Package evaluation of Stheno on Julia 1.12.0-rc2.1 (084dab1917*) started at 2025-09-12T08:22:49.110 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.87s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.79s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 49.8s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_vDchUL/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vDchUL/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.2.0 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 6506.2 ms ✓ Stheno 1 dependency successfully precompiled in 8 seconds. 80 already precompiled. Precompiling packages... 7463.2 ms ✓ Documenter 1 dependency successfully precompiled in 8 seconds. 27 already precompiled. Precompiling packages... 2218.1 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 2 seconds. 18 already precompiled. Precompiling packages... 9405.0 ms ✓ ChainRules 1361.7 ms ✓ StructArrays → StructArraysStaticArraysExt 3505.0 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 7328.9 ms ✓ ForwardDiff 15858.8 ms ✓ GPUArrays 2111.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 67311.0 ms ✓ Zygote 7 dependencies successfully precompiled in 108 seconds. 98 already precompiled. Precompiling packages... 8162.0 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 9 seconds. 109 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#277` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 20m16.1s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1224s / 99.3% 30.9GiB / 99.7% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 806s 66.3% 806s 21.3GiB 69.0% 21.3GiB addition 1 451s 37.1% 451s 12.0GiB 39.0% 12.0GiB Standardised Tests (correlated sum) 1 255s 21.0% 255s 6.47GiB 21.0% 6.47GiB adj_ad 9 38.9s 3.2% 4.32s 1.06GiB 3.5% 121MiB adj_fd 9 10.5s 0.9% 1.17s 347MiB 1.1% 38.5MiB Standardised Tests (independent sum) 1 147s 12.1% 147s 5.23GiB 17.0% 5.23GiB adj_ad 9 27.2s 2.2% 3.02s 1.32GiB 4.3% 150MiB adj_fd 9 12.2s 1.0% 1.36s 334MiB 1.1% 37.1MiB Correlated GPs 1 46.0s 3.8% 46.0s 300MiB 0.9% 300MiB Consistency Tests 1 20.2s 1.7% 20.2s 122MiB 0.4% 122MiB Verify mean / kernel numerically 1 3.29s 0.3% 3.29s 47.0MiB 0.1% 47.0MiB Consistency Tests 1 1.72s 0.1% 1.72s 16.3MiB 0.1% 16.3MiB product 1 166s 13.7% 166s 4.34GiB 14.1% 4.34GiB multiply by function 1 92.2s 7.6% 92.2s 2.32GiB 7.5% 2.32GiB Diff Tests 1 54.8s 4.5% 54.8s 1.73GiB 5.6% 1.73GiB adj_ad 9 21.0s 1.7% 2.34s 945MiB 3.0% 105MiB adj_fd 9 6.72s 0.6% 747ms 126MiB 0.4% 14.0MiB Consistency Tests 1 6.09s 0.5% 6.09s 119MiB 0.4% 119MiB multiply by constant 1 74.0s 6.1% 74.0s 2.02GiB 6.5% 2.02GiB Diff Tests 1 55.9s 4.6% 55.9s 1.96GiB 6.4% 1.96GiB adj_ad 9 17.5s 1.4% 1.95s 872MiB 2.8% 96.9MiB adj_fd 9 12.7s 1.0% 1.41s 328MiB 1.0% 36.4MiB Consistency Tests 1 4.90s 0.4% 4.90s 22.3MiB 0.1% 22.3MiB GP mul errors 1 14.2ms 0.0% 14.2ms 44.4KiB 0.0% 44.4KiB compose 1 93.2s 7.7% 93.2s 2.59GiB 8.4% 