] (::Base.var"#wait_locked#unsafe_read##0")(s::Sockets.TCPSocket, buf::IOBuffer, nb::Int64) @ Base ./stream.jl:980 [2] unsafe_read(s::Sockets.TCPSocket, p::Ptr{UInt8}, nb::UInt64) @ Base ./stream.jl:988 [3] unsafe_read @ ./io.jl:890 [inlined] [4] unsafe_read(s::Sockets.TCPSocket, p::Base.RefValue{NTuple{4, Int64}}, n::Int64) @ Base ./io.jl:889 [5] read! @ ./io.jl:894 [inlined] [6] deserialize_hdr_raw @ /opt/julia/share/julia/stdlib/v1.12/Distributed/src/messages.jl:167 [inlined] [7] message_handler_loop(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:172 [8] process_tcp_streams(r_stream::Sockets.TCPSocket, w_stream::Sockets.TCPSocket, incoming::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:133 [9] (::Distributed.var"#process_messages##0#process_messages##1"{Sockets.TCPSocket, Sockets.TCPSocket, Bool})() @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/process_messages.jl:121 UNHANDLED TASK ERROR: ProcessExitedException(6) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/macros.jl:281 ERROR: LoadError: TaskFailedException nested task error: ProcessExitedException(6) Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] (::Distributed.var"#pfor##0#pfor##1"{Main.sparseQFCA.Pre_processing.var"#distributedReversibility_Correction##2#distributedReversibility_Correction##3"{Vector{Int64}, Vector{VariableRef}, SharedMatrix{Int64}, Float64}, Vector{Int64}})() @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/macros.jl:281 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:630 [2] macro expansion @ ./task.jl:663 [inlined] [3] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}, SolverName::String, OctuplePrecision::Bool, printLevel::Int64) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:663 [4] distributedReversibility_Correction(ModelObject_Correction::Main.sparseQFCA.Pre_processing.Model_Correction, blocked_index_rev::Vector{Int64}) @ Main.sparseQFCA.Pre_processing ~/.julia/packages/sparseQFCA/VIdqW/src/Pre_Processing/Pre_processing.jl:594 [5] top-level scope @ ~/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [7] top-level scope @ none:6 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [10] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/sparseQFCA/VIdqW/test/runtests.jl:56 ┌ Warning: Forcibly interrupting busy workers │ exception = rmprocs: pids [2, 3, 4, 5, 7, 8] not terminated after 5.0 seconds. └ @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/cluster.jl:1269 ┌ Warning: rmprocs: process 1 not removed └ @ Distributed /opt/julia/share/julia/stdlib/v1.12/Distributed/src/cluster.jl:1065 Testing failed after 1184.44s ERROR: LoadError: Package sparseQFCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 2278.01s: package tests unexpectedly errored