Package evaluation to test CrystalNets on Julia 1.12.4 (0f21d93eaa*) started at 2026-01-26T21:56:08.796 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.19s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [7952bbbe] + CrystalNets v1.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.1.0 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.4 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 387341.7 ms ✓ CrystalNets 1 dependency successfully precompiled in 389 seconds. 65 already precompiled. Precompilation completed after 404.72s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_Hnhp5D/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.0 [86223c79] Graphs v1.13.4 [18c5b727] PeriodicGraphs v0.10.4 [90137ffa] StaticArrays v1.9.16 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Hnhp5D/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.0 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.4 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: This CIF file contains multiple colliding atoms. Only one atom will be kept per site. [ Warning: Cu atoms suspiciously close to one another(bond length: 0.5503737600000008). One will be removed. [ Info: Initial pass found N, O and C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for c8ce00653a2: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: Detected 5 structures of dimension 0 in c8ce00653a2, possibly complex solvent residues. They will be ignored for topology computation. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 18m07.1s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 3 3 1.0s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 10m16.2s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 55.1s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.3s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ....... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 27 running 1 of 1 signal (10): User defined signal 1 ..== at ./promotion.jl:637 [inlined] iterate at ./range.jl:921 [inlined] _fill! at ./array.jl:334 [inlined] fill! at ./array.jl:329 [inlined] fill! at ./bitarray.jl:377 falses at ./bitarray.jl:400 [inlined] falses at ./bitarray.jl:398 [inlined] translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:730 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:791 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:34 unknown function (ip: 0x71e71ffbb182) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:87 [inlined] #topological_genome#221 at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 unknown function (ip: 0x71e6feb0c4ac) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 .eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71e75358f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ........ ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./process.jl:685 wait at ./process.jl:686 jfptr_wait_37520.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2553 unknown function (ip: 0x70b3ac17fff3) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2493 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2161 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2275 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x70b3ac17516c) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2222 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212 unknown function (ip: 0x70b3ac16bab1) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2478 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:515 unknown function (ip: 0x70b3ac16b6e1) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x70b3ac1623b0) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x70b3ac16050f) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70b3c81bf249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070b3addfc010 Total snapshots: 320. Utilization: 0% ╎320 @Base/client.jl:550 _start() ╎ 320 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 320 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 320 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pat… ╎ 320 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), mo… ╎ 320 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 320 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 320 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 320 @Pkg/src/API.jl:157 test ╎ ╎ 320 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 320 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 320 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 320 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 320 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 320 @Pkg/…erations.jl:2384 test ╎ ╎ ╎ 320 @Pkg/…erations.jl:2478 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 320 @Pkg/…rations.jl:2212 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 320 @Pkg/…rations.jl:2222 #sandbox#182 ╎ ╎ ╎ ╎ 320 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 