Package evaluation to test TaijaInteroperability on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T16:46:53.539 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.91s ################################################################################ # Installation # Installing TaijaInteroperability... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8949ac52] + TaijaInteroperability v1.0.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [65ce6f38] + PackageExtensionCompat v1.0.2 [8949ac52] + TaijaInteroperability v1.0.2 Installation completed after 4.26s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 3132.4 ms ✓ LearnAPI 4381.9 ms ✓ Functors 1080.9 ms ✓ GZip 7319.6 ms ✓ DecisionTree 3642.4 ms ✓ BFloat16s 7682.5 ms ✓ CategoricalArrays 866.3 ms ✓ TaijaInteroperability 9258.2 ms ✓ UnitfulAtomic 6114.3 ms ✓ PeriodicTable 2656.0 ms ✓ MLJModelInterface 1415.9 ms ✓ Chemfiles_jll 89970.1 ms ✓ DataFrames 5229.5 ms ✓ NPZ 27772.1 ms ✓ ThreadsX 66071.8 ms ✓ MetaGraphs 1211.4 ms ✓ Tullio → TullioChainRulesCoreExt 1236.1 ms ✓ Tullio → TullioFillArraysExt 6923.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 4697.8 ms ✓ MultivariateStats 9045.2 ms ✓ GPUArrays → JLD2Ext 96237.3 ms ✓ Zygote 4769.7 ms ✓ MLDataDevices 21483.4 ms ✓ KernelFunctions 5242.9 ms ✓ Optimisers 7777.0 ms ✓ Pickle 4539.8 ms ✓ LLVM → BFloat16sExt 966.4 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 47159.9 ms ✓ ScientificTypes 23465.2 ms ✓ StatisticalMeasuresBase 3982.3 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1858.7 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 130033.1 ms ✓ PythonCall → CategoricalArraysExt 6248.3 ms ✓ AtomsBase 18692.2 ms ✓ MLJDecisionTreeInterface 8207.5 ms ✓ BangBang → BangBangDataFramesExt 7464.2 ms ✓ Transducers → TransducersDataFramesExt 195424.6 ms ✓ CausalInference 10542.2 ms ✓ Zygote → ZygoteDistancesExt 6400.1 ms ✓ Zygote → ZygoteColorsExt 1607.0 ms ✓ MLDataDevices → MLDataDevicesChainRulesCoreExt 61353.6 ms ✓ MLDataDevices → MLDataDevicesOneHotArraysExt 13535.5 ms ✓ MLDataDevices → MLDataDevicesGPUArraysExt 934.0 ms ✓ MLDataDevices → MLDataDevicesFillArraysExt 117230.4 ms ✓ MLDataDevices → MLDataDevicesZygoteExt 1468.1 ms ✓ MLDataDevices → MLDataDevicesSparseArraysExt 82713.9 ms ✓ MLDataDevices → MLDataDevicesMLUtilsExt 2214.6 ms ✓ MLDataDevices → MLDataDevicesChainRulesExt 66200.4 ms ✓ CategoricalDistributions 13252.1 ms ✓ Chemfiles 210524.6 ms ✓ Flux 28606.4 ms ✓ MLJModels 66126.4 ms ✓ MLJBase 204462.5 ms ✓ MLDatasets 103949.8 ms ? EnergySamplers 124139.3 ms ✓ LaplaceRedux 366873.9 ms ✓ CounterfactualExplanations 35204.8 ms ✓ CounterfactualExplanations → DecisionTreeExt 37807.1 ms ✓ CounterfactualExplanations → LaplaceReduxExt ✗ TaijaInteroperability → PyTorchModelExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_17279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000770779b67c10 Total snapshots: 439. Utilization: 0% ╎439 @Base/asyncevent.jl:359 (::Base.var"#634#635"{FileWatching.Pidfile.var… ╎ 439 @Base/asyncevent.jl:163 _trywait(t::Timer) ╎ 439 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Sp… ╎ 439 @Base/task.jl:1228 wait() 438╎ 439 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_59255.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_finish_task at /source/src/task.c:341 start_task at /source/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== 176186.1 ms ✓ TaijaData 58 dependencies successfully precompiled in 2689 seconds. 299 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ EnergySamplers │ WARNING: Method definition issparse(StructArrays.StructArray{T, N, C, I} where I where C<:Union{Tuple, NamedTuple{names, T} where T<:Tuple where names} where N where T) in module StructArraysSparseArraysExt at /home/pkgeval/.julia/packages/StructArrays/bgm9N/ext/StructArraysSparseArraysExt.jl:11 overwritten in module StructArraysSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ PythonCall → CategoricalArraysExt │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/CondaPkg.toml │ CondaPkg Resolving changes │ + libstdcxx │ + libstdcxx-ng │ + numpy │ + openssl │ + python │ + pytorch │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_SIPcvc/.CondaPkg │ ✔ Created /tmp/jl_SIPcvc/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_SIPcvc/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ libstdcxx = ">=3.4,<15.0" │ │ libstdcxx-ng = ">=3.4,<15.0" │ │ pytorch = "*" │ │ numpy = "*" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge", "pytorch"] │ │ channel-priority = "strict" │ └ description = "automatically generated by