Package evaluation of OceanTurb on Julia 1.12.0-rc2.1 (084dab1917*) started at 2025-09-12T05:55:26.406 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.44s ################################################################################ # Installation # Installing OceanTurb... Resolving package versions... Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.12/Project.toml` [d848d694] + OceanTurb v0.3.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [8f4d0f93] + Conda v1.10.2 [682c06a0] + JSON v0.21.4 [1914dd2f] + MacroTools v0.5.16 [d848d694] + OceanTurb v0.3.4 [6fe1bfb0] + OffsetArrays v1.17.0 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [438e738f] + PyCall v1.96.4 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [81def892] + VersionParsing v1.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 61.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 18.45s ################################################################################ # Testing # Testing OceanTurb Status `/tmp/jl_heRtHF/Project.toml` [a2441757] Coverage v1.7.0 [d848d694] OceanTurb v0.3.4 [6fe1bfb0] OffsetArrays v1.17.0 [438e738f] PyCall v1.96.4 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_heRtHF/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [d1d4a3ce] BitFlags v0.1.9 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.2 [a2441757] Coverage v1.7.0 [c36e975a] CoverageTools v1.3.2 [460bff9d] ExceptionUnwrapping v0.1.11 [cd3eb016] HTTP v1.10.17 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [d848d694] OceanTurb v0.3.4 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [438e738f] PyCall v1.96.4 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [81def892] VersionParsing v1.3.0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 Testing Running tests... Test Summary: | Pass Total Time Utils | 5 5 4.6s Test Summary: | Pass Total Time Solvers | 2 2 2.3s Test Summary: | Pass Total Time Grids | 18 18 1.3s Test Summary: | Pass Total Time Fields | 24 24 7.0s WARNING: Method definition test_diffusive_flux() in module Main at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_utils.jl:16 overwritten at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_diffusion.jl:17. Test Summary: | Pass Total Time Diffusion | 14 14 4.7s Test Summary: | Pass Total Time Pacanowski-Philander | 2 2 3.0s Test Summary: | Pass Total Time KPP | 51 51 30.3s Test Summary: | Pass Total Time Modular KPP | 17 17 51.0s WARNING: Method definition test_default_model_init() in module Main at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_modularkpp.jl:5 overwritten at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:5. WARNING: Method definition test_default_model_init(Any) in module Main at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_modularkpp.jl:5 overwritten at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:5. WARNING: Method definition test_default_model_init(Any, Any) in module Main at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_modularkpp.jl:5 overwritten at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:5. TKEMassFlux tests begin: testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, Nothing, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::Nothing, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, Nothing, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::Nothing, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, typeof(OceanTurb.TKEMassFlux.prescribed_surface_tke_flux)}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.EquilibriumMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.LMDCounterGradientFlux{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEFlux{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, Nothing, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::Nothing, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK TKEMassFlux: Error During Test at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedNearWallTKE{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK testing... OK testing... OK ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 285 running 1 of 1 signal (10): User defined signal 1 _ZN12_GLOBAL__N_18Verifier16visitInstructionERN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier15visitAllocaInstERN4llvm10AllocaInstE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:848 runOnLoop at /source/src/llvm-julia-licm.cpp:348 run at /source/src/llvm-julia-licm.cpp:373 run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE13runSinglePassIS1_St10unique_ptrINS_6detail11PassConceptIS1_S5_JS4_S7_EEESt14default_deleteISD_EEEESt8optionalINS_17PreservedAnalysesEERT_RT0_RS5_S4_S7_RNS_19PassInstrumentationE.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE24runWithoutLoopNestPassesERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm11PassManagerINS_4LoopENS_15AnalysisManagerIS1_JRNS_27LoopStandardAnalysisResultsEEEEJS4_RNS_10LPMUpdaterEEE3runERS1_RS5_S4_S7_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm25FunctionToLoopPassAdaptor3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3520 _jl_invoke at /source/src/gf.c:3997 [inlined] ijl_apply_generic at /source/src/gf.c:4205 time_step_tke_mass_flux_model at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 unknown function (ip: 0x7f06894d75da) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 macro expansion at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] macro expansion at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] top-level scope at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_invoke at /source/src/gf.c:4012 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_95452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_95452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_94127.