320 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 320 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 320 @Pkg/…tions.jl:2275 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 320 @Pkg/…tions.jl:2161 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 320 @Pkg/…tions.jl:2308 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 320 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 320 @Pkg/…ions.jl:2493 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 320 @Pkg/…ons.jl:2553 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 320 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 320 @Base/…ss.jl:685 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 320 @Base/…on.jl:141 wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 320 @Base/…sk.jl:1228 wait() 319╎ ╎ ╎ ╎ ╎ ╎ ╎ 320 @Base/…sk.jl:1216 poptask(W::Base.Intru… ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000071e7391fc010 Total snapshots: 135. Utilization: 100% ╎134 @Base/client.jl:550 _start() ╎ 134 @Base/client.jl:283 exec_options(opts::Base.JLOptions) ╎ 134 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 134 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ 134 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path::St… ╎ 134 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 134 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), m… 1╎ ╎ 134 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 1 @Base/array.jl:800 collect(itr::Base.Generator{UnitRange{Int64}… ╎ ╎ 1 @Base/array.jl:826 collect_to_with_first!(dest::Vector{SVector… ╎ ╎ 1 @Base/array.jl:848 collect_to!(dest::Vector{SVector{2, Int64}… ╎ ╎ ╎ 1 @Base/generator.jl:48 iterate 1╎ ╎ ╎ 1 none:? (::var"#48#49"{Int64})(::Int64) ╎ ╎ 2 @Base/coreio.jl:3 print(x::String) ╎ ╎ 2 @Base/strings/io.jl:248 print(io::Base.PipeEndpoint, s::String) ╎ ╎ 2 @Base/strings/io.jl:246 write ╎ ╎ ╎ 2 @Base/stream.jl:1154 unsafe_write(s::Base.PipeEndpoint, p::P… ╎ ╎ ╎ 2 @Base/stream.jl:1069 uv_write(s::Base.PipeEndpoint, p::Ptr{… 2╎ ╎ ╎ 2 @Base/stream.jl:1114 uv_write_async(s::Base.PipeEndpoint, … ╎ ╎ 128 @CrystalNets/…ery.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 128 @CrystalNets/…ery.jl:90 #topological_genome#221 ╎ ╎ 15 @CrystalNets/…ery.jl:86 topological_genome ╎ ╎ ╎ 15 @CrystalNets/…es.jl:982 UnderlyingNets(g::PeriodicGraph2D, o… ╎ ╎ ╎ 15 @CrystalNets/…es.jl:675 (CrystalNet2D)(cell::PeriodicGraphE… ╎ ╎ ╎ 15 @PeriodicGraphEquilibriumPlacement/…:41 equilibrium(g::Per… ╎ ╎ ╎ 15 @PeriodicGraphEquilibriumPlacement/…:507 dixon_solve(::Va… ╎ ╎ ╎ 2 @PeriodicGraphEquilibriumPlacement/…:485 try_modulo ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:217 rational_lu(A:… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1740 sort!(v::Vector{Int64}; alg::Base.… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort!(v::Vector{Int64}, ::Base.S… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:800 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:844 _sort!(v::Vector{Int64}, ::Ba… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:254 rational_lu(A:… ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1336 sparse(I::Vector{Int64}, J::Vect… ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1332 dimlub ╎ ╎ ╎ ╎ 1 @Base/…ucedim.jl:979 maximum ╎ ╎ ╎ ╎ 1 @Base/…ucedim.jl:979 #maximum#743 ╎ ╎ ╎ ╎ ╎ 1 @Base/…cedim.jl:983 _maximum ╎ ╎ ╎ ╎ ╎ 1 @Base/…cedim.jl:983 #_maximum#745 ╎ ╎ ╎ ╎ ╎ 1 @Base/…edim.jl:984 _maximum ╎ ╎ ╎ ╎ ╎ 1 @Base/…edim.jl:984 #_maximum#746 ╎ ╎ ╎ ╎ ╎ 1 @Base/…edim.jl:326 mapreduce ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…dim.jl:326 #mapreduce#728 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…dim.jl:334 _mapreduce_dim ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ce.jl:436 _mapreduce ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ce.jl:269 mapreduce_impl ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ce.jl:263 mapreduce_impl(f::typeof… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ce.jl:255 mapreduce_impl(f::typeo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…op.jl:76 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…op.jl:54 simd_index ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:3137 getindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ge.jl:952 _getindex ╎ ╎ ╎ 13 @PeriodicGraphEquilibriumPlacement/…:487 try_modulo ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:432 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:309 linsolve!(F::… ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1865 tril! ╎ ╎ ╎ ╎ 1 @SparseArrays/…l:1865 tril! ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1856 fkeep! ╎ ╎ ╎ ╎ ╎ 1 @SparseArrays/…:1797 _fkeep!(f::SparseArrays.var"#… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:986 setindex! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:991 _setindex! