Package evaluation to test SGtSNEpi on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T21:44:49.214 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.17s ################################################################################ # Installation # Installing SGtSNEpi... Resolving package versions... Installed Hwloc_jll ───────────── v2.12.2+0 Installed ArnoldiMethod ───────── v0.4.0 Installed XML2_jll ────────────── v2.13.9+0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed Inflate ─────────────── v0.1.5 Installed Preferences ─────────── v1.5.1 Installed ColorTypes ──────────── v0.11.5 Installed FixedPointNumbers ───── v0.8.5 Installed SGtSNEpi ────────────── v0.4.0 Installed JLLWrappers ─────────── v1.7.1 Installed StaticArraysCore ────── v1.4.4 Installed StaticArrays ────────── v1.9.16 Installed PrecompileTools ─────── v1.3.3 Installed Libiconv_jll ────────── v1.18.0+0 Installed OrderedCollections ──── v1.8.1 Installed AbstractTrees ───────── v0.4.5 Installed Hwloc ───────────────── v3.3.0 Installed sgtsnepi_jll ────────── v3.0.0+0 Installed NearestNeighbors ────── v0.4.26 Installed Reexport ────────────── v1.2.2 Installed CEnum ───────────────── v0.5.0 Installed Statistics ──────────── v1.11.1 Installed DataStructures ──────── v0.19.3 Installed Requires ────────────── v1.3.1 Installed FFTW_jll ────────────── v3.3.11+0 Installed MacroTools ──────────── v0.5.16 Installed StatsAPI ────────────── v1.8.0 Installed Colors ──────────────── v0.12.11 Installed Distances ───────────── v0.10.12 Installed Graphs ──────────────── v1.13.4 Installed SimpleTraits ────────── v0.9.5 Installing 6 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact sgtsnepi 157.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact XML2 2.5 MiB Installed artifact Hwloc 3.5 MiB Updating `~/.julia/environments/v1.12/Project.toml` [e6c19c8d] + SGtSNEpi v0.4.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [ec485272] + ArnoldiMethod v0.4.0 [fa961155] + CEnum v0.5.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.13.4 [0e44f5e4] + Hwloc v3.3.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [b8a86587] + NearestNeighbors v0.4.26 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [e6c19c8d] + SGtSNEpi v0.4.0 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [f5851436] + FFTW_jll v3.3.11+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [c2c51ba6] + sgtsnepi_jll v3.0.0+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4237.6 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 666.9 ms ✓ RangeArrays 589.6 ms ✓ MuladdMacro 5720.0 ms ✓ BaseDirs 795.0 ms ✓ AbstractFFTs 645.7 ms ✓ LaTeXStrings 652.8 ms ✓ IndirectArrays 641.9 ms ✓ PolygonOps 597.4 ms ✓ IteratorInterfaceExtensions 685.0 ms ✓ TensorCore 640.7 ms ✓ StatsAPI 637.8 ms ✓ Contour 2698.4 ms ✓ CEnum 1302.7 ms ✓ OffsetArrays 653.5 ms ✓ TriplotBase 1716.2 ms ✓ Format 1343.1 ms ✓ FillArrays 600.6 ms ✓ IntegerMathUtils 671.5 ms ✓ InverseFunctions 793.9 ms ✓ Statistics 814.7 ms ✓ IterTools 5106.9 ms ✓ MacroTools 2831.2 ms ✓ Grisu 2903.6 ms ✓ OrderedCollections 3035.2 ms ✓ Observables 1063.3 ms ✓ Requires 695.6 ms ✓ DataValueInterfaces 823.9 ms ✓ EnumX 863.1 ms ✓ StableRNGs 761.6 ms ✓ Reexport 1075.0 ms ✓ DocStringExtensions 1117.3 ms ✓ AbstractTrees 5164.9 ms ✓ IrrationalConstants 1077.1 ms ✓ IntervalSets 928.6 ms ✓ RoundingEmulator 974.2 ms ✓ Extents 795.4 ms ✓ PtrArrays 1261.2 ms ✓ TranscodingStreams 2753.1 ms ✓ AdaptivePredicates 3701.1 ms ✓ LazyModules 945.4 ms ✓ Inflate 3546.2 ms ✓ ConstructionBase 979.7 ms ✓ DataAPI 1105.9 ms ✓ StaticArraysCore 998.2 ms ✓ MappedArrays 1857.6 ms ✓ ProgressMeter 1748.7 ms ✓ PDMats 1350.4 ms ✓ WoodburyMatrices 4202.2 ms ✓ StructUtils 40693.5 ms ✓ Unitful 1357.0 ms ✓ Scratch 1185.8 ms ✓ Preferences 4061.7 ms ✓ Compat 3057.7 ms ✓ UnicodeFun 4295.3 ms ✓ PkgVersion 4950.1 ms ✓ AbstractFFTs → AbstractFFTsTestExt 924.4 ms ✓ TableTraits 905.1 ms ✓ StackViews 996.3 ms ✓ PaddedViews 1516.8 ms ✓ FillArrays → FillArraysSparseArraysExt 1242.2 ms ✓ Primes 2156.