Package evaluation to test Stheno on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T23:45:36.370 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.02s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.67 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.96s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 54932.7 ms ✓ Stheno 1 dependency successfully precompiled in 58 seconds. 152 already precompiled. Precompilation completed after 76.61s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_4qhw11/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_4qhw11/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.3.4 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.67 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 13055.9 ms ✓ Documenter 1 dependency successfully precompiled in 14 seconds. 27 already precompiled. Precompiling packages... 5467.0 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 6 seconds. 18 already precompiled. Precompiling packages... 4757.7 ms ✓ StructArrays 9945.2 ms ✓ ForwardDiff 17656.3 ms ✓ GPUArrays 2647.0 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1350.7 ms ✓ StructArrays → StructArraysSparseArraysExt 868.4 ms ✓ StructArrays → StructArraysAdaptExt 965.7 ms ✓ StructArrays → StructArraysLinearAlgebraExt 4549.2 ms ✓ StructArrays → StructArraysStaticArraysExt 2152.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 15877.6 ms ✓ ChainRules 71662.4 ms ✓ Zygote 11 dependencies successfully precompiled in 134 seconds. 95 already precompiled. Precompiling packages... 10205.9 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 110 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/9Q2Lq/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#277` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 20m14.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1223s / 99.3% 30.1GiB / 99.7% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 793s 65.3% 793s 20.8GiB 69.2% 20.8GiB addition 1 449s 37.0% 449s 11.8GiB 39.4% 11.8GiB Standardised Tests (correlated sum) 1 253s 20.8% 253s 6.38GiB 21.2% 6.38GiB adj_ad 9 40.0s 3.3% 4.44s 1.04GiB 3.5% 118MiB adj_fd 9 10.8s 0.9% 1.20s 335MiB 1.1% 37.2MiB Standardised Tests (independent sum) 1 147s 12.1% 147s 5.12GiB 17.1% 5.12GiB adj_ad 9 28.4s 2.3% 3.16s 1.28GiB 4.3% 146MiB adj_fd 9 12.1s 1.0% 1.35s 321MiB 1.0% 35.7MiB Correlated GPs 1 45.7s 3.8% 45.7s 288MiB 0.9% 288MiB Consistency Tests 1 19.8s 1.6% 19.8s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 3.28s 0.3% 3.28s 45.1MiB 0.1% 45.1MiB Consistency Tests 1 1.69s 0.1% 1.69s 15.9MiB 0.1% 15.9MiB product 1 162s 13.4% 162s 4.21GiB 14.0% 4.21GiB multiply by function 1 90.4s 7.4% 90.4s 2.25GiB 7.5% 2.25GiB Diff Tests 1 54.5s 4.5% 54.5s 1.68GiB 5.6% 1.68GiB adj_ad 9 21.6s 1.8% 2.40s 919MiB 3.0% 102MiB adj_fd 9 6.30s 0.5% 700ms 124MiB 0.4% 13.8MiB Consistency Tests 1 6.22s 0.5% 6.22s 114MiB 0.4% 114MiB multiply by constant 1 71.9s 5.9% 71.9s 1.97GiB 6.5% 1.97GiB Diff Tests 1 54.0s 4.4% 54.0s 1.91GiB 6.4% 1.91GiB adj_ad 9 17.2s 1.4% 1.92s 853MiB 2.8% 94.8MiB adj_fd 9 12.5s 