Package evaluation to test PyCallJLD on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T00:35:22.949 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.86s ################################################################################ # Installation # Installing PyCallJLD... Resolving package versions... Installed XML2_jll ────────────── v2.13.9+0 Installed libaec_jll ──────────── v1.1.5+0 Installed MPICH_jll ───────────── v4.3.2+0 Installed Conda ───────────────── v1.10.3 Installed Blosc_jll ───────────── v1.21.7+0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed Preferences ─────────── v1.5.1 Installed JSON ────────────────── v1.4.0 Installed Zstd_jll ────────────── v1.5.7+1 Installed Hwloc_jll ───────────── v2.12.2+0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed Parsers ─────────────── v2.8.3 Installed JLLWrappers ─────────── v1.7.1 Installed PyCall ──────────────── v1.96.4 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed PrecompileTools ─────── v1.3.3 Installed Libiconv_jll ────────── v1.18.0+0 Installed DelimitedFiles ──────── v1.9.1 Installed HDF5 ────────────────── v0.14.1 Installed VersionParsing ──────── v1.3.0 Installed MPIPreferences ──────── v0.1.11 Installed FileIO ──────────────── v1.17.1 Installed MPItrampoline_jll ───── v5.5.4+0 Installed Lz4_jll ─────────────── v1.10.1+0 Installed PyCallJLD ───────────── v0.2.1 Installed JLD ─────────────────── v0.12.5 Installed Statistics ──────────── v1.11.1 Installed Requires ────────────── v1.3.1 Installed MacroTools ──────────── v0.5.16 Installed StructUtils ─────────── v2.6.2 Installed Blosc ───────────────── v0.7.3 Installed Compat ──────────────── v3.47.0 Installed HDF5_jll ────────────── v1.14.6+0 Installing 10 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Lz4 239.7 KiB Installed artifact Zstd 646.0 KiB Installed artifact Blosc 44.2 KiB Installed artifact libaec 49.6 KiB Installed artifact Hwloc 3.5 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact HDF5 5.7 MiB Installed artifact MPICH 3.3 MiB Updating `~/.julia/environments/v1.12/Project.toml` [de320387] + PyCallJLD v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [a74b3585] + Blosc v0.7.3 ⌅ [34da2185] + Compat v3.47.0 [8f4d0f93] + Conda v1.10.3 [8bb1440f] + DelimitedFiles v1.9.1 [5789e2e9] + FileIO v1.17.1 ⌅ [f67ccb44] + HDF5 v0.14.1 ⌅ [4138dd39] + JLD v0.12.5 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [438e738f] + PyCall v1.96.4 [de320387] + PyCallJLD v0.2.1 [ae029012] + Requires v1.3.1 [10745b16] + Statistics v1.11.1 [ec057cc2] + StructUtils v2.6.2 [81def892] + VersionParsing v1.3.0 [0b7ba130] + Blosc_jll v1.21.7+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.5+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building HDF5 ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/96d77533eb46e208e801b939db8a27626c166565/build.log` Installation completed after 139.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4309.4 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 1233.8 ms ✓ Statistics 7639.7 ms ✓ MacroTools 917.3 ms ✓ VersionParsing 1195.5 ms ✓ Requires 960.3 ms ✓ DelimitedFiles 4364.1 ms ✓ StructUtils 1140.6 ms ✓ Preferences 1294.6 ms ✓ Statistics → SparseArraysExt 9629.7 ms ✓ FileIO 1516.4 ms ✓ MPIPreferences 844.4 ms ✓ PrecompileTools 1146.9 ms ✓ JLLWrappers 8151.7 ms ✓ Compat 22158.1 ms ✓ Parsers 1141.5 ms ✓ MicrosoftMPI_jll 1467.7 ms ✓ Zstd_jll 1465.1 ms ✓ Libiconv_jll 1481.6 ms ✓ Lz4_jll 4564.5 ms ✓ MPItrampoline_jll 1457.0 ms ✓ Xorg_libpciaccess_jll 1529.6 ms ✓ libaec_jll 11319.1 ms ✓ JSON 1473.5 ms ✓ XML2_jll 1414.9 ms ✓ Blosc_jll 1937.2 ms ✓ Conda 1441.0 ms ✓ Hwloc_jll 1088.4 ms ✓ Blosc 28942.4 ms ✓ PyCall 4284.1 ms ✓ OpenMPI_jll 4850.2 ms ✓ MPICH_jll 5393.5 ms ✓ HDF5_jll 8277.2 ms ✓ HDF5 9038.2 ms ✓ JLD 14376.5 ms ✓ PyCallJLD 34 dependencies successfully precompiled in 169 seconds. 37 already precompiled. 1 dependency had output during precompilation: ┌ HDF5 │ WARNING: Constructor for type "Array" was extended in `HDF5` without explicit qualification or import. │ NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Array end`. │ Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. └ Precompilation completed after 196.2s ################################################################################ # Testing # Testing PyCallJLD Status `/tmp/jl_bwJmq3/Project.toml` ⌅ [4138dd39] JLD v0.12.5 [438e738f] PyCall v1.96.4 [de320387] PyCallJLD v0.2.