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 967.8 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1500.5 ms ✓ SignedDistanceFields 6134.5 ms ✓ FixedPointNumbers 4140.3 ms ✓ Distances 1203.7 ms ✓ Statistics → SparseArraysExt 945.0 ms ✓ FillArrays → FillArraysStatisticsExt 3041.5 ms ✓ SimpleTraits 802.3 ms ✓ Showoff 3246.4 ms ✓ DataStructures 878.4 ms ✓ Ratios 1046.3 ms ✓ Adapt 9913.9 ms ✓ FileIO 1500.4 ms ✓ LogExpFunctions 926.6 ms ✓ IntervalSets → IntervalSetsRandomExt 962.2 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1093.9 ms ✓ AliasTables 1092.0 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 921.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 4000.5 ms ✓ Missings 1473.5 ms ✓ FillArrays → FillArraysPDMatsExt 1457.7 ms ✓ AxisAlgorithms 1793.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1857.9 ms ✓ Unitful → InverseFunctionsUnitfulExt 1816.8 ms ✓ Unitful → PrintfExt 1144.2 ms ✓ RelocatableFolders 1139.5 ms ✓ JLLWrappers 909.9 ms ✓ PrecompileTools 4540.4 ms ✓ ComputePipeline 934.4 ms ✓ Compat → CompatLinearAlgebraExt 4803.7 ms ✓ Tables 1177.8 ms ✓ MosaicViews 3113.8 ms ✓ FFTA 4706.7 ms ✓ ColorTypes 1296.8 ms ✓ Distances → DistancesSparseArraysExt ✗ FLANN 1059.4 ms ✓ SortingAlgorithms 5168.3 ms ✓ QuadGK 835.2 ms ✓ Ratios → RatiosFixedPointNumbersExt 1261.0 ms ✓ Adapt → AdaptSparseArraysExt 902.5 ms ✓ OffsetArrays → OffsetArraysAdaptExt 830.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1584.3 ms ✓ AxisArrays 1387.8 ms ✓ Graphite2_jll 1482.8 ms ✓ Libmount_jll 1526.7 ms ✓ LLVMOpenMP_jll 1398.9 ms ✓ Bzip2_jll 1403.3 ms ✓ Xorg_libpciaccess_jll 1395.1 ms ✓ Rmath_jll 1396.0 ms ✓ Xorg_libXau_jll 1485.4 ms ✓ libpng_jll 1724.9 ms ✓ libfdk_aac_jll 1656.1 ms ✓ Imath_jll 1656.6 ms ✓ Giflib_jll 1480.0 ms ✓ LAME_jll 1503.5 ms ✓ LERC_jll 1399.4 ms ✓ EarCut_jll 1382.2 ms ✓ CRlibm_jll 1499.8 ms ✓ JpegTurbo_jll 1444.7 ms ✓ XZ_jll 1392.4 ms ✓ Ogg_jll 2191.2 ms ✓ Xorg_libXdmcp_jll 1981.6 ms ✓ x265_jll 1703.7 ms ✓ x264_jll 1521.4 ms ✓ libaom_jll 1456.0 ms ✓ Zstd_jll 1422.0 ms ✓ Expat_jll 1411.9 ms ✓ LZO_jll 1373.7 ms ✓ Opus_jll 1199.7 ms ✓ Xorg_xtrans_jll 1389.5 ms ✓ Libiconv_jll 1378.5 ms ✓ Libffi_jll 1378.0 ms ✓ isoband_jll 1380.1 ms ✓ FFTW_jll 1393.4 ms ✓ OpenSpecFun_jll 1388.6 ms ✓ Libuuid_jll 1391.4 ms ✓ FriBidi_jll 1406.3 ms ✓ OpenBLASConsistentFPCSR_jll 18563.8 ms ✓ StaticArrays 20604.6 ms ✓ SIMD 22088.1 ms ✓ Parsers 2387.2 ms ✓ FilePathsBase 4913.9 ms ✓ ChainRulesCore 4317.3 ms ✓ StructArrays 814.2 ms ✓ StructUtils → StructUtilsTablesExt 5508.0 ms ✓ QOI 6886.3 ms ✓ ColorVectorSpace 8830.2 ms ✓ Colors 7444.6 ms ✓ StatsBase 1400.6 ms ✓ Pixman_jll 1389.9 ms ✓ FreeType2_jll 1629.9 ms ✓ Rmath 1505.7 ms ✓ OpenEXR_jll 1206.1 ms ✓ CRlibm 1497.5 ms ✓ libsixel_jll 1467.2 ms ✓ libvorbis_jll 1537.3 ms ✓ Xorg_libxcb_jll 1434.1 ms ✓ Libtiff_jll 1398.7 ms ✓ XML2_jll 1531.0 ms ✓ GettextRuntime_jll 925.5 ms ✓ Isoband 1385.0 ms ✓ sgtsnepi_jll 5613.7 ms ✓ SpecialFunctions 6738.5 ms ✓ ArnoldiMethod 1508.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1721.4 ms ✓ FillArrays → FillArraysStaticArraysExt 1482.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1466.7 ms ✓ Adapt → AdaptStaticArraysExt 28472.4 ms ✓ GeometryBasics 25916.6 ms ✓ Automa 64420.0 ms ✓ TiffImages 10277.5 ms ✓ JSON 1051.1 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2891.