Package evaluation to test TopoChains on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T17:24:50.024


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.12`

Set-up completed after 8.3s


################################################################################
# Installation
#

Installing TopoChains...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [61cb6e9c] + TopoChains v0.1.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
⌅ [d9f16b24] + Functors v0.2.8
  [1914dd2f] + MacroTools v0.5.16
  [61cb6e9c] + TopoChains v0.1.1
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.78s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling packages...
   3838.0 ms  ✓ NaNMath
   6047.6 ms  ✓ FixedPointNumbers
   1117.3 ms  ✓ Functors
   1051.0 ms  ✓ GZip
   1062.1 ms  ✓ Requires
    751.6 ms  ✓ Adapt
   1294.7 ms  ✓ DiffRules
   1212.9 ms  ✓ ZipFile
   6785.9 ms  ✓ SpecialFunctions
   1476.5 ms  ✓ Juno
  12808.5 ms  ✓ ColorTypes
   4222.0 ms  ✓ TopoChains
   2172.6 ms  ✓ NNlib
  19796.1 ms  ✓ ForwardDiff
   5771.8 ms  ✓ Colors
              ✗ Flux
  15 dependencies successfully precompiled in 79 seconds. 59 already precompiled.
  1 dependency had output during precompilation:
┌ Requires
│  ┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│  └ @ Base deprecated.jl:389
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

Flux 

Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.12/Flux/jl_NVER5h".
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:47
  [2] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [4] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [6] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [12] include_string
    @ ./loading.jl:2880 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [14] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:34

Precompilation failed after 99.13s



################################################################################
# Testing
#

     Testing TopoChains
      Status `/tmp/jl_y50NYQ/Project.toml`
⌃ [587475ba] Flux v0.6.6
⌅ [d9f16b24] Functors v0.2.8
  [1914dd2f] MacroTools v0.5.16
  [61cb6e9c] TopoChains v0.1.1
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_y50NYQ/Manifest.toml`
⌅ [1520ce14] AbstractTrees v0.2.1
⌅ [79e6a3ab] Adapt v0.3.1
⌅ [3da002f7] ColorTypes v0.8.1
⌅ [5ae59095] Colors v0.9.6
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [163ba53b] DiffResults v1.1.0
⌅ [b552c78f] DiffRules v0.0.10
  [ffbed154] DocStringExtensions v0.9.5
⌅ [53c48c17] FixedPointNumbers v0.6.1
⌃ [587475ba] Flux v0.6.6
⌅ [f6369f11] ForwardDiff v0.10.18
⌅ [d9f16b24] Functors v0.2.8
⌅ [92fee26a] GZip v0.5.2
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
⌅ [e5e0dc1b] Juno v0.7.2
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v1.2.0
⌅ [872c559c] NNlib v0.5.0
⌅ [77ba4419] NaNMath v0.3.7
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.1
⌅ [189a3867] Reexport v0.2.0
⌅ [ae029012] Requires v0.5.2
  [a2af1166] SortingAlgorithms v1.2.2
⌅ [276daf66] SpecialFunctions v0.10.3
  [90137ffa] StaticArrays v1.9.16
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
⌅ [2913bbd2] StatsBase v0.33.21
  [61cb6e9c] TopoChains v0.1.1
⌅ [a5390f91] ZipFile v0.7.0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.1
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.15.0+0
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
[ Info: Test FUNCTOPO
[ Info: Test TOPOCHAIN
Precompiling packages...
  11544.9 ms  ✓ ForwardDiff
Info Given Flux was explicitly requested, output will be shown live 
ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty(x::Module, f::Symbol)
    @ Base ./Base_compiler.jl:47
  [2] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  [3] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [4] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
  [5] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:307
  [6] top-level scope
    @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
  [7] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
  [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3024
  [9] top-level scope
    @ stdin:5
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2870
 [12] include_string
    @ ./loading.jl:2880 [inlined]
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:315
 [14] _start()
    @ Base ./client.jl:550
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
in expression starting at stdin:5
              ✗ Flux
  1 dependency successfully precompiled in 21 seconds. 71 already precompiled.

TopoChains: Error During Test at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/runtests.jl:9
  Got exception outside of a @test
  LoadError: The following 1 direct dependency failed to precompile:
  
  Flux 
  
  Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.12/Flux/jl_OEFmYX".
  ERROR: LoadError: UndefVarError: `Printf` not defined in `Base`
  Suggestion: check for spelling errors or missing imports.
  Stacktrace:
    [1] getproperty(x::Module, f::Symbol)
      @ Base ./Base_compiler.jl:47
    [2] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
    [3] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:307
    [4] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:71
    [5] include(mapexpr::Function, mod::Module, _path::String)
      @ Base ./Base.jl:307
    [6] top-level scope
      @ ~/.julia/packages/Flux/jbpWo/src/Flux.jl:14
    [7] include(mod::Module, _path::String)
      @ Base ./Base.jl:306
    [8] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
      @ Base ./loading.jl:3024
    [9] top-level scope
      @ stdin:5
   [10] eval(m::Module, e::Any)
      @ Core ./boot.jl:489
   [11] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
      @ Base ./loading.jl:2870
   [12] include_string
      @ ./loading.jl:2880 [inlined]
   [13] exec_options(opts::Base.JLOptions)
      @ Base ./client.jl:315
   [14] _start()
      @ Base ./client.jl:550
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/scalar.jl:42
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/tracker/Tracker.jl:1
  in expression starting at /home/pkgeval/.julia/packages/Flux/jbpWo/src/Flux.jl:1
  in expression starting at stdin:
  in expression starting at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/test_topochain.jl:1
Test Summary: | Pass  Error  Total   Time
TopoChains    |    9      1     10  32.8s
  FuncTopo    |    9             9   9.5s
RNG of the outermost testset: Random.Xoshiro(0xb6bcd5033c303008, 0x96fb1e3dbc7464c6, 0x20033e090d81b83e, 0xa80dabf510011fe5, 0xb41e199d251dd6d3)
ERROR: LoadError: Some tests did not pass: 9 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/TopoChains/SgTpE/test/runtests.jl:9

Testing failed after 46.83s

ERROR: LoadError: Package TopoChains errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:223
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:306
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:317
 [12] _start()
    @ Base ./client.jl:550
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 176.21s: package fails to precompile