Package evaluation to test TMLE on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T08:07:14.566 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.97s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8afdd2fb] + TMLE v0.20.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [15f4f7f2] + AutoHashEquals v2.2.0 [198e06fe] + BangBang v0.4.7 [9718e550] + Baselet v0.1.1 ⌅ [324d7699] + CategoricalArrays v0.10.9 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [38e38edf] + GLM v1.9.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.4 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [92ad9a40] + LearnAPI v1.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 ⌃ [a7f614a8] + MLJBase v1.9.2 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.12.1 ⌅ [d491faf4] + MLJModels v0.17.9 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.7.5 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.33 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 ⌃ [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 ⌅ [a19d573c] + StatisticalMeasures v0.2.1 [c062fc1d] + StatisticalMeasuresBase v0.1.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [8afdd2fb] + TMLE v0.20.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 40560.1 ms ✓ CausalTables 42890.0 ms ✓ MLJModels 81541.3 ms ? TMLE 710345.7 ms ✓ TMLE → CausalTablesExt 32638.2 ms ✓ TMLE → DifferentiationInterfaceExt 286408.6 ms ✓ TMLE → JSONExt 76899.0 ms ? TMLE → YAMLExt 5 dependencies successfully precompiled in 1291 seconds. 291 already precompiled. 2 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ TMLE → YAMLExt │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ TMLE │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 1299.08s ################################################################################ # Testing # Testing TMLE Status `/tmp/jl_VLWvCg/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [6af48e0c] CausalTables v1.3.4 [861a8166] Combinatorics v1.1.0 [a93c6f00] DataFrames v1.8.1 [a0c0ee7d] DifferentiationInterface v0.7.15 [31c24e10] Distributions v0.25.123 [09f84164] HypothesisTests v0.11.6 ⌃ [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [a7f614a8] MLJBase v1.9.2 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.1 ⌅ [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.13 [bac558e1] OrderedCollections v1.8.1 [860ef19b] StableRNGs v1.0.4 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [8afdd2fb] TMLE v0.20.3 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.1 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.10 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VLWvCg/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [a9b6321e] Atomix v1.1.2 [15f4f7f2] AutoHashEquals v2.2.0 [198e06fe] BangBang v0.4.7 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [6af48e0c] CausalTables v1.3.4 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.15 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.2 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.13.4 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.6 [7869d1d1] IRTools v0.4.15 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 ⌃ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [92ad9a40] LearnAPI v1.0.1 ⌃ [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [a7f614a8] MLJBase v1.9.2 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.12.1 ⌅ [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.13 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.5 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [872c559c] NNlib v0.9.33 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [d9ec5142] NamedTupleTools v0.14.3 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [8162dcfd] PrettyPrint v0.2.0 [54e16d92] PrettyPrinting v0.4.2 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 ⌃ [321657f4] ScientificTypes v3.1.1 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [a0a7dd2c] SparseMatricesCSR v0.6.9 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.2 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [8afdd2fb] TMLE v0.20.3 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [009559a3] XGBoost v2.5.2 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [4ee394cb] CUDA_Driver_jll v13.1.0+2 [76a88914] CUDA_Runtime_jll v0.20.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [bf13095a] XGBoost_GPU_jll v2.1.5+0 [a5c6f535] XGBoost_jll v2.1.5+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 11462.8 ms ✓ Optim 10294.0 ms ✓ MLJLinearModels 2 dependencies successfully precompiled in 24 seconds. 80 already precompiled. Precompiling packages... 1190.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 33612.2 ms ✓ TMLE → DifferentiationInterfaceExt 2 dependencies successfully precompiled in 41 seconds. 211 already precompiled. Precompiling packages... 3556.1 ms ✓ NNlib → NNlibForwardDiffExt 1 dependency successfully precompiled in 4 seconds. 50 already precompiled. Precompiling packages... 1846.1 ms ✓ Roots → RootsForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 31 already precompiled. Test Summary: | Pass Total Time Test expected_value | 3 3 1m15.7s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 19.2s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 32.3s Test Summary: | Pass Total Time Test selectcols | 5 5 1.3s Test Summary: | Pass Total Time supervised_learner_supports_weights | 7 7 4.3s Test Summary: | Pass Total Time Test check_inputs | 4 4 4.6s Test Summary: | Pass Total Time Test get_fluctuation_dataset | 6 6 11.0s Test Summary: | Pass Total Time Test choose_initial_dataset | 4 4 0.1s Test Summary: | Pass Total Time Test SCM | 17 17 7.4s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.3s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 5.2s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.4s Test Summary: | Pass Total Time Test ConditionalDistribution | 4 4 0.5s Test Summary: | Pass Total Time Test CMRelevantFactors | 3 3 0.6s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 7 7 8.0s fit_mlj_model supports weights: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:29 Expression: estimator(estimand, binary_dataset; cache = cache, verbosity = verbosity) Log Pattern: (:info, fit_log) Captured Logs: LogRecord(Info, "Estimating: P₀(Y | X₁, X₂)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/EtOhw/src/estimators.jl", 96, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`wts` keyword argument is deprecated, use `weights` instead", Core, :depwarn, (Ptr{Nothing}(0x000073c0b42f6211), :fit), "/home/pkgeval/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl", 88, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => fit(::Type{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Float64}}}) at statsmodel.jl:88, :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.12/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:26 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] macro expansion @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:29 [inlined] [ Info: Estimating: P₀(Y | X₁, X₂) fit_mlj_model supports weights: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:37 Expression: estimator(estimand, binary_dataset; cache = cache, verbosity = verbosity) Log Pattern: (:info, fit_log) Captured Logs: LogRecord(Info, "Estimating: P₀(Y | X₁, X₂)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/EtOhw/src/estimators.jl", 96, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`wts` keyword argument is deprecated, use `weights` instead", Core, :depwarn, (Ptr{Nothing}(0x000073c0b42f6211), :fit), "/home/pkgeval/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl", 88, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => fit(::Type{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Float64}}}) at statsmodel.jl:88, :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.12/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:26 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] macro expansion @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:37 [inlined] [ Info: Estimating: P₀(Y | X₁, X₂) Test Summary: | Pass Fail Total Time fit_mlj_model supports weights | 2 2 4 1m32.5s RNG of the outermost testset: Random.Xoshiro(0x7f926bb6862626d9, 0x51e8c60d6e9b6046, 0x9235bd31d81ead19, 0x212fdda3a865e35d, 0x38a87f51a55ae0b3) Error During Test at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/runtests.jl:12 Test threw exception Expression: include(joinpath(TEST_DIR, "estimators_and_estimates.jl")) LoadError: Some tests did not pass: 2 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:1 ERROR: LoadError: There was an error during testing in expression starting at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/runtests.jl:6 Testing failed after 416.24s ERROR: LoadError: Package TMLE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1766.56s: illegal method overwrites during precompilation