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:434 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:894 materialize ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:919 copy ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:947 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:994 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:995 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:616 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:620 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:672 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:699 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:22 Inte… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int32) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ 6 @PeriodicGraphEquilibriumPlacement/…:441 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:902 materialize! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:905 materialize! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:947 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:994 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:995 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:616 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:620 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…cast.jl:672 _broadcast_getindex ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ast.jl:699 _broadcast_getindex_evalf ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:64 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:360 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:404 promote ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:379 _promote ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int64) ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…l:114 * ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…:118 mul ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…:265 mul! ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…:297 mul! ╎ ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…:328 _mul! ╎ ╎ ╎ ╎ ╎ 5 @LinearAlgebra/…:343 generic_matmatmul_wrapper! ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:50 generic_matmatmul! ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:60 spdensemul! ╎ ╎ ╎ ╎ ╎ 5 @SparseArrays/…:91 _spmatmul!(C::Matrix{BigInt… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:564 * ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:563 * ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:201 mul_si(a::BigInt, b::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:69 BigInt 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:70 _ ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:502 + ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/gmp.jl:172 add(a::BigInt, b::BigInt) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:71 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ls.jl:92 finalizer 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:171 add! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:442 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:313 linsolve!(F::… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:295 backward_sub… ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:296 macro expa… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:74 * ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:18 Modulo ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:287 mod 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:88 * ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:444 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @Base/…oadcast.jl:902 materialize! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:905 materialize! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:947 copyto! ╎ ╎ ╎ ╎ 1 @Base/…adcast.jl:994 copyto! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mdloop.jl:77 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…dcast.jl:995 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…onal.jl:745 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:996 setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int32) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ ╎ 3 @PeriodicGraphEquilibriumPlacement/…:455 dixon_p(::Val{… ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:362 _inner_dixon_… ╎ ╎ ╎ ╎ 1 @Base/deepcopy.jl:29 deepcopy ╎ ╎ ╎ ╎ 1 @Base/iddict.jl:49 IdDict ╎ ╎ ╎ ╎ 1 @Base/iddict.jl:31 IdDict 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:370 _inner_dixon_… 1╎ ╎ ╎ ╎ 1 @Base/gmp.jl:228 tdiv_qr! ╎ ╎ ╎ ╎ 1 @PeriodicGraphEquilibriumPlacement/…:404 _inner_dixon_… ╎ ╎ ╎ ╎ 1 @Base/rational.jl:61 divgcd(x::BigInt, y::Int128) ╎ ╎ ╎ ╎ 1 @Base/div.jl:64 div ╎ ╎ ╎ ╎ 1 @Base/div.jl:360 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:404 promote ╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:379 _promote ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:333 BigInt(x::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ ╎ ╎ 113 @CrystalNets/…ery.jl:87 topological_genome ╎ ╎ ╎ 113 @CrystalNets/…ry.jl:153 topological_genome(group::Underlying… ╎ ╎ ╎ 8 @CrystalNets/…ry.jl:22 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 7 @CrystalNets/…y.jl:232 collision_nodes(net::CrystalNet2D{R… ╎ ╎ ╎ 7 @CrystalNets/…y.jl:87 get_CollisionList(g::PeriodicGraph2… ╎ ╎ ╎ 7 @CrystalNets/…y.jl:28 get_CollisionNode(g::PeriodicGraph… ╎ ╎ ╎ ╎ 7 @Base/array.jl:783 collect(itr::Base.Generator{UnitRang… ╎ ╎ ╎ ╎ 7 @PeriodicGraphs/…:148 coordination_sequence(g::Periodi… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:85 _neighborhood(g::PeriodicGraph2D… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1528 sizehint! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1555 sizehint!(a::Vector{Tuple{Perio… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1131 _growend! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1148 (::Base.var"#_growend!##0#_gr… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1067 array_new_memory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ ╎ 3 @PeriodicGraphs/…:89 _neighborhood(g::PeriodicGraph2D… ╎ ╎ ╎ ╎ 3 @PeriodicGraphs/…:39 graph_width!(g::PeriodicGraph2D) ╎ ╎ ╎ ╎ 3 @Graphs/…hall.jl:31 floyd_warshall_shortest_paths ╎ ╎ ╎ ╎ ╎ 2 @Graphs/…hall.jl:63 floyd_warshall_shortest_paths(… ╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:929 getindex 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ials.jl:920 getindex ╎ ╎ ╎ ╎ ╎ 1 @Graphs/…hall.jl:64 floyd_warshall_shortest_paths(… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:929 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:98 _neighborhood(g::PeriodicGraph2D… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:351 outneighbors 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 _neighborhood(g::PeriodicGraph2D… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:133 hash_position ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:99 hash_position ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:681 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:98 axes 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:194 size ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:107 _neighborhood(g::PeriodicGraph2… ╎ ╎ ╎ ╎ 1 @Base/array.jl:1289 push! ╎ ╎ ╎ ╎ 1 @Base/array.jl:1292 _push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1131 _growend! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1152 (::Base.var"#_growend!##0#_gr… ╎ ╎ ╎ ╎ ╎ 1 @Base/…mory.jl:125 unsafe_copyto! 1╎ ╎ ╎ ╎ ╎ 1 @Base/cmem.jl:28 memmove ╎ ╎ ╎ 1 @CrystalNets/…y.jl:236 collision_nodes(net::CrystalNet2D{R… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:120 shrink_collisions(net::CrystalNet2… ╎ ╎ ╎ 1 @PeriodicGraphs/…l:136 PeriodicGraph ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:131 PeriodicGraph2D(nv::Int64, t::Vec… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:60 from_edges(nv::Int64, t::Vector{P… ╎ ╎ ╎ ╎ 1 @Base/array.jl:591 ones ╎ ╎ ╎ ╎ 1 @Base/array.jl:595 ones ╎ ╎ ╎ ╎ 1 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:647 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ 62 @CrystalNets/…ry.jl:34 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 62 @CrystalNets/…n.jl:274 minimize ╎ ╎ ╎ 62 @CrystalNets/…n.jl:287 minimize_unstable ╎ ╎ ╎ 62 @CrystalNets/…n.jl:791 find_first_valid_translation_unst… ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:462 reduce_unstable_net(shrunk_net::C… ╎ ╎ ╎ ╎ 3 @StaticArrays/…jl:11 * ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:130 _mul ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:139 macro expansion ╎ ╎ ╎ ╎ 3 @StaticArrays/…l:188 mul_loop ╎ ╎ ╎ ╎ ╎ 2 @StaticArrays/…:218 macro expansion ╎ ╎ ╎ ╎ ╎ 2 @Base/…otion.jl:434 * ╎ ╎ ╎ ╎ ╎ 2 @Base/…tion.jl:404 promote ╎ ╎ ╎ ╎ ╎ 2 @Base/…tion.jl:379 _promote ╎ ╎ ╎ ╎ ╎ 2 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/mpfr.jl:393 BigFloat(x::Rational{Int32}) ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/mpfr.jl:393 BigFloat ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…fr.jl:395 #BigFloat#14 ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…fr.jl:1210 setprecision ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…fr.jl:1211 setprecision(f::Base.MP… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…fr.jl:396 #17 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:248 setrounding_raw(f::Bas… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:249 setrounding_raw(f::Bas… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:397 (::Base.MPFR.var"#19#… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:153 BigFloat() ╎ ╎ ╎ ╎ ╎ 1 @StaticArrays/…:221 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:410 promote ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:388 _promote ╎ ╎ ╎ ╎ ╎ 1 @Base/…mber.jl:7 convert ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/mpfr.jl:393 