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_bwJmq3/Manifest.toml` [a74b3585] Blosc v0.7.3 ⌅ [34da2185] Compat v3.47.0 [8f4d0f93] Conda v1.10.3 [8bb1440f] DelimitedFiles v1.9.1 [5789e2e9] FileIO v1.17.1 ⌅ [f67ccb44] HDF5 v0.14.1 ⌅ [4138dd39] JLD v0.12.5 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [438e738f] PyCall v1.96.4 [de320387] PyCallJLD v0.2.1 [ae029012] Requires v1.3.1 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.6.2 [81def892] VersionParsing v1.3.0 [0b7ba130] Blosc_jll v1.21.7+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.5+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Error encountered while save FileIO.File{FileIO.DataFormat{:JLD}, String}("/tmp/temp.jld"). Fatal error: ERROR: LoadError: FieldError: type DataType has no field `size`, available fields: `name`, `super`, `parameters`, `types`, `instance`, `layout`, `hash`, `flags` Stacktrace: [1] getproperty @ ./Base_compiler.jl:48 [inlined] [2] h5fieldtype(parent::JLD.JldFile, T::Any, commit::Bool) @ JLD ~/.julia/packages/JLD/9wjVw/src/jld_types.jl:313 [3] _write(parent::JLD.JldFile, path::String, data::Vector{PyObject}, wsession::JLD.JldWriteSession; kargs::@Kwargs{}) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:593 [4] _write(parent::JLD.JldFile, path::String, data::Vector{PyObject}, wsession::JLD.JldWriteSession) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:589 [5] write(parent::JLD.JldFile, name::String, data::Vector{PyObject}, wsession::JLD.JldWriteSession; kargs::@Kwargs{}) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:542 [6] (::JLD.var"#34#35"{String, Vector{PyObject}, Tuple{}})(file::JLD.JldFile) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:1260 [7] jldopen(::JLD.var"#34#35"{String, Vector{PyObject}, Tuple{}}, ::String, ::Vararg{String}; kws::@Kwargs{compatible::Bool, compress::Bool}) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:262 [8] fileio_save(::FileIO.File{FileIO.DataFormat{:JLD}, String}, ::String, ::Vector{PyObject}; compatible::Bool, compress::Bool) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:1259 [9] fileio_save(::FileIO.File{FileIO.DataFormat{:JLD}, String}, ::String, ::Vector{PyObject}) @ JLD ~/.julia/packages/JLD/9wjVw/src/JLD.jl:1255 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:219 [11] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted, ::String, ::Vector{PyObject}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:196 [12] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::Symbol, ::String, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:185 [13] save(::String, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:129 [14] save(::String, ::String, ::Vector{PyObject}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:125 [15] top-level scope @ ~/.julia/packages/PyCallJLD/ZrHbU/test/runtests.jl:10 Stacktrace: [1] handle_error(e::FieldError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/error_handling.jl:75 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:228 [4] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted, ::String, ::Vector{PyObject}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:196 [5] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::Symbol, ::String, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:185 [6] save(::String, ::String, ::Vararg{Any}; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:129 [7] save(::String, ::String, ::Vector{PyObject}) @ FileIO ~/.julia/packages/FileIO/EI2b8/src/loadsave.jl:125 [8] top-level scope @ ~/.julia/packages/PyCallJLD/ZrHbU/test/runtests.jl:10 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [13] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/PyCallJLD/ZrHbU/test/runtests.jl:8 Testing failed after 60.97s ERROR: LoadError: Package PyCallJLD errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 427.08s: package tests unexpectedly errored