Package evaluation to test MuseInference on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T03:01:10.144 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.94s ################################################################################ # Installation # Installing MuseInference... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [43b88160] + MuseInference v0.2.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 ⌅ [c29ec348] + AbstractDifferentiation v0.5.3 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 ⌅ [b0b7db55] + ComponentArrays v0.13.15 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 ⌅ [f6369f11] + ForwardDiff v0.10.39 ⌅ [d9f16b24] + Functors v0.4.12 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [692b3bcd] + JLLWrappers v1.7.1 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [43b88160] + MuseInference v0.2.4 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [d9ec5142] + NamedTupleTools v0.14.3 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [9449cd9e] + TSVD v0.4.4 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.1.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.86s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 3232.6 ms ✓ Atomix 4423.8 ms ✓ AbstractDifferentiation 963.8 ms ✓ TSVD 4644.6 ms ✓ StructArrays 9982.8 ms ✓ Roots 5423.1 ms ✓ Optimisers 1486.5 ms ✓ TransmuteDims 9790.6 ms ✓ SciMLOperators 46772.1 ms ✓ Polynomials 4773.3 ms ✓ SimplePartitions 13892.8 ms ✓ NestedTuples 13158.0 ms ✓ Transducers → TransducersLazyArraysExt 13233.8 ms ✓ MeasureBase 13024.3 ms ✓ ComponentArrays 7492.0 ms ? ArrayInterfaceStaticArrays 1312.7 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 7835.8 ms ✓ Interpolations 5402.7 ms ✓ MCMCDiagnostics 43697.0 ms ✓ AbstractMCMC 11694.0 ms ✓ GPUArrays 29671.9 ms ✓ Distributions 36667.5 ms ✓ TransformVariables 4267.2 ms ✓ LogDensityProblemsAD → LogDensityProblemsADForwardDiffExt 5355.1 ms ✓ PreallocationTools 28831.9 ms ✓ NLSolversBase 10913.4 ms ✓ KernelAbstractions 2120.6 ms ✓ AbstractDifferentiation → AbstractDifferentiationChainRulesCoreExt 3368.3 ms ✓ AbstractDifferentiation → AbstractDifferentiationFiniteDifferencesExt 6736.6 ms ✓ AbstractDifferentiation → AbstractDifferentiationForwardDiffExt 6266.3 ms ✓ CovarianceEstimation 902.1 ms ✓ StructArrays → StructArraysAdaptExt 1566.8 ms ✓ StructArrays → StructArraysSparseArraysExt 4621.4 ms ✓ StructArrays → StructArraysStaticArraysExt 914.4 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 2174.4 ms ✓ Accessors → StructArraysExt 7947.6 ms ✓ BangBang → BangBangStructArraysExt 1242.8 ms ✓ Roots → RootsChainRulesCoreExt 1722.0 ms ✓ Roots → RootsForwardDiffExt 22810.7 ms ✓ TensorCast 43998.3 ms ✓ SciMLBase 3278.6 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 4840.0 ms ✓ Polynomials → PolynomialsMutableArithmeticsExt 6971.4 ms ✓ SimplePolynomials 24207.7 ms ✓ Interpolations → InterpolationsForwardDiffExt 62595.5 ms ✓ AdvancedHMC 9934.1 ms ✓ AbstractPPL 34840.2 ms ✓ Distributions → DistributionsDensityInterfaceExt 7140.4 ms ✓ Distributions → DistributionsTestExt 10119.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 9798.3 ms ✓ SimpleRandom 8662.0 ms ✓ MCMCDiagnosticTools 48397.3 ms ✓ LabelledArrays 16724.6 ms ✓ LineSearches 3285.4 ms ✓ KernelAbstractions → SparseArraysExt 2584.3 ms ✓ KernelAbstractions → LinearAlgebraExt 20559.3 ms ✓ ChainRules 34393.2 ms ✓ TupleVectors 18651.5 ms ✓ DynamicHMC 3827.6 ms ✓ LinearAlgebraX 34967.3 ms ✓ EllipticalSliceSampling 10813.4 ms ✓ AdvancedMH 8448.0 ms ✓ AdvancedPS 30298.8 ms ✓ KernelDensity 197895.1 ms ✓ MeasureTheory 167597.5 ms ✓ SymbolicUtils 56935.7 ms ✓ Optim 14643.5 ms ✓ NNlib 73818.3 ms ✓ Zygote 34556.9 ms ✓ Bijectors 15920.3 ms ✓ DistributionsAD 88645.7 ms ✓ SampleChains 82248.5 ms ✓ AdvancedMH → AdvancedMHStructArraysExt 20346.3 ms ✓ AdvancedMH → AdvancedMHForwardDiffExt 110429.2 ms ✓ MCMCChains 160215.3 ms ✓ MuseInference 86898.3 ms ✓ SimpleGraphs 2979.4 ms ✓ NNlib → NNlibSpecialFunctionsExt 37080.3 ms ✓ NNlib → NNlibForwardDiffExt 96486.9 ms ✓ Zygote → ZygoteColorsExt 8279.3 ms ✓ LogDensityProblemsAD → LogDensityProblemsADZygoteExt 5945.3 ms ✓ AbstractDifferentiation → AbstractDifferentiationZygoteExt 77689.2 ms ✓ Bijectors → BijectorsZygoteExt 6132.5 ms ✓ Bijectors → BijectorsForwardDiffExt 15226.2 ms ✓ Bijectors → BijectorsLazyArraysExt 50658.6 ms ✓ DynamicPPL 20788.9 ms ✓ Bijectors → BijectorsDistributionsADExt 59110.3 ms ✓ AdvancedHMC → AdvancedHMCMCMCChainsExt 23555.6 ms ✓ AdvancedMH → AdvancedMHMCMCChainsExt 101867.0 ms ✓ SimplePosets 55931.9 ms ✓ Tracker 46943.9 ms ✓ DynamicPPL → DynamicPPLMCMCChainsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./process.jl:685 wait at ./process.jl:686 [inlined] success at ./process.jl:555 jfptr_success_17854.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #compilecache#894 at ./loading.jl:3233 compilecache at ./loading.jl:3189 [inlined] #_precompilepkgs##38 at ./precompilation.jl:1026 with_logstate at ./logging/logging.jl:542 with_logger at ./logging/logging.jl:653 [inlined] #_precompilepkgs##36 at ./precompilation.jl:1020 [inlined] #mkpidlock#8 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 jfptr_YY.mkpidlockYY.8_58603.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:90 #mkpidlock#7 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] mkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 jfptr_mkpidlock_72202.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 #trymkpidlock#13 at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 trymkpidlock at /source/usr/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:112 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 #invokelatest_gr#232 at ./reflection.jl:1297 [inlined] invokelatest_gr at ./reflection.jl:1289 [inlined] precompile_pkgs_maybe_cachefile_lock at ./precompilation.jl:1217 #_precompilepkgs##32 at ./precompilation.jl:984 jfptr_YY._precompilepkgsYY.YY.32_17343.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000743f9767eb30 Total snapshots: 590. Utilization: 0% ╎590 @Base/precompilation.jl:984 (::Base.Precompilation.var"#_precompilepkg… ╎ 590 @Base/…ecompilation.jl:1217 precompile_pkgs_maybe_cachefile_lock(f::B… ╎ 590 @Base/reflection.jl:1289 invokelatest_gr ╎ 590 @Base/reflection.jl:1297 #invokelatest_gr#232 ╎ 590 @FileWatching/…file.jl:112 kwcall(::@NamedTuple{stale_age::Int64},… ╎ 590 @FileWatching/…ile.jl:114 trymkpidlock(::Function, ::Vararg{Any};… ╎ ╎ 590 @FileWatching/…ile.jl:88 kwcall(::@NamedTuple{stale_age::Int64, … ╎ ╎ 590 @FileWatching/…ile.jl:88 #mkpidlock#7 ╎ ╎ 590 @FileWatching/…le.jl:90 kwcall(::@NamedTuple{stale_age::Int64,… ╎ ╎ 590 @FileWatching/…le.jl:93 mkpidlock(f::Base.Precompilation.var"… ╎ ╎ 590 @Base/…mpilation.jl:1020 #_precompilepkgs##36 ╎ ╎ ╎ 590 @Base/…g/logging.jl:653 with_logger ╎ ╎ ╎ 590 @Base/…/logging.jl:542 with_logstate(f::Base.Precompilatio… ╎ ╎ ╎ 590 @Base/…pilation.jl:1026 (::Base.Precompilation.var"#_prec… ╎ ╎ ╎ 590 @Base/loading.jl:3189 compilecache ╎ ╎ ╎ 590 @Base/loading.jl:3233 compilecache(pkg::Base.PkgId, pat… ╎ ╎ ╎ ╎ 590 @Base/process.jl:555 success(x::Base.Process) ╎ ╎ ╎ ╎ 590 @Base/process.jl:686 wait ╎ ╎ ╎ ╎ 590 @Base/process.jl:685 wait(x::Base.Process, syncd::Bo… ╎ ╎ ╎ ╎ 590 @Base/…dition.jl:141 wait(c::Base.GenericCondition{… ╎ ╎ ╎ ╎ 590 @Base/task.jl:1228 wait() 589╎ ╎ ╎ ╎ ╎ 590 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinke… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_59255.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_finish_task at /source/src/task.c:341 start_task at /source/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000079c905c69000 Total snapshots: 403. Utilization: 0% ╎403 @Base/task.jl:868 task_done_hook(t::Task) ╎ 403 @Base/task.jl:1228 wait() 402╎ 403 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_9934.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 12150560 (Pool: 12149978; Big: 582); GC: 11 [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_17279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 37804118 (Pool: 37803160; Big: 958); GC: 31 PkgEval terminated after 2736.57s: test duration exceeded the time limit