BigFloat(x::Rational{Int32}) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/mpfr.jl:393 BigFloat ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:395 #BigFloat#14 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:1210 setprecision ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…fr.jl:1211 setprecision(f::Base.MP… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…es.jl:99 Scope ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…es.jl:93 Scope ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:933 PersistentDict ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ct.jl:869 set(::Type{Base.Pers… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mt.jl:82 HAMT ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mt.jl:77 HAMT ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…mt.jl:71 init_hamt ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:647 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ 7 @CrystalNets/….jl:617 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:569 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/array.jl:2444 findfirst ╎ ╎ ╎ ╎ 1 @Base/array.jl:2393 findnext ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:339 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:591 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1233 iterate ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:1235 iterate ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:339 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex 1╎ ╎ ╎ ╎ 1 @Base/int.jl:87 + ╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:564 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:81 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:569 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:216 view ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:249 unsafe_view ╎ ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:28 SubArray 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:891 ensure_indexable ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:577 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/array.jl:3137 getindex ╎ ╎ ╎ ╎ 1 @Base/range.jl:952 _getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:939 _in_unit_range ╎ ╎ ╎ ╎ ╎ 1 @Base/…ators.jl:425 > 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < 1╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:582 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 41 @CrystalNets/….jl:677 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 10 @Base/task.jl:1082 yield() 1╎ ╎ ╎ ╎ 9 @Base/task.jl:989 enq_work(t::Task) 2╎ ╎ ╎ ╎ 2 @Base/task.jl:898 push!(W::Base.IntrusiveLinkedListS… 4╎ ╎ ╎ ╎ 4 @Base/task.jl:899 push!(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:946 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/task.jl:947 workqueue_for(tid::Int64) 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:11 length ╎ ╎ ╎ ╎ 31 @Base/task.jl:1084 yield() ╎ ╎ ╎ ╎ 6 @Base/task.jl:1228 wait() ╎ ╎ ╎ ╎ 5 @Base/task.jl:1214 poptask(W::Base.IntrusiveLinkedLi… ╎ ╎ ╎ ╎ 5 @Base/task.jl:1196 trypoptask(W::Base.IntrusiveLink… 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:922 popfirst!(W::Base.IntrusiveLinke… 2╎ ╎ ╎ ╎ ╎ 2 @Base/task.jl:924 popfirst!(W::Base.IntrusiveLinke… 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:925 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:927 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:65 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == ╎ ╎ ╎ ╎ 1 @Base/task.jl:1218 poptask(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1091 set_next_task ╎ ╎ ╎ ╎ 1 @Base/task.jl:1229 wait() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1143 try_yieldto(undo::typeof(Base.ens… ╎ ╎ ╎ ╎ 24 @Base/task.jl:1230 wait() 24╎ ╎ ╎ ╎ 24 @Base/libuv.jl:133 process_events ╎ ╎ ╎ ╎ 6 @CrystalNets/….jl:699 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/array.jl:789 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/array.jl:658 _similar_shape ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:53 axes ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:98 axes 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:194 size ╎ ╎ ╎ ╎ 3 @Base/array.jl:795 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 3 @Base/array.jl:670 _array_for_inner ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:866 similar ╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:867 similar ╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:647 Array 2╎ ╎ ╎ ╎ ╎ 2 @Base/boot.jl:588 GenericMemory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 2 @Base/array.jl:800 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 2 @Base/array.jl:826 collect_to_with_first! ╎ ╎ ╎ ╎ 2 @Base/array.jl:848 collect_to! ╎ ╎ ╎ ╎ 2 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 2 @CrystalNets/…l:702 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:83 < ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:707 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 1 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 1 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:800 _sort!