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 1727.6 ms ✓ FilePaths 4426.2 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 913.7 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 883.8 ms ✓ Distances → DistancesChainRulesCoreExt 3384.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4678.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 925.2 ms ✓ StructArrays → StructArraysAdaptExt 1334.4 ms ✓ StructArrays → StructArraysSparseArraysExt 4541.1 ms ✓ StructArrays → StructArraysStaticArraysExt 919.1 ms ✓ StructArrays → StructArraysLinearAlgebraExt 1198.1 ms ✓ Animations 38147.4 ms ✓ ImageCore 9207.6 ms ✓ ColorSchemes 1544.5 ms ✓ PDMats → StatsBaseExt 1962.5 ms ✓ FreeType 1645.1 ms ✓ Fontconfig_jll 5407.5 ms ✓ OpenEXR 7967.3 ms ✓ IntervalArithmetic 1438.4 ms ✓ Xorg_libX11_jll 1429.8 ms ✓ Hwloc_jll 1474.7 ms ✓ Glib_jll 4788.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2311.4 ms ✓ HypergeometricFunctions 1386.9 ms ✓ ColorVectorSpace → SpecialFunctionsExt 9771.3 ms ✓ NearestNeighbors 13444.9 ms ✓ Graphs 15708.9 ms ✓ GridLayoutBase 2677.0 ms ✓ Packing 5900.7 ms ✓ ShaderAbstractions 4860.4 ms ✓ ColorBrewer 1485.1 ms ✓ FilePaths → FilePathsURIParserExt 7360.5 ms ✓ Interpolations 4128.6 ms ✓ ImageBase 7414.3 ms ✓ PNGFiles 10376.5 ms ✓ Sixel 10660.7 ms ✓ JpegTurbo 21056.8 ms ✓ PlotUtils 7856.0 ms ✓ FreeTypeAbstraction 1543.1 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1040.4 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1424.4 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1480.8 ms ✓ Xorg_libXrender_jll 1510.3 ms ✓ Xorg_libXext_jll 4382.6 ms ✓ Hwloc 5980.0 ms ✓ StatsFuns 3551.7 ms ✓ Graphs → GraphsSharedArraysExt 3756.9 ms ✓ Interpolations → InterpolationsUnitfulExt 6605.7 ms ✓ ImageAxes 32069.4 ms ✓ MathTeXEngine 8993.1 ms ✓ ExactPredicates 1496.5 ms ✓ Libglvnd_jll 1675.5 ms ✓ Cairo_jll 1166.8 ms ✓ Hwloc → HwlocTrees 1110.5 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3973.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9821.0 ms ✓ Distributions 3739.2 ms ✓ ImageMetadata 13194.3 ms ✓ DelaunayTriangulation 1550.7 ms ✓ libwebp_jll 1489.6 ms ✓ HarfBuzz_jll 5036.0 ms ✓ SGtSNEpi 3505.3 ms ✓ Distributions → DistributionsTestExt 5501.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 7291.3 ms ✓ Netpbm 8364.1 ms ✓ WebP 1512.0 ms ✓ libass_jll 3786.7 ms ✓ KernelDensity 4827.0 ms ✓ ImageIO 1590.8 ms ✓ FFMPEG_jll 412309.0 ms ✓ Makie 243 dependencies successfully precompiled in 1355 seconds. 42 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.12/FLANN/jl_1eciSL". ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:306 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [8] include_string @ ./loading.jl:2880 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [10] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1417.91s ################################################################################ # Testing # Testing SGtSNEpi Status `/tmp/jl_aSP6cs/Project.toml` ⌅ [5ae59095] Colors v0.12.11 [b4f34e82] Distances v0.10.12 [4ef67f76] FLANN v1.1.0 [86223c79] Graphs v1.13.4 [0e44f5e4] Hwloc v3.3.0 [ee78f7c6] Makie v0.24.8 [b8a86587] NearestNeighbors v0.4.26 [ae029012] Requires v1.3.1 [e6c19c8d] SGtSNEpi v0.4.0 [c2c51ba6] sgtsnepi_jll v3.0.0+0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_aSP6cs/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [9e28174c] BinDeps v1.0.