Package evaluation to test LikelihoodProfiler on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-27T04:48:52.180 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.99s ################################################################################ # Installation # Installing LikelihoodProfiler... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [93acb638] + LikelihoodProfiler v1.3.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [82cc6244] + DataInterpolations v7.2.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [9aa1b823] + FastClosures v0.3.2 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.8.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [b964fa9f] + LaTeXStrings v1.4.0 [93acb638] + LikelihoodProfiler v1.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [77ba4419] + NaNMath v1.1.3 [bca83a33] + OptimizationBase v4.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.46.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [0bca4576] + SciMLBase v2.135.0 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [91c51154] + SentinelArrays v1.4.9 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.3 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 83263.4 ms ✓ OptimizationBase 79014.8 ms ✓ LineSearch → LineSearchLineSearchesExt 30174.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 102757.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 4604.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 4659.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 18261.1 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 10505.8 ms ✓ LinearSolve → LinearSolveForwardDiffExt 31661.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 71011.6 ms ✓ SciMLBase → SciMLBaseDistributionsExt 5601.8 ms ✓ DataInterpolations → DataInterpolationsChainRulesCoreExt 5390.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 7897.4 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 83855.6 ms ✓ OrdinaryDiffEqCore 85149.1 ms ✓ OptimizationNLopt 8658.5 ms ✓ OptimizationLBFGSB 78508.4 ms ✓ NonlinearSolveSpectralMethods 12358.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 84252.4 ms ✓ SimpleNonlinearSolve 94347.0 ms ✓ NonlinearSolveQuasiNewton 68904.6 ms ✓ NonlinearSolveFirstOrder 245224.4 ms ✓ LikelihoodProfiler 161776.9 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 33891.6 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 44927.4 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 93345.8 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 29804.3 ms ✓ LikelihoodProfiler → CICOBaseExt 8020.7 ms ✓ OrdinaryDiffEqExplicitRK 8886.1 ms ✓ OrdinaryDiffEqHighOrderRK 11751.9 ms ✓ OrdinaryDiffEqStabilizedRK 8567.5 ms ✓ OrdinaryDiffEqSymplecticRK 10810.6 ms ✓ OrdinaryDiffEqSSPRK 11940.5 ms ✓ OrdinaryDiffEqLowOrderRK 7767.7 ms ✓ OrdinaryDiffEqFunctionMap 21046.9 ms ✓ OrdinaryDiffEqLinear 17609.5 ms ✓ OrdinaryDiffEqTsit5 77688.2 ms ✓ OrdinaryDiffEqVerner 8765.2 ms ✓ OrdinaryDiffEqPRK 9287.6 ms ✓ OrdinaryDiffEqRKN 8907.8 ms ✓ OrdinaryDiffEqFeagin 8241.4 ms ✓ OrdinaryDiffEqQPRK 11245.2 ms ✓ OrdinaryDiffEqLowStorageRK 337170.0 ms ✓ OrdinaryDiffEqDifferentiation 280151.9 ms ✓ NonlinearSolve 20687.8 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 25977.4 ms ✓ OrdinaryDiffEqNordsieck 93005.6 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 26924.4 ms ✓ OrdinaryDiffEqExponentialRK ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_17279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) 20029.3 ms ✓ OrdinaryDiffEqExtrapolation ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007258408d5690 Total snapshots: 212. Utilization: 1% ╎212 @Base/precompilation.jl:984 (::Base.Precompilation.var"#_precompilepkg… ╎ 212 @Base/…ecompilation.jl:1217 precompile_pkgs_maybe_cachefile_lock(f::B… ╎ 212 @Base/reflection.jl:1289 invokelatest_gr ╎ 212 @Base/reflection.jl:1297 #invokelatest_gr#232 ╎ 212 @FileWatching/…file.jl:112 kwcall(::@NamedTuple{stale_age::Int64},… ╎ 212 @FileWatching/…ile.jl:114 trymkpidlock(::Function, ::Vararg{Any};… ╎ ╎ 212 @FileWatching/…ile.jl:88 kwcall(::@NamedTuple{stale_age::Int64, … ╎ ╎ 212 @FileWatching/…ile.jl:88 #mkpidlock#7 ╎ ╎ 212 @FileWatching/…le.jl:90 kwcall(::@NamedTuple{stale_age::Int64,… ╎ ╎ 1 @FileWatching/…le.jl:91 mkpidlock(f::Base.Precompilation.var"… ╎ ╎ 1 @FileWatching/…le.jl:61 mkpidlock ╎ ╎ ╎ 1 @FileWatching/…e.jl:66 mkpidlock(at::String, pid::Int32; st… ╎ ╎ ╎ 1 @FileWatching/….jl:235 open_exclusive ╎ ╎ ╎ 1 @FileWatching/….jl:242 open_exclusive(path::String; mode:… ╎ ╎ ╎ 1 @FileWatching/….jl:215 tryopen_exclusive(path::String, m… ╎ ╎ ╎ 1 @Base/…esystem.jl:185 open(path::String, flags::UInt16,… ╎ ╎ 211 @FileWatching/…le.jl:93 mkpidlock(f::Base.Precompilation.var"… ╎ ╎ 211 @Base/…mpilation.jl:1020 #_precompilepkgs##36 ╎ ╎ ╎ 211 @Base/…g/logging.jl:653 with_logger ╎ ╎ ╎ 211 @Base/…/logging.jl:542 with_logstate(f::Base.Precompilatio… ╎ ╎ ╎ 211 @Base/…pilation.jl:1026 (::Base.Precompilation.var"#_prec… ╎ ╎ ╎ 211 @Base/loading.jl:3189 compilecache ╎ ╎ ╎ 1 @Base/loading.jl:3231 compilecache(pkg::Base.PkgId, pat… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3107 create_expr_cache(pkg::Base.PkgI… ╎ ╎ ╎ ╎ 1 @Base/process.jl:379 open(cmds::Base.CmdRedirect, mod… ╎ ╎ ╎ ╎ 1 @Base/process.jl:396 open ╎ ╎ ╎ ╎ 1 @Base/process.jl:410 open(cmds::Base.CmdRedirect, s… ╎ ╎ ╎ ╎ 1 @Base/…ocess.jl:147 _spawn ╎ ╎ ╎ ╎ ╎ 1 @Base/…ocess.jl:235 setup_stdios(f::Base.var"#_sp… ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:148 #_spawn##0 ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:178 _spawn(::Base.CmdRedirect, :… ╎ ╎ ╎ ╎ ╎ 1 @Base/…cess.jl:178 _spawn(::Base.CmdRedirect, … ╎ ╎ ╎ ╎ ╎ 1 @Base/…ess.jl:156 _spawn 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ess.jl:119 _spawn_primitive(file::Str… ╎ ╎ ╎ 210 @Base/loading.jl:3233 compilecache(pkg::Base.PkgId, pat… ╎ ╎ ╎ ╎ 210 @Base/process.jl:555 success(x::Base.Process) ╎ ╎ ╎ ╎ 210 @Base/process.jl:686 wait ╎ ╎ ╎ ╎ 210 @Base/process.jl:685 wait(x::Base.Process, syncd::Bo… ╎ ╎ ╎ ╎ 210 @Base/…dition.jl:141 wait(c::Base.GenericCondition{… ╎ ╎ ╎ ╎ 210 @Base/task.jl:1228 wait() 210╎ ╎ ╎ ╎ ╎ 210 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinke… Task 0x00007258408d5870 Total snapshots: 1. Utilization: 100% ╎1 @Base/precompilation.jl:984 (::Base.Precompilation.var"#_precompilepkgs##3… ╎ 1 @Base/precompilation.jl:1217 precompile_pkgs_maybe_cachefile_lock(f::Base… ╎ 1 @Base/reflection.jl:1289 invokelatest_gr ╎ 1 @Base/reflection.jl:1297 #invokelatest_gr#232 ╎ 1 @FileWatching/…dfile.jl:112 kwcall(::@NamedTuple{stale_age::Int64}, ::… ╎ 1 @FileWatching/…dfile.jl:114 trymkpidlock(::Function, ::Vararg{Any}; k… ╎ ╎ 1 @FileWatching/…dfile.jl:88 kwcall(::@NamedTuple{stale_age::Int64, wa… ╎ ╎ 1 @FileWatching/…file.jl:88 #mkpidlock#7 ╎ ╎ 1 @FileWatching/…file.jl:90 kwcall(::@NamedTuple{stale_age::Int64, w… ╎ ╎ 1 @FileWatching/…file.jl:93 mkpidlock(f::Base.Precompilation.var"#_… ╎ ╎ 1 @Base/…ompilation.jl:1020 #_precompilepkgs##36 ╎ ╎ ╎ 1 @Base/…ng/logging.jl:653 with_logger ╎ ╎ ╎ 1 @Base/…ng/logging.jl:542 with_logstate(f::Base.Precompilation.… ╎ ╎ ╎ 1 @Base/…mpilation.jl:1026 (::Base.Precompilation.var"#_precomp… ╎ ╎ ╎ 1 @Base/loading.jl:3189 compilecache ╎ ╎ ╎ 1 @Base/loading.jl:3252 compilecache(pkg::Base.PkgId, path::S… ╎ ╎ ╎ ╎ 1 @Base/io.jl:407 open ╎ ╎ ╎ ╎ 1 @Base/loading.jl:3253 (::Base.var"#897#898"{Base.PkgId, S… Task 0x00007258198831c0 Total snapshots: 165. Utilization: 0% ╎165 @Base/asyncevent.jl:359 (::Base.var"#634#635"{FileWatching.Pidfile.var… ╎ 165 @Base/asyncevent.jl:163 _trywait(t::Timer) ╎ 165 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Sp… ╎ 165 @Base/task.jl:1228 wait() 164╎ 165 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_59255.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_finish_task at /source/src/task.c:341 start_task at /source/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000773b41a67d00 Total snapshots: 374. Utilization: 0% ╎374 @Base/task.jl:868 task_done_hook(t::Task) ╎ 374 @Base/task.jl:1228 wait() 373╎ 374 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_17279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 84286548 (Pool: 84285597; Big: 951); GC: 82 PkgEval terminated after 2733.2s: test duration exceeded the time limit