CondaPkg.jl" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_SIPcvc/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ ┌ TaijaData │ ====================================================================================== │ Information request received. A stacktrace will print followed by a 1.0 second profile │ ====================================================================================== │ │ cmd: /opt/julia/bin/julia 1263 running 1 of 1 │ │ signal (10): User defined signal 1 │ isexpr at ./expr.jl:38 [inlined] │ isterminator at ./../usr/share/julia/Compiler/src/ssair/ir.jl:3 [inlined] │ #218 at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:360 │ scan! at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:286 │ #ir_abstract_constant_propagation#214 at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:332 │ ir_abstract_constant_propagation at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:318 │ concrete_eval_invoke at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:28 │ abstract_eval_invoke_inst at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:47 │ reprocess_instruction! at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:168 │ #218 at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:364 │ scan! at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:286 │ #ir_abstract_constant_propagation#214 at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:332 │ ir_abstract_constant_propagation at ./../usr/share/julia/Compiler/src/ssair/irinterp.jl:318 │ semi_concrete_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1266 │ abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:893 │ abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:868 │ handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:168 │ infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:252 │ abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:338 │ abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2783 │ abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2890 │ abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2883 [inlined] │ abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3043 │ abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3386 │ abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3836 [inlined] │ abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3793 [inlined] │ typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4343 │ jfptr_typeinf_local_83491.1 at /opt/julia/lib/julia/sys.so (unknown line) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4501 │ typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1254 │ typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1437 [inlined] │ typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1446 │ jfptr_typeinf_ext_toplevel_80948.1 at /opt/julia/lib/julia/sys.so (unknown line) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ jl_type_infer at /source/src/gf.c:462 │ jl_compile_method_internal at /source/src/gf.c:3512 │ _jl_invoke at /source/src/gf.c:4002 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ jl_f__apply_iterate at /source/src/builtins.c:868 │ @warn at ./logging/logging.jl:268 │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_invoke at /source/src/gf.c:4017 │ jl_invoke_julia_macro at /source/src/ast.c:1138 │ jl_expand_macros at /source/src/ast.c:1200 │ jl_expand_macros at /source/src/ast.c:1249 │ jl_expand_macros at /source/src/ast.c:1249 │ jl_expand_macros at /source/src/ast.c:1249 │ jl_expand_macros at /source/src/ast.c:1249 │ ijl_expand_with_loc_warn at /source/src/ast.c:1314 │ jl_toplevel_eval_flex at /source/src/toplevel.c:972 │ ijl_toplevel_eval at /source/src/toplevel.c:1047 │ ijl_toplevel_eval_in at /source/src/toplevel.c:1092 │ eval at ./boot.jl:489 │ include_string at ./loading.jl:2870 │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ _include at ./loading.jl:2930 │ include at ./Base.jl:307 │ IncludeInto at ./Base.jl:308 │ jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ do_call at /source/src/interpreter.c:123 │ eval_value at /source/src/interpreter.c:243 │ eval_stmt_value at /source/src/interpreter.c:194 [inlined] │ eval_body at /source/src/interpreter.c:689 │ jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 │ jl_toplevel_eval_flex at /source/src/toplevel.c:1035 │ jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] │ jl_toplevel_eval_flex at /source/src/toplevel.c:814 │ jl_toplevel_eval_flex at /source/src/toplevel.c:975 │ ijl_toplevel_eval at /source/src/toplevel.c:1047 │ ijl_toplevel_eval_in at /source/src/toplevel.c:1092 │ eval at ./boot.jl:489 │ include_string at ./loading.jl:2870 │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ _include at ./loading.jl:2930 │ include at ./Base.jl:306 │ include_package_for_output at ./loading.jl:3024 │ jfptr_include_package_for_output_64774.1 at /opt/julia/lib/julia/sys.so (unknown line) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ do_call at /source/src/interpreter.c:123 │ eval_value at /source/src/interpreter.c:243 │ eval_stmt_value at /source/src/interpreter.c:194 [inlined] │ eval_body at /source/src/interpreter.c:689 │ jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 │ jl_toplevel_eval_flex at /source/src/toplevel.c:1035 │ jl_toplevel_eval_flex at /source/src/toplevel.c:975 │ ijl_toplevel_eval at /source/src/toplevel.c:1047 │ ijl_toplevel_eval_in at /source/src/toplevel.c:1092 │ eval at ./boot.jl:489 │ include_string at ./loading.jl:2870 │ include_string at ./loading.jl:2880 [inlined] │ exec_options at ./client.jl:315 │ _start at ./client.jl:550 │ jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ true_main at /source/src/jlapi.c:971 │ jl_repl_entrypoint at /source/src/jlapi.c:1139 │ main at /source/cli/loader_exe.c:58 │ unknown function (ip: 0x7a4fb1aa5249) at /lib/x86_64-linux-gnu/libc.so.6 │ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S │ unknown function (ip: (nil)) at (unknown file) │ │ ============================================================== │ Profile collected. A report will print at the next yield point │ ============================================================== │ │ │ ====================================================================================== │ Information request received. A stacktrace will print followed by a 1.0 second profile │ ====================================================================================== │ │ cmd: /opt/julia/bin/julia 1251 running 0 of 1 │ │ signal (10): User defined signal 1 │ epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) │ uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 │ uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 │ ijl_task_get_next at /source/src/scheduler.c:457 │ poptask at ./task.jl:1216 │ wait at ./task.jl:1228 │ #wait#398 at ./condition.jl:141 │ _trywait at ./asyncevent.jl:163 │ #634 at ./asyncevent.jl:359 │ unknown function (ip: 0x7997bd31ceff) at (unknown file) │ _jl_invoke at /source/src/gf.c:4010 [inlined] │ ijl_apply_generic at /source/src/gf.c:4210 │ jl_apply at /source/src/julia.h:2391 [inlined] │ start_task at /source/src/task.c:1252 │ unknown function (ip: (nil)) at (unknown file) │ │ ============================================================== │ Profile collected. A report will print at the next yield point │ ============================================================== │ │ ┌ Error: Profile printing listener crashed │ │ exception = │ │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ │ Stacktrace: │ │ [1] error(s::String) │ │ @ Base ./error.jl:44 │ │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing, from::Module) │ │ @ Base ./loading.jl:2789 │ │ [3] require_stdlib │ │ @ ./loading.jl:2785 [inlined] │ │ [4] macro expansion │ │ @ ./some.jl:158 [inlined] │ │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ │ @ Base ./Base.jl:333 │ │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ │ @ Base ./Base.jl:352 │ └ @ Base Base.jl:343 └ ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a48d0678d30 Total snapshots: 449. Utilization: 0% ╎449 @Base/task.jl:868 task_done_hook(t::Task) ╎ 449 @Base/task.jl:1228 wait() 448╎ 449 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… ERROR: LoadError: The following 1 direct dependency failed to precompile: TaijaInteroperability → PyTorchModelExt Failed to precompile PyTorchModelExt [e6061a3d-e8d4-5580-8dab-b529f3f5051e] to "/home/pkgeval/.julia/compiled/v1.12/PyTorchModelExt/jl_mtg7Hd". ERROR: LoadError: UndefVarError: `AbstractDifferentiableModel` not defined in `PyTorchModelExt` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [3] top-level scope @ ~/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:9 [4] include(mod::Module, _path::String) @ Base ./Base.jl:306 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [9] include_string @ ./loading.jl:2880 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [11] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/models.jl:3 in expression starting at /home/pkgeval/.julia/packages/TaijaInteroperability/tpgxD/ext/PyTorchModelExt/PyTorchModelExt.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 2654.69s ################################################################################ # Testing # PkgEval terminated after 2741.62s: test duration exceeded the time limit