(v::Vector{PeriodicVerte… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:845 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ring.jl:120 lt ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:709 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:398 falses ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:400 falses ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:37 BitArray 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:372 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:750 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…sentials.jl:0 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:769 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/…erators.jl:197 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ 43 @CrystalNets/…ry.jl:56 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 43 @CrystalNets/…ry.jl:63 topological_genome(net::CrystalNet2… ╎ ╎ ╎ 41 @CrystalNets/…y.jl:660 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:375 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @Base/array.jl:795 collect(itr::Base.Generator{Vector{U… ╎ ╎ ╎ ╎ 1 @Base/array.jl:670 _array_for_inner ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:866 similar ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:867 similar ╎ ╎ ╎ ╎ 1 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:647 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ 1 @CrystalNets/…y.jl:402 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:137 candidate_key(net::CrystalNet2D{R… 1╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array ╎ ╎ ╎ 25 @CrystalNets/…y.jl:403 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 15 @CrystalNets/….jl:356 candidate_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 15 @StaticArrays/…jl:10 * ╎ ╎ ╎ ╎ 15 @StaticArrays/…jl:89 _mul ╎ ╎ ╎ ╎ 15 @StaticArrays/…l:108 macro expansion ╎ ╎ ╎ ╎ 9 @Base/…motion.jl:485 muladd ╎ ╎ ╎ ╎ ╎ 9 @Base/…otion.jl:631 muladd ╎ ╎ ╎ ╎ ╎ 5 @Base/…ional.jl:408 * ╎ ╎ ╎ ╎ ╎ 5 @Base/…cked.jl:296 checked_mul ╎ ╎ ╎ ╎ ╎ 3 @Base/…cked.jl:267 mul_with_overflow(x::Int128,… ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:338 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:370 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:338 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 2 @Base/…cked.jl:272 mul_with_overflow(x::Int128,… ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:338 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:361 +(x::Rational{Int128}, y::Rat… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 3 @Base/…ional.jl:362 +(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ 3 @Base/…cked.jl:296 checked_mul ╎ ╎ ╎ ╎ ╎ 2 @Base/…cked.jl:267 mul_with_overflow(x::Int128,… ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:338 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 1 @Base/…cked.jl:276 mul_with_overflow(x::Int128,… 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1000 * ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:407 * ╎ ╎ ╎ ╎ ╎ 1 @Base/…tional.jl:61 divgcd(x::Int128, y::Int128) ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:229 div 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1003 div ╎ ╎ ╎ ╎ 5 @Base/…tional.jl:408 * ╎ ╎ ╎ ╎ ╎ 5 @Base/…ecked.jl:296 checked_mul ╎ ╎ ╎ ╎ ╎ 2 @Base/…ecked.jl:267 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:338 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:370 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:338 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 3 @Base/…ecked.jl:272 mul_with_overflow(x::Int128, … ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ 2 @Base/div.jl:338 div 2╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:370 div ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:338 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:358 candidate_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 5 @Base/…oadcast.jl:894 materialize ╎ ╎ ╎ ╎ 5 @StaticArrays/…jl:60 copy ╎ ╎ ╎ ╎ 5 @StaticArrays/…l:119 _broadcast ╎ ╎ ╎ ╎ 5 @StaticArrays/…l:123 __broadcast ╎ ╎ ╎ ╎ ╎ 5 @StaticArrays/…:135 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:0 -(x::Rational{Int128}, y::Ratio… ╎ ╎ ╎ ╎ ╎ 4 @Base/…ional.jl:371 -(x::Rational{Int128}, y::Rat… ╎ ╎ ╎ ╎ ╎ 4 @Base/…cked.jl:296 checked_mul ╎ ╎ ╎ ╎ ╎ 4 @Base/…cked.jl:267 mul_with_overflow(x::Int128,… ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:337 cld ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:380 div ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/div.jl:338 div 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:336 fld ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:370 div ╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/div.jl:338 div 3╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/int.jl:1002 div ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:362 candidate_key_unstable(net::Cryst… ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:32 macro expansion ╎ ╎ ╎ ╎ 5 @Base/set.jl:570 allunique ╎ ╎ ╎ ╎ 5 @Base/set.jl:538 _hashed_allunique(C::Vector{Tuple{I… ╎ ╎ ╎ ╎ 3 @Base/set.jl:131 in! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:268 ht_keyindex2_shorthash!(h::Dict{… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:149 rehash!(h::Dict{Tuple{Int64, In… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:273 ht_keyindex2_shorthash!(h::Dict{… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…piler.jl:54 getproperty 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:0 ht_keyindex2_shorthash!(h::Dict{… ╎ ╎ ╎ ╎ 2 @Base/set.jl:133 in! ╎ ╎ ╎ ╎ ╎ 2 @Base/dict.jl:337 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:158 rehash!(h::Dict{Tuple{Int64, In… 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:168 rehash!(h::Dict{Tuple{Int64, In… ╎ ╎ ╎ ╎ ╎ 1 @Base/dict.jl:128 hashindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…hing.jl:28 hash ╎ ╎ ╎ ╎ ╎ 1 @Base/tuple.jl:580 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ple.jl:580 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ple.jl:580 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:3581 hash ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ing.jl:0 hash(x::Rational{Int128}, … ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:487 == 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == ╎ ╎ ╎ 2 @CrystalNets/…y.jl:407 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 2 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 2 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 2 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 2 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 2 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:1380 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/sort.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1128 _sort!(v::Vector{Tuple{Int… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:506 make_scratch ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:647 Array 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1158 _sort!(v::Vector{Tuple{Int… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1123 _sort! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…rt.jl:1163 _sort!(v::Vector{Tuple{I… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:299 copyto! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:308 _copyto_impl! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ry.jl:125 unsafe_copyto! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…em.jl:28 memmove ╎ ╎ ╎ 1 @CrystalNets/…y.jl:419 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:719 iterate ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:720 iterate(cpci::CrystalNets.Contig… ╎ ╎ ╎ ╎ 1 @Base/array.jl:986 setindex! 1╎ ╎ ╎ ╎ 1 @Base/array.jl:991 _setindex! ╎ ╎ ╎ 4 @CrystalNets/…y.jl:421 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:258 vertex_swap!(edgs::Vector{Tuple{I… 2╎ ╎ ╎ ╎ 2 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:271 vertex_swap!(edgs::Vector{Tuple{I… ╎ ╎ ╎ ╎ 1 @Base/array.jl:986 setindex! 1╎ ╎ ╎ ╎ 1 @Base/array.jl:991 _setindex! 1╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:282 vertex_swap!(edgs::Vector{Tuple{I… ╎ ╎ ╎ 4 @CrystalNets/…y.jl:422 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 4 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 4 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 4 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 4 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ 4 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:802 _sort! ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:731 _sort! ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:780 _sort! ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:1372 _sort!(v::Vector{Tuple{Int6… ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/sort.jl:1450 _issorted ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…ing.jl:118 lt ╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…le.jl:627 isless 1╎ ╎ ╎ ╎ ╎ ╎ 4 @Base/…le.jl:627 isless 1╎ ╎ ╎ ╎ ╎ ╎ 3 @Base/…le.jl:627 isless(t1::Tuple{SVector… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ay.jl:3027 isless ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…ay.jl:3007 cmp 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Base/…rs.jl:477 isless 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…al.jl:425 <(x::Rational{Int128… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:430 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:730 iterate(cpci::CrystalNets.Contigu… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:674 _init_state ╎ ╎ ╎ ╎ 1 @Base/array.jl:591 ones ╎ ╎ ╎ ╎ 1 @Base/array.jl:595 ones ╎ ╎ ╎ ╎ 1 @Base/boot.jl:660 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array ╎ ╎ ╎ 1 @CrystalNets/…y.jl:431 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @Base/task.jl:1082 yield() ╎ ╎ ╎ ╎ 1 @Base/task.jl:989 enq_work(t::Task) 1╎ ╎ ╎ ╎ 1 @Base/task.jl:899 push!