2.59GiB general 1 56.6s 4.7% 56.6s 1.66GiB 5.4% 1.66GiB Diff Tests 1 49.9s 4.1% 49.9s 1.60GiB 5.2% 1.60GiB adj_ad 9 16.3s 1.3% 1.82s 803MiB 2.5% 89.2MiB adj_fd 9 6.42s 0.5% 713ms 124MiB 0.4% 13.7MiB Consistency Tests 1 5.16s 0.4% 5.16s 43.5MiB 0.1% 43.5MiB Stretch 1 29.9s 2.5% 29.9s 829MiB 2.6% 829MiB scalar stretch 1 29.0s 2.4% 29.0s 813MiB 2.6% 813MiB scalar input 1 28.0s 2.3% 28.0s 809MiB 2.6% 809MiB adj_fd 9 11.0s 0.9% 1.22s 313MiB 1.0% 34.8MiB adj_ad 9 4.21s 0.3% 468ms 151MiB 0.5% 16.8MiB vector input 1 999ms 0.1% 999ms 3.69MiB 0.0% 3.69MiB Vector stretch 1 824ms 0.1% 824ms 12.7MiB 0.0% 12.7MiB Matrix stretch 1 137ms 0.0% 137ms 3.38MiB 0.0% 3.38MiB Shift 1 3.64s 0.3% 3.64s 45.0MiB 0.1% 45.0MiB Shift{Float64} 1 1.87s 0.2% 1.87s 28.7MiB 0.1% 28.7MiB Shift{Vector{Float64}} 1 1.77s 0.1% 1.77s 16.3MiB 0.1% 16.3MiB Select 1 1.80s 0.1% 1.80s 35.9MiB 0.1% 35.9MiB evaluation 1 816ms 0.1% 816ms 22.9MiB 0.1% 22.9MiB idx isa Vector 1 567ms 0.0% 567ms 8.49MiB 0.0% 8.49MiB idx isa Integer 1 413ms 0.0% 413ms 4.45MiB 0.0% 4.45MiB Periodic 1 1.28s 0.1% 1.28s 37.6MiB 0.1% 37.6MiB cross 1 29.1s 2.4% 29.1s 1.35GiB 4.4% 1.35GiB block arrays 1 16.3s 1.3% 16.3s 881MiB 2.8% 881MiB Stheno._collect ∘ _mortar 1 13.4s 1.1% 13.4s 730MiB 2.3% 730MiB BlockVector 1 7.20s 0.6% 7.20s 326MiB 1.0% 326MiB adj_fd 1 965ms 0.1% 965ms 13.9MiB 0.0% 13.9MiB adj_ad 1 294ms 0.0% 294ms 17.2MiB 0.1% 17.2MiB BlockMatrix 1 6.21s 0.5% 6.21s 404MiB 1.3% 404MiB adj_fd 1 1.14s 0.1% 1.14s 112MiB 0.4% 112MiB adj_ad 1 74.5ms 0.0% 74.5ms 2.67MiB 0.0% 2.67MiB fdm stuff 1 2.86s 0.2% 2.86s 151MiB 0.5% 151MiB Correctness tests 1 8.63s 0.7% 8.63s 441MiB 1.4% 441MiB Standardised Tests 1 4.17s 0.3% 4.17s 60.7MiB 0.2% 60.7MiB gp 1 194s 15.9% 194s 5.11GiB 16.6% 5.11GiB adj_ad 2 22.4s 1.8% 11.2s 0.98GiB 3.2% 502MiB sparse gp 1 21.6s 1.8% 21.6s 412MiB 1.3% 412MiB SparseFiniteGP inference 1 15.8s 1.3% 15.8s 283MiB 0.9% 283MiB SparseFiniteGP methods 1 5.30s 0.4% 5.30s 124MiB 0.4% 124MiB SparseFiniteGP Constructors 1 409ms 0.0% 409ms 4.59MiB 0.0% 4.59MiB gp 1 18.9s 1.6% 18.9s 403MiB 1.3% 403MiB GP 1 18.6s 1.5% 18.6s 399MiB 1.3% 399MiB independent GPs 1 288ms 0.0% 288ms 2.91MiB 0.0% 2.91MiB wrapped AbstractGP 1 14.1ms 0.0% 14.1ms 314KiB 0.0% 314KiB adj_fd 2 3.39s 0.3% 1.69s 45.3MiB 0.1% 22.6MiB derived_gp 1 174μs 0.0% 174μs 1.59KiB 0.0% 1.59KiB gaussian_process_probabilistic_programme 1 149s 12.2% 149s 2.49GiB 8.1% 2.49GiB Zygote 1 29.8s 2.5% 29.8s 1.03GiB 3.3% 1.03GiB nested gppp 1 16.0s 1.3% 16.0s 94.6MiB 0.3% 94.6MiB External Consistency 1 15.6s 1.3% 15.6s 109MiB 0.3% 109MiB split 1 666ms 0.1% 666ms 13.0MiB 0.0% 13.0MiB gppp macro 1 63.3ms 0.0% 63.3ms 627KiB 0.0% 627KiB doctests 1 59.0s 4.9% 59.0s 1.68GiB 5.4% 1.68GiB BlockData 1 8.41s 0.7% 8.41s 287MiB 0.9% 287MiB vcat(::GPPPInput...) 1 2.55s 0.2% 2.55s 110MiB 0.3% 110MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1371.05s PkgEval succeeded after 1451.45s