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [d360d2e6] ChainRulesCore v1.26.0 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [95dc2771] ComputePipeline v0.1.6 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [b86e33f2] FFTA v0.3.1 [4ef67f76] FLANN v1.1.0 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.4 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [0e44f5e4] Hwloc v3.3.0 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.11 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.7 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [b8a86587] NearestNeighbors v0.4.26 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [e6c19c8d] SGtSNEpi v0.4.0 [fdea26ae] SIMD v3.7.2 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.1 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [30578b45] URIParser v0.4.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.27.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [e33a78d0] Hwloc_jll v2.12.2+0 [905a6f67] Imath_jll v3.2.2+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.30+0 [18a262bb] OpenEXR_jll v3.4.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.54+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [c2c51ba6] sgtsnepi_jll v3.0.0+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.151122 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.143896 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.143205 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.140917 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.140275 seconds) Iteration 299: error is 4.87866 (50 iterations in 0.139204 seconds) --- Time spent in each module --- Attractive forces: 0.621567 sec [78.6687%] | Repulsive forces: 0.16854 sec [21.3313%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.236726 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.224229 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.225363 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.226114 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.224667 seconds) Iteration 299: error is 4.78116 (50 iterations in 0.221623 seconds) --- Time spent in each module --- Attractive forces: 0.816379 sec [65.3553%] | Repulsive forces: 0.432761 sec [34.6447%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.742611 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.630922 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.776864 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.778202 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.773361 seconds) Iteration 299: error is 4.67269 (50 iterations in 0.749415 seconds) --- Time spent in each module --- Attractive forces: 0.944881 sec [21.9161%] | Repulsive forces: 3.36647 sec [78.0839%] [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 1 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.141422 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.13683 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.140092 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.132893 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.131172 seconds) Iteration 299: error is 4.87483 (50 iterations in 0.132364 seconds) --- Time spent in each module --- Attractive forces: 0.59405 sec [79.2138%] | Repulsive forces: 0.155882 sec [20.7862%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/Vn16E/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 2 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.246745 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.236035 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.235713 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.233525 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.23543 seconds) Iteration 299: error is 4.79152 (50 iterations in 