(W::Base.IntrusiveLinkedListSy… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:439 topological_key_unstable(net::Cry… ╎ ╎ ╎ ╎ 1 @CrystalNets/…y.jl:42 findbasis(edges::Vector{Tuple{Int… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:88 (::CrystalNets.var"#findbasis##0#… ╎ ╎ ╎ ╎ 1 @StaticArrays/…jl:10 * ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:89 _mul ╎ ╎ ╎ ╎ 1 @StaticArrays/…l:108 macro expansion ╎ ╎ ╎ ╎ ╎ 1 @Base/…ional.jl:411 *(x::Rational{BigInt}, y::Int6… ╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:404 promote ╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:379 _promote ╎ ╎ ╎ ╎ ╎ 1 @Base/number.jl:7 convert ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:316 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:218 set_si(a::Int64) ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:69 BigInt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:70 _ 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/gmp.jl:157 init2! ╎ ╎ ╎ 1 @CrystalNets/…y.jl:661 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:277 find_candidates(net::CrystalNet2D… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:188 partition_by_coordination_sequenc… ╎ ╎ ╎ ╎ 1 @Base/array.jl:800 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/array.jl:826 collect_to_with_first! ╎ ╎ ╎ ╎ 1 @Base/array.jl:848 collect_to! ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 1 none:? #partition_by_coordination_sequence##2 ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:148 coordination_sequence(g::Pe… ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:107 _neighborhood(g::PeriodicG… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1289 push! ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1293 _push! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1010 __safe_setindex! ╎ ╎ ╎ 1 @CrystalNets/…y.jl:669 topological_key(net::CrystalNet2D{… ╎ ╎ ╎ 1 @CrystalNets/…y.jl:112 candidate_key ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:136 candidate_key(net::CrystalNet2D{R… ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:1764 unique ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:1764 #unique#548 ╎ ╎ ╎ ╎ 1 @Base/…sional.jl:1766 _unique_dims ╎ ╎ ╎ ╎ 1 @Base/set.jl:230 unique(itr::Vector{Int64}) ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1289 push! ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1292 _push! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:1131 _growend! ╎ ╎ 1 @Graphs/…perators.jl:714 getindex(g::PeriodicGraph2D, iter::Vec… ╎ ╎ 1 @PeriodicGraphs/….jl:296 induced_subgraph(g::PeriodicGraph2D, … ╎ ╎ 1 @PeriodicGraphs/….jl:280 vertex_permutation(g::PeriodicGraph2… ╎ ╎ ╎ 1 @Base/array.jl:354 copy 1╎ ╎ ╎ 1 @Base/boot.jl:588 GenericMemory ╎ ╎ 1 @PeriodicGraphs/….jl:58 swap_axes!(g::PeriodicGraph2D, t::Vecto… ╎ ╎ 1 @Base/…tractarray.jl:1342 getindex ╎ ╎ 1 @Base/…imensional.jl:956 _getindex ╎ ╎ ╎ 1 @Base/…mensional.jl:968 _unsafe_getindex ╎ ╎ ╎ 1 @Base/…ractarray.jl:822 similar ╎ ╎ ╎ 1 @Base/…actarray.jl:832 similar ╎ ╎ ╎ 1 @Base/boot.jl:660 Array 1╎ ╎ ╎ 1 @Base/boot.jl:648 Array [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_9934.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 23231237 (Pool: 23230617; Big: 620); GC: 21 [27] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/test/runtests.jl:415 SubArray at ./subarray.jl:22 [inlined] SubArray at ./subarray.jl:38 [inlined] SubArray at ./subarray.jl:28 [inlined] unsafe_view at ./subarray.jl:249 [inlined] view at ./subarray.jl:216 [inlined] attribute_next_available_modify! at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:569 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:617 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:791 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:34 unknown function (ip: 0x71e71ffbb182) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:87 [inlined] #topological_genome#221 at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/query.jl:90 unknown function (ip: 0x71e6feb0c4ac) at (unknown file) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_58627.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_39366.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4010 [inlined] ijl_apply_generic at /source/src/gf.c:4210 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71e75358f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1870139147 (Pool: 1870135086; Big: 4061); GC: 584 PkgEval terminated after 2722.58s: test duration exceeded the time limit