Package evaluation to test HiddenMarkovModels on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T20:10:31.370 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.04s ################################################################################ # Installation # Installing HiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [84ca31d5] + HiddenMarkovModels v0.7.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [b429d917] + DensityInterface v0.4.0 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [84ca31d5] + HiddenMarkovModels v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [21216c6a] + Preferences v1.5.1 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 4.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 13871.2 ms ✓ HiddenMarkovModels 3226.8 ms ✓ Distributions → DistributionsDensityInterfaceExt 15799.0 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 3 dependencies successfully precompiled in 38 seconds. 186 already precompiled. Precompilation completed after 52.17s ################################################################################ # Testing # Testing HiddenMarkovModels Status `/tmp/jl_IElai3/Project.toml` [4c88cf16] Aqua v0.8.14 [b0b7db55] ComponentArrays v0.15.31 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.123 [e30172f5] Documenter v1.16.1 [7da242da] Enzyme v0.13.119 [f6369f11] ForwardDiff v1.3.1 [84ca31d5] HiddenMarkovModels v0.7.0 ⌃ [c3a54625] JET v0.10.6 [98e50ef6] JuliaFormatter v2.2.0 [aa2f6b4e] LogarithmicNumbers v1.4.1 [eff96d63] Measurements v2.14.1 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.12.1 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_IElai3/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.22.0 [fa961155] CEnum v0.5.0 [49dc2e85] Calculus v0.5.2 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [b0b7db55] ComponentArrays v0.15.31 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [7da242da] Enzyme v0.13.119 [f151be2c] EnzymeCore v0.8.18 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.8.1 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [84ca31d5] HiddenMarkovModels v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌃ [c3a54625] JET v0.10.6 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [98e50ef6] JuliaFormatter v2.2.0 ⌃ [aa1ae85d] JuliaInterpreter v0.10.3 ⌅ [70703baa] JuliaSyntax v0.4.10 [929cbde3] LLVM v9.4.4 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 ⌃ [6f1432cf] LoweredCodeUtils v3.4.2 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [53d494c1] StructIO v0.3.1 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [7cc45869] Enzyme_jll v0.0.240+0 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 3477.5 ms ✓ HiddenMarkovModels 1 dependency successfully precompiled in 4 seconds. 46 already precompiled. Resolving package versions... Updating `/tmp/jl_IElai3/Project.toml` [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` Updating `/tmp/jl_IElai3/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.3 [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` [9abbd945] + Profile v1.11.0 Precompiling packages... 6972.5 ms ✓ Distributions 1 dependency successfully precompiled in 8 seconds. 40 already precompiled. Precompiling packages... 2652.7 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 2587.9 ms ✓ Distributions → DistributionsDensityInterfaceExt 2784.6 ms ✓ Distributions → DistributionsTestExt 4516.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 4 dependencies successfully precompiled in 14 seconds. 64 already precompiled. Precompiling packages... 12383.8 ms ✓ ChainRules 48598.9 ms ✓ Zygote 2 dependencies successfully precompiled in 61 seconds. 65 already precompiled. Code linting: Error During Test at /home/pkgeval/.julia/packages/JET/z9poX/src/JETBase.jl:1055 Test threw exception Expression: (JET.report_package)(HiddenMarkovModels; toplevel_logger = nothing, target_defined_modules = true) Expected MethodTableView Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] invoke_mt_compiler(::Core.MethodTable, ::Symbol, ::Type, ::Vararg{Any}) @ Base ./reflection.jl:279 [3] _which(tt::Type; method_table::Core.MethodTable, world::UInt64, raise::Bool) @ Base ./reflection.jl:888 [4] _which @ ./reflection.jl:883 [inlined] [5] analyze_from_definitions!(analyzer::JET.JETAnalyzer{JET.BasicPass}, res::JET.VirtualProcessResult, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:614 [6] virtual_process(x::String, filename::String, analyzer::JET.JETAnalyzer{JET.BasicPass}, config::JET.ToplevelConfig) @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:482 [7] #analyze_and_report_text!#141 @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:897 [inlined] [8] analyze_and_report_file!(analyzer::JET.JETAnalyzer{JET.BasicPass}, filename::String, pkgid::Base.PkgId; jetconfigs::@Kwargs{target_defined_modules::Bool, concretization_patterns::Vector{Symbol}, analyze_from_definitions::Bool, toplevel_logger::Nothing, ignore_missing_comparison::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:705 [9] analyze_and_report_package!(analyzer::JET.JETAnalyzer{JET.BasicPass}, package::Module; jetconfigs::@Kwargs{ignore_missing_comparison::Bool, toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:855 [10] analyze_and_report_package! @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:848 [inlined] [11] report_package(args::Module; ignore_missing_comparison::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1605 [12] func_test(func::typeof(report_package), testname::Symbol, args::Any; broken::Bool, skip::Bool, jetconfigs::@Kwargs{toplevel_logger::Nothing, target_defined_modules::Bool}) @ JET ~/.julia/packages/JET/z9poX/src/JETBase.jl:1067 [13] func_test @ ~/.julia/packages/JET/z9poX/src/JETBase.jl:1052 [inlined] [14] #test_package#172 @ ~/.julia/packages/JET/z9poX/src/analyzers/jetanalyzer.jl:1632 [inlined] [15] top-level scope @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [17] macro expansion @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:34 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [19] macro expansion @ ~/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:37 [inlined] Precompiling packages... 