Package evaluation to test RegressionDynamicCausalModeling on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T03:44:02.322 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.06s ################################################################################ # Installation # Installing RegressionDynamicCausalModeling... Resolving package versions... Installed RegressionDynamicCausalModeling ─ v0.2.1 Updating `~/.julia/environments/v1.12/Project.toml` [4fb452e6] + RegressionDynamicCausalModeling v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.16.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [4fb452e6] + RegressionDynamicCausalModeling v0.2.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3bb67fe8] + TranscodingStreams v0.11.3 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.5+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building RegressionDynamicCausalModeling → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0349d17ac4e69b726958b19beb6c4a667397cbf3/build.log` Installation completed after 18.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 75409.9 ms ✓ RegressionDynamicCausalModeling 1 dependency successfully precompiled in 80 seconds. 108 already precompiled. Precompilation completed after 102.34s ################################################################################ # Testing # Testing RegressionDynamicCausalModeling Status `/tmp/jl_2v8xGN/Project.toml` [4c88cf16] Aqua v0.8.14 ⌃ [c3a54625] JET v0.10.6 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [23992714] MAT v0.10.7 [4fb452e6] RegressionDynamicCausalModeling v0.2.1 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2v8xGN/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [e1450e63] BufferedStreams v1.2.2 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.9.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.16.0 [c27321d9] Glob v1.4.0 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 ⌃ [c3a54625] JET v0.10.6 [692b3bcd] JLLWrappers v1.7.1 [98e50ef6] JuliaFormatter v2.2.0 ⌃ [aa1ae85d] JuliaInterpreter v0.10.3 ⌅ [70703baa] JuliaSyntax v0.4.10 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [6f1432cf] LoweredCodeUtils v3.4.2 ⌅ [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [4fb452e6] RegressionDynamicCausalModeling v0.2.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3bb67fe8] TranscodingStreams v0.11.3 [f5851436] FFTW_jll v3.3.11+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.5+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 79182.3 ms ✓ RegressionDynamicCausalModeling 1 dependency successfully precompiled in 82 seconds. 93 already precompiled. Code linting: Error During Test at /home/pkgeval/.julia/packages/JET/z9poX/src/JETBase.jl:1055 Test threw exception Expression: (JET.report_package)(RegressionDynamicCausalModeling; toplevel_logger = nothing, target_defined_modules = true) Expected MethodTableView Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] invoke_mt_compiler(::Core.MethodTable, ::Symbol, ::Type, ::Vararg{Any}) @ Base ./reflection.jl:279 [3] _which(tt::Type; method_table::Core.MethodTable, world::UInt64, raise::Bool) @ Base ./reflection.jl:888 [4] _which @ ./reflection.jl:883 [inlined] [5] analyze_from_definitions!(analyzer::JET.JETAnalyzer{JET.BasicPass}, res::JET.VirtualProcessResult, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:614 [6] virtual_process(x::String, filename::String, analyzer::JET.JETAnalyzer{JET.BasicPass}, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:482 [7] #analyze_and_report_text!#141 @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:897 [inlined] [8] analyze_and_report_file!(analyzer::JET.JETAnalyzer{JET.BasicPass}, filename::String, pkgid::Base.PkgId; jetconfigs::@Kwargs{target_defined_modules::Bool, concretization_patterns::Vector{Symbol}, analyze_from_definitions::Bool, toplevel_logger::Nothing, ignore_missing_comparison::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:705 [9] analyze_and_report_package!(analyzer::JET.JETAnalyzer{JET.BasicPass}, package::Module; jetconfigs::@Kwargs{ignore_missing_comparison::Bool, toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:855 [10] analyze_and_report_package! @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:848 [inlined] [11] report_package(args::Module; ignore_missing_comparison::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1605 [12] func_test(func::typeof(report_package), testname::Symbol, args::Any; broken::Bool, skip::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:1067 [13] func_test @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:1052 [inlined] [14] #test_package#172 @ ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1632 [inlined] [15] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/HcxUA/test/runtests.jl:19 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [17] macro expansion @ ~/.julia/packages/RegressionDynamicCausalModeling/HcxUA/test/runtests.jl:19 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [19] top-level scope @ ~/.julia/packages/RegressionDynamicCausalModeling/HcxUA/test/runtests.jl:12 Test Summary: | Pass Error Total Time rDCM tests | 278 1 279 9m42.6s Code formatting | 1 1 24.2s Code linting | 1 1 1m47.3s Code quality | 9 9 1m18.5s Utils | 54 54 1m11.3s save/load DCM | 21 21 19.7s pretty print | 16 16 19.8s SPM compatibility | 17 17 9.0s Constructors | 143 143 4.3s Create HRF | 4 4 0.0s Generate synthetic data | 15 15 44.8s linear | 2 2 11.9s special cases | 4 4 20.2s bilinear | 2 2 5.4s nonlinear | 2 2 6.0s Priors | 25 25 5.8s Prior param | 10 10 0.0s Sample prior | 9 9 0.0s Rigid prior | 6 6 1.1s Create regressors | 3 3 1.6s Model inversion | 21 21 14.8s rigid rDCM | 7 7 1.6s sparse rDCM (fix C matrix) | 6 6 4.7s sparse rDCM (prune C matrix) | 6 6 4.9s Prediction | 3 3 13.1s rigid rDCM | 1 1 4.1s sparse rDCM | 1 1 7.9s error handling | 1 1 0.1s RNG of the outermost testset: Xoshiro(0xb71938b7c9e90544, 0x2563b3cad7c0f134, 0xefc0d719e9b22ce1, 0x05b34023aa18b929, 0xfdef48938853c964) ERROR: LoadError: Some tests did not pass: 278 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/HcxUA/test/runtests.jl:11 Testing failed after 742.82s ERROR: LoadError: Package RegressionDynamicCausalModeling errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 899.96s: package tests unexpectedly errored