1.0% 1.38s 314MiB 1.0% 34.9MiB Consistency Tests 1 4.68s 0.4% 4.68s 21.5MiB 0.1% 21.5MiB GP mul errors 1 12.9ms 0.0% 12.9ms 41.1KiB 0.0% 41.1KiB compose 1 90.2s 7.4% 90.2s 2.52GiB 8.4% 2.52GiB general 1 55.2s 4.6% 55.2s 1.62GiB 5.4% 1.62GiB Diff Tests 1 48.6s 4.0% 48.6s 1.56GiB 5.2% 1.56GiB adj_ad 9 16.5s 1.4% 1.83s 780MiB 2.5% 86.7MiB adj_fd 9 5.78s 0.5% 643ms 125MiB 0.4% 13.9MiB Consistency Tests 1 5.15s 0.4% 5.15s 42.0MiB 0.1% 42.0MiB Stretch 1 28.6s 2.4% 28.6s 804MiB 2.6% 804MiB scalar stretch 1 27.7s 2.3% 27.7s 789MiB 2.6% 789MiB scalar input 1 26.8s 2.2% 26.8s 785MiB 2.6% 785MiB adj_fd 9 10.4s 0.9% 1.16s 301MiB 1.0% 33.4MiB adj_ad 9 4.11s 0.3% 457ms 148MiB 0.5% 16.4MiB vector input 1 950ms 0.1% 950ms 3.56MiB 0.0% 3.56MiB Vector stretch 1 793ms 0.1% 793ms 12.1MiB 0.0% 12.1MiB Matrix stretch 1 123ms 0.0% 123ms 3.24MiB 0.0% 3.24MiB Shift 1 3.42s 0.3% 3.42s 43.2MiB 0.1% 43.2MiB Shift{Float64} 1 1.74s 0.1% 1.74s 27.5MiB 0.1% 27.5MiB Shift{Vector{Float64}} 1 1.67s 0.1% 1.67s 15.7MiB 0.1% 15.7MiB Select 1 1.68s 0.1% 1.68s 34.4MiB 0.1% 34.4MiB evaluation 1 792ms 0.1% 792ms 22.0MiB 0.1% 22.0MiB idx isa Vector 1 521ms 0.0% 521ms 8.16MiB 0.0% 8.16MiB idx isa Integer 1 370ms 0.0% 370ms 4.28MiB 0.0% 4.28MiB Periodic 1 1.19s 0.1% 1.19s 36.0MiB 0.1% 36.0MiB cross 1 29.0s 2.4% 29.0s 1.33GiB 4.4% 1.33GiB block arrays 1 16.5s 1.4% 16.5s 872MiB 2.8% 872MiB Stheno._collect ∘ _mortar 1 13.7s 1.1% 13.7s 735MiB 2.4% 735MiB BlockVector 1 7.34s 0.6% 7.34s 321MiB 1.0% 321MiB adj_fd 1 983ms 0.1% 983ms 13.4MiB 0.0% 13.4MiB adj_ad 1 242ms 0.0% 242ms 16.7MiB 0.1% 16.7MiB BlockMatrix 1 6.32s 0.5% 6.32s 413MiB 1.3% 413MiB adj_fd 1 1.15s 0.1% 1.15s 132MiB 0.4% 132MiB adj_ad 1 61.2ms 0.0% 61.2ms 2.51MiB 0.0% 2.51MiB fdm stuff 1 2.85s 0.2% 2.85s 137MiB 0.4% 137MiB Correctness tests 1 8.38s 0.7% 8.38s 428MiB 1.4% 428MiB Standardised Tests 1 4.10s 0.3% 4.10s 58.5MiB 0.2% 58.5MiB gp 1 208s 17.1% 208s 4.97GiB 16.6% 4.97GiB adj_ad 2 22.3s 1.8% 11.2s 0.95GiB 3.2% 485MiB sparse gp 1 19.6s 1.6% 19.6s 375MiB 1.2% 375MiB SparseFiniteGP inference 1 14.1s 1.2% 14.1s 251MiB 0.8% 251MiB SparseFiniteGP methods 1 5.04s 0.4% 5.04s 119MiB 0.4% 119MiB SparseFiniteGP Constructors 1 374ms 0.0% 374ms 4.39MiB 0.0% 4.39MiB gp 1 19.2s 1.6% 19.2s 389MiB 1.3% 389MiB GP 1 18.9s 1.6% 18.9s 386MiB 1.3% 386MiB independent GPs 1 268ms 0.0% 268ms 2.80MiB 0.0% 2.80MiB wrapped AbstractGP 1 12.3ms 0.0% 12.3ms 299KiB 0.0% 299KiB adj_fd 2 3.57s 0.3% 1.78s 45.4MiB 0.1% 22.7MiB derived_gp 1 154μs 0.0% 154μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 146s 12.0% 146s 2.40GiB 8.0% 2.40GiB Zygote 1 29.0s 2.4% 29.0s 1.00GiB 3.3% 1.00GiB External Consistency 1 16.5s 1.4% 16.5s 105MiB 0.3% 105MiB nested gppp 1 15.0s 1.2% 15.0s 86.4MiB 0.3% 86.4MiB split 1 647ms 0.1% 647ms 12.5MiB 0.0% 12.5MiB gppp macro 1 59.1ms 0.0% 59.1ms 598KiB 0.0% 598KiB doctests 1 60.1s 4.9% 60.1s 1.63GiB 5.4% 1.63GiB BlockData 1 7.01s 0.6% 7.01s 242MiB 0.8% 242MiB vcat(::GPPPInput...) 1 1.93s 0.2% 1.93s 85.4MiB 0.3% 85.4MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1407.0s PkgEval succeeded after 1510.67s