Package evaluation to test SIRUS on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T07:00:51.336 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.2s ################################################################################ # Installation # Installing SIRUS... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [cdeec39e] + SIRUS v3.0.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.22.0 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.7 [9718e550] + Baselet v0.1.1 [324d7699] + CategoricalArrays v1.0.2 [af321ab8] + CategoricalDistributions v0.2.1 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v2.0.1 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.12.1 [6ee0df7b] + MLJLinearModels v0.10.1 [e80e1ace] + MLJModelInterface v1.12.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [872c559c] + NNlib v0.9.33 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [cdeec39e] + SIRUS v3.0.0 [321657f4] + ScientificTypes v3.1.2 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [c062fc1d] + StatisticalMeasuresBase v0.1.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 80583.3 ms ✓ CategoricalDistributions 34313.2 ms ? StatisticalMeasuresBase 50432.7 ms ✓ MLJLinearModels 211419.3 ms ✓ StatisticalMeasures 30150.3 ms ✓ MLJBase 14651.2 ms ✓ StatisticalMeasures → ScientificTypesExt 20797.7 ms ✓ MLJTestInterface 13663.0 ms ✓ MLJBase → DefaultMeasuresExt 44876.4 ms ✓ SIRUS 8 dependencies successfully precompiled in 520 seconds. 326 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ StatisticalMeasuresBase │ WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 626.27s ################################################################################ # Testing # Testing SIRUS Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_YmtVK8/Project.toml` [336ed68f] + CSV v0.10.15 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 [7806a523] + DecisionTree v0.12.4 [e30172f5] + Documenter v1.16.1 [eb30cadb] + MLDatasets v0.7.20 [c6f25543] + MLJDecisionTreeInterface v0.4.3 [72560011] + MLJTestInterface v0.2.9 [54119dfa] + MLJXGBoostInterface v0.3.13 [6f49c342] + RCall v0.14.11 [cdeec39e] + SIRUS v3.0.0 [860ef19b] + StableRNGs v1.0.4 [a19d573c] + StatisticalMeasures v0.3.4 Updating `/tmp/jl_YmtVK8/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [a963bdd2] + AtomsBase v0.5.2 ⌅ [ab4f0b2a] + BFloat16s v0.5.1 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [46823bd8] + Chemfiles v0.10.43 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [8f4d0f93] + Conda v1.10.3 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 [7806a523] + DecisionTree v0.12.4 [e30172f5] + Documenter v1.16.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [92fee26a] + GZip v0.6.2 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.4.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.19 [b5f81e59] + IOCapture v1.0.0 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [842dd82b] + InlineStrings v1.4.5 [7d512f48] + InternedStrings v0.7.0 [033835bb] + JLD2 v0.6.3 [682c06a0] + JSON v1.4.0 [0f8b85d8] + JSON3 v1.14.3 [0e77f7df] + LazilyInitializedFields v1.3.0 [8cdb02fc] + LazyModules v0.3.1 [e6f89c97] + LoggingExtras v1.2.0 [23992714] + MAT v0.11.4 [eb30cadb] + MLDatasets v0.7.20 [c6f25543] + MLJDecisionTreeInterface v0.4.3 [72560011] + MLJTestInterface v0.2.9 [54119dfa] + MLJXGBoostInterface v0.3.13 [3da0fdf6] + MPIPreferences v0.1.11 [dbb5928d] + MappedArrays v0.4.3 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [e94cdb99] + MosaicViews v0.3.4 [15e1cf62] + NPZ v0.4.3 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.6 [2dfb63ee] + PooledArrays v1.4.3 [6f49c342] + RCall v0.14.11 [2792f1a3] + RegistryInstances v0.1.0 [cdeec39e] + SIRUS v3.0.