0.232966 seconds) --- Time spent in each module --- Attractive forces: 0.855117 sec [65.4942%] | Repulsive forces: 0.450521 sec [34.5058%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/Vn16E/src/scenes.jl:264 [ Info: Forming kNN graph [k = 30 | type : exact] [ Info: All 5000 elements converged numerically, avg(#iter) = 18.0 [ Info: Forming kNN graph [k = 30 | type : flann] Number of vertices: 5000 Embedding dimensions: 3 Rescaling parameter λ: 10 Early exag. multiplier α: 12 Maximum iterations: 300 Early exag. iterations: 150 Learning rate: 200 Box side length h: 1 Drop edges originating from leaf nodes? 0 Number of processes: 1 5000 out of 5000 nodes already stochastic m = 5000 | n = 5000 | nnz = 222834 WARNING: Randomizing initial points; non-reproducible results Setting-up parallel (double-precision) FFTW: 1 Iteration 1: error is 4.93471 Iteration 50: error is 4.93471 (50 iterations in 0.84399 seconds) Iteration 100: error is 4.93471 (50 iterations in 0.795194 seconds) Iteration 150: error is 4.93471 (50 iterations in 0.784927 seconds) Iteration 200: error is 4.93471 (50 iterations in 0.784163 seconds) Iteration 250: error is 4.93471 (50 iterations in 0.790459 seconds) Iteration 299: error is 4.67893 (50 iterations in 0.794125 seconds) --- Time spent in each module --- Attractive forces: 0.996723 sec [21.4959%] | Repulsive forces: 3.64008 sec [78.5041%] ┌ Warning: Found `resolution` in the theme when creating a `Scene`. The `resolution` keyword for `Scene`s and `Figure`s has been deprecated. Use `Figure(; size = ...` or `Scene(; size = ...)` instead, which better reflects that this is a unitless size and not a pixel resolution. The key could also come from `set_theme!` calls or related theming functions. └ @ Makie ~/.julia/packages/Makie/Vn16E/src/scenes.jl:264 Precompiling packages... Info Given FLANN was explicitly requested, output will be shown live  ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] top-level scope  @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3024  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [8] include_string  @ ./loading.jl:2880 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [10] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin:5 ✗ FLANN 0 dependencies successfully precompiled in 14 seconds. 31 already precompiled. SGtSNEpi.jl: Error During Test at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Got exception outside of a @test The following 1 direct dependency failed to precompile: FLANN Failed to precompile FLANN [4ef67f76-e0de-5105-ac01-03b6482fb4f8] to "/home/pkgeval/.julia/compiled/v1.12/FLANN/jl_J1efiN". ERROR: LoadError: FLANN not properly installed. Please run Pkg.build("FLANN") Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] top-level scope @ ~/.julia/packages/FLANN/a7m6V/src/FLANN.jl:12 [3] include(mod::Module, _path::String) @ Base ./Base.jl:306 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [8] include_string @ ./loading.jl:2880 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [10] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/FLANN/a7m6V/src/FLANN.jl:3 in expression starting at stdin: Test Summary: | Pass Error Total Time SGtSNEpi.jl | 24 1 25 3m50.2s exact knn | 24 24 3m34.8s RNG of the outermost testset: Random.Xoshiro(0x0cb5c30a259347f4, 0x0f82bf56e2ed0ed0, 0x2e17efd5ecff8c67, 0xbb58bc9f4b685ad9, 0x4122d8977f32ae56) ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SGtSNEpi/PpCqk/test/runtests.jl:8 Testing failed after 317.14s ERROR: LoadError: Package SGtSNEpi errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1786.03s: package fails to precompile