4551.7 ms ✓ Functors 5712.9 ms ✓ ComponentArrays 2 dependencies successfully precompiled in 11 seconds. 23 already precompiled. Precompiling packages... 1874.9 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. Precompiling packages... 5075.9 ms ✓ ComponentArrays → ComponentArraysZygoteExt 1 dependency successfully precompiled in 6 seconds. 80 already precompiled. Precompiling packages... Info Given QuadGKEnzymeExt was explicitly requested, output will be shown live  ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ For the time being we recommend using 1.11 or LTS (1.10). │ │ For latest updates, check the status of support for Julia 1.12+ at │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ └ @ Enzyme ~/.julia/packages/Enzyme/jaHZG/src/Enzyme.jl:1587 22514.6 ms ✓ QuadGK → QuadGKEnzymeExt 1 dependency successfully precompiled in 23 seconds. 51 already precompiled. 1 dependency had output during precompilation: ┌ QuadGK → QuadGKEnzymeExt │ [Output was shown above] └ Precompiling packages... Info Given EnzymeLogExpFunctionsExt was explicitly requested, output will be shown live  ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ For the time being we recommend using 1.11 or LTS (1.10). │ │ For latest updates, check the status of support for Julia 1.12+ at │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ └ @ Enzyme ~/.julia/packages/Enzyme/jaHZG/src/Enzyme.jl:1587 23898.2 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 1 dependency successfully precompiled in 24 seconds. 51 already precompiled. 1 dependency had output during precompilation: ┌ Enzyme → EnzymeLogExpFunctionsExt │ [Output was shown above] └ Precompiling packages... Info Given EnzymeChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ For the time being we recommend using 1.11 or LTS (1.10). │ │ For latest updates, check the status of support for Julia 1.12+ at │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ └ @ Enzyme ~/.julia/packages/Enzyme/jaHZG/src/Enzyme.jl:1587 25665.6 ms ✓ Enzyme → EnzymeChainRulesCoreExt 1 dependency successfully precompiled in 26 seconds. 53 already precompiled. 1 dependency had output during precompilation: ┌ Enzyme → EnzymeChainRulesCoreExt │ [Output was shown above] └ Precompiling packages... Info Given EnzymeSpecialFunctionsExt was explicitly requested, output will be shown live  ┌ Warning: Enzyme.jl support for Julia 1.12 is presently in progress. │ For the time being we recommend using 1.11 or LTS (1.10). │ │ For latest updates, check the status of support for Julia 1.12+ at │ https://github.com/EnzymeAD/Enzyme.jl/issues/2699. │ └ @ Enzyme ~/.julia/packages/Enzyme/jaHZG/src/Enzyme.jl:1587 25239.2 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 1 dependency successfully precompiled in 26 seconds. 55 already precompiled. 1 dependency had output during precompilation: ┌ Enzyme → EnzymeSpecialFunctionsExt │ [Output was shown above] └ Precompiling packages... 7328.4 ms ✓ HMMTest 1 dependency successfully precompiled in 8 seconds. 78 already precompiled. Unbound or partitioned GlobalRef not allowed in value position Internal error: during type inference of _pullback(Zygote.Context{false}, Main.var"#25#26", ComponentArrays.ComponentArray{Float64, 1, Array{Float64, 1}, Tuple{ComponentArrays.Axis{(init=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=1, stop=2), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()), trans=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=3, stop=6), nothing, ComponentArrays.ShapedAxis{(2, 2)}}(ax=ComponentArrays.ShapedAxis{(2, 2)}()), means=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=7, stop=8), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()))}}}, Array{Float64, 1}, Array{Float64, 1}) Encountered unexpected error in runtime: ErrorException("IR verification failed.\n Code location: /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:137\n Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::var\"#25#26\", ::ComponentVector{Float64, Vector{Float64}, Tuple{Axis{(init = ViewAxis(1:2, Shaped1DAxis((2,))), trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = ViewAxis(7:8, Shaped1DAxis((2,))))}}}, ::Vector{Float64}, ::Vector{Float64})") error at ./error.jl:54 unknown function (ip: 0x7130d9f0d4ea) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f_invokelatest at /source/src/builtins.c:881 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:125 jfptr_raise_error_17104.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:71 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:429 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1043 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002 jfptr_optimize_81947.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202 jfptr_finish_nocycle_81800.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4508 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1254 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1437 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1446 jfptr_typeinf_ext_toplevel_80948.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_type_infer at /source/src/gf.c:462 jl_compile_method_internal at /source/src/gf.c:3512 _jl_invoke at /source/src/gf.c:4002 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 top-level scope at none:6 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7131102f3249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [75] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 unknown function (ip: 0x713110356ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:481 jl_compile_method_internal at /source/src/gf.c:3512 _jl_invoke at /source/src/gf.c:4002 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] jl_f__apply_iterate at /source/src/builtins.c:868 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7131102f3249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 228268675 (Pool: 228266098; Big: 2577); GC: 73 Testing failed after 546.83s ERROR: LoadError: Package HiddenMarkovModels errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 678.81s: an internal error was encountered