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a0a7dd2c] + SparseMatricesCSR v0.6.9 [860ef19b] + StableRNGs v1.0.4 [cae243ae] + StackViews v0.1.2 [a19d573c] + StatisticalMeasures v0.3.4 [3eaba693] + StatsModels v0.7.8 [4db3bf67] + StridedViews v0.4.3 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.2 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [009559a3] + XGBoost v2.5.2 [a5390f91] + ZipFile v0.10.1 [4ee394cb] + CUDA_Driver_jll v13.1.0+2 [76a88914] + CUDA_Runtime_jll v0.20.1+0 [78a364fa] + Chemfiles_jll v0.10.4+0 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [bf13095a] + XGBoost_GPU_jll v2.1.5+0 [a5c6f535] + XGBoost_jll v2.1.5+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.5+0 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_YmtVK8/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 [7806a523] DecisionTree v0.12.4 [e30172f5] Documenter v1.16.1 [eb30cadb] MLDatasets v0.7.20 [a7f614a8] MLJBase v1.12.1 [c6f25543] MLJDecisionTreeInterface v0.4.3 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.12.1 [72560011] MLJTestInterface v0.2.9 [54119dfa] MLJXGBoostInterface v0.3.13 [6f49c342] RCall v0.14.11 [cdeec39e] SIRUS v3.0.0 [860ef19b] StableRNGs v1.0.4 [a19d573c] StatisticalMeasures v0.3.4 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YmtVK8/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.22.0 [a9b6321e] Atomix v1.1.2 [a963bdd2] AtomsBase v0.5.2 ⌅ [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.7 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [af321ab8] CategoricalDistributions v0.2.1 [d360d2e6] ChainRulesCore v1.26.0 [46823bd8] Chemfiles v0.10.43 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.15 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [4e289a0a] EnumX v1.0.6 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.1 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [8cdb02fc] LazyModules v0.3.1 [92ad9a40] LearnAPI v2.0.1 ⌃ [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [23992714] MAT v0.11.4 [c2834f40] MLCore v1.0.0 [eb30cadb] MLDatasets v0.7.20 [a7f614a8] MLJBase v1.12.1 [c6f25543] MLJDecisionTreeInterface v0.4.3 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.12.1 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[b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 5592.3 ms ✓ StructUtils → StructUtilsTablesExt 1 dependency successfully precompiled in 6 seconds. 11 already precompiled. Precompiling packages... 1304.1 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 1 seconds. 19 already precompiled. Precompiling packages... 1402.5 ms ✓ BangBang → BangBangTablesExt 3277.8 ms ✓ MLCore 7365.3 ms ✓ ImageShow 8165.5 ms ✓ StatsBase 8642.8 ms ✓ Pickle 6841.1 ms ✓ Chemfiles 8413.5 ms ✓ BangBang → BangBangDataFramesExt 8525.1 ms ✓ MAT 12369.0 ms ✓ Transducers 7640.6 ms ✓ Transducers → TransducersDataFramesExt 2452.5 ms ✓ Transducers → TransducersAdaptExt 28277.3 ms ✓ FLoops 72599.5 ms ✓ MLUtils 45077.1 ms ✓ MLDatasets 14 dependencies successfully precompiled in 225 seconds. 200 already precompiled. Precompiling packages... 13602.1 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 14 seconds. 32 already precompiled. Precompiling packages... 9807.6 ms ✓ BangBang → BangBangDataFramesExt 1 dependency successfully precompiled in 11 seconds. 48 already precompiled. Precompiling packages... 7600.2 ms ✓ Transducers → TransducersDataFramesExt 1 dependency successfully precompiled in 9 seconds. 63 already precompiled. Precompiling packages... 3892.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 2657.6 ms ✓ PDMats → StatsBaseExt 2781.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3022.7 ms ✓ NNlib → NNlibSpecialFunctionsExt 22441.7 ms ✓ StatisticalMeasuresBase 11547.0 ms ✓ Distributions 5978.1 ms ✓ Distributions → DistributionsTestExt 8869.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 11728.8 ms ✓ ScientificTypes 14485.5 ms ✓ CategoricalDistributions 22969.3 ms ✓ MLJBase 11 dependencies successfully precompiled in 115 seconds. 139 already precompiled. Precompiling packages... 7370.4 ms ✓ MLJDecisionTreeInterface 1 dependency successfully precompiled in 8 seconds. 32 already precompiled. Precompiling packages... 8096.8 ms ✓ Optim 9657.2 ms ✓ MLJLinearModels 2 dependencies successfully precompiled in 20 seconds. 80 already precompiled. Precompiling packages... 3291.9 ms ✓ NNlib → NNlibForwardDiffExt 1 dependency successfully precompiled in 4 seconds. 50 already precompiled. Precompiling packages... 22616.0 ms ✓ MLJTestInterface 1 dependency successfully precompiled in 27 seconds. 166 already precompiled. Precompiling packages... 6346.4 ms ✓ XGBoost_GPU_jll 8345.4 ms ✓ XGBoost 9907.7 ms ✓ MLJXGBoostInterface 3 dependencies successfully precompiled in 25 seconds. 59 already precompiled. Precompiling packages... 1096.1 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling packages... 50741.5 ms ✓ StatisticalMeasures 12563.7 ms ✓ StatisticalMeasures → ScientificTypesExt 2 dependencies successfully precompiled in 67 seconds. 141 already precompiled. Precompiling packages... 15575.8 ms ✓ MLJBase → DefaultMeasuresExt 1 dependency successfully precompiled in 21 seconds. 152 already precompiled. Precompiling packages... 22124.8 ms ✓ SIRUS 1 dependency successfully precompiled in 27 seconds. 188 already precompiled. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time docs | 30 30 1m19.0s Test Summary: | Pass Total Time empiricalquantiles | 6 6 2.7s Test Summary: | Pass Total Time forest | 110 110 3.1s Test Summary: | Pass Total Time classification | 16 16 1m11.6s Test Summary: | Pass Total Time regression | 4 4 9.5s Test Summary: | Pass Total Time rules | 16 16 1m27.5s Test Summary: | Pass Total Time ruleshow | 7 7 1.8s Test Summary: | Pass Total Time dependent | 1039 1039 3.3s Test Summary: | Pass Total Time weights | 3 3 0.8s Test Summary: | Pass Total Time importance | 9 9 2.6s Precompiling packages... 5400.2 ms ✓ StatsModels 1 dependency successfully precompiled in 8 seconds. 81 already precompiled. rcall: Error During Test at /home/pkgeval/.julia/packages/SIRUS/P56zb/test/runtests.jl:44 Got exception outside of a @test LoadError: REvalError: Error in library("sirus") : there is no package called ‘sirus’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/JIY9I/src/io.jl:173 [2] handle_eval_stderr @ ~/.julia/packages/RCall/JIY9I/src/io.jl:167 [inlined] [3] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/JIY9I/src/eval.jl:103 [4] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/JIY9I/src/eval.jl:119 [5] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/JIY9I/src/eval.jl:136 [6] top-level scope @ ~/.julia/packages/SIRUS/P56zb/test/rcall.jl:74 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [8] top-level scope @ ~/.julia/packages/SIRUS/P56zb/test/runtests.jl:45 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [10] macro expansion @ ~/.julia/packages/SIRUS/P56zb/test/runtests.jl:45 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [15] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SIRUS/P56zb/test/rcall.jl:39 Test Summary: | Error Total Time rcall | 1 1 57.1s RNG of the outermost testset: Random.Xoshiro(0x8955d074d3759b52, 0x0db37558b7e6ad8a, 0x541eec9a240e625c, 0xca5e4592b2107479, 0xdf9eb6848de4bf0b) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SIRUS/P56zb/test/runtests.jl:43 Testing failed after 1123.83s ERROR: LoadError: Package SIRUS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1810.72s: illegal method overwrites during precompilation