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f06d8350249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_80754.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2445 unknown function (ip: 0x70691c9878c3) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #204 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2385 withenv at ./env.jl:265 #189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2204 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2062 #185 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2171 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x70691c97fb8c) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#181 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2118 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2110 unknown function (ip: 0x70691c9736a9) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#192 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2370 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:462 unknown function (ip: 0x70691c972c01) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x70691c971300) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x70691c96819f) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:305 exec_options at ./client.jl:321 _start at ./client.jl:554 jfptr__start_94127.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x706938860249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000070691e5fc010 Total snapshots: 363. Utilization: 0% ╎363 @Base/client.jl:554 _start() ╎ 363 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 363 @Base/Base.jl:305 include(mod::Module, _path::String) ╎ 363 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _pat… ╎ 363 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), mo… ╎ 363 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 363 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 363 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 363 @Pkg/src/API.jl:152 test ╎ ╎ 363 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 363 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 363 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 363 @Pkg/src/API.jl:462 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 363 @Pkg/src/API.jl:483 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 363 @Pkg/…erations.jl:2280 test ╎ ╎ ╎ 363 @Pkg/…erations.jl:2370 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 363 @Pkg/…rations.jl:2110 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 363 @Pkg/…rations.jl:2118 #sandbox#181 ╎ ╎ ╎ ╎ 363 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 363 @Base/file.jl:895 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 363 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 363 @Pkg/…tions.jl:2171 (::Pkg.Operations.var"#185#18… ╎ ╎ ╎ ╎ ╎ 363 @Pkg/…tions.jl:2062 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 363 @Pkg/…tions.jl:2204 (::Pkg.Operations.var"#189#… ╎ ╎ ╎ ╎ ╎ 363 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 363 @Pkg/…ions.jl:2385 (::Pkg.Operations.var"#204… ╎ ╎ ╎ ╎ ╎ ╎ 363 @Pkg/…ons.jl:2445 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…ss.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…ss.jl:694 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…sk.jl:1199 wait() 362╎ ╎ ╎ ╎ ╎ ╎ ╎ 363 @Base/…sk.jl:1187 poptask(W::Base.Intr… TKEMassFlux: Error During Test┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 at Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007f06bdffc010 Total snapshots: 158. Utilization: 100% ╎131 @Base/client.jl:554 _start() ╎ 131 @Base/client.jl:287 exec_options(opts::Base.JLOptions) ╎ 131 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 131 @Base/Base.jl:307 (::Base.IncludeInto)(fname::String) ╎ 131 @Base/Base.jl:306 include(mapexpr::Function, mod::Module, _path::S… ╎ 131 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _p… ╎ ╎ 131 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), … ╎ ╎ 131 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 131 @Base/Base.jl:307 (::Base.IncludeInto)(fname::String) ╎ ╎ 131 @Base/Base.jl:306 include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 131 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Modul… ╎ ╎ ╎ 131 @Base/loading.jl:2843 include_string(mapexpr::typeof(identi… ╎ ╎ ╎ 131 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ 131 @OceanTurb/…lux.jl:61 top-level scope ╎ ╎ ╎ 131 @Test/…rc/Test.jl:1776 macro expansion ╎ ╎ ╎ 131 @OceanTurb/…lux.jl:74 macro expansion ╎ ╎ ╎ ╎ 131 @Test/…rc/Test.jl:677 macro expansion ╎ ╎ ╎ ╎ 131 @OceanTurb/…ux.jl:74 macro expansion 130╎ ╎ ╎ ╎ 131 @OceanTurb/…x.jl:21 time_step_tke_mass_flux_model(bo… /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 Test threw exception Expression: time_step_tke_mass_flux_model(boundary_layer_depth, mixing_length, nonlocal_flux, tke_equation, wall_model, eddy_diffusivity_model) BoundsError: attempt to access 6-element OffsetArray(::Vector{Float64}, 0:5) with eltype Float64 with indices 0:5 at index [6] Stacktrace: [1] throw_boundserror(A::OffsetArrays.OffsetVector{Float64, Vector{Float64}}, I::Tuple{Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] getindex @ ~/.julia/packages/OffsetArrays/b7qpm/src/OffsetArrays.jl:434 [inlined] [4] ∂z @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:361 [inlined] [5] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/KPP.jl:159 [inlined] [6] ∂B∂z @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/TKEMassFlux.jl:29 [inlined] [7] Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:111 [inlined] [8] oncell @ ~/.julia/packages/OceanTurb/wYitF/src/fields.jl:461 [inlined] [9] cell_Richardson_number @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:115 [inlined] [10] Cᴷu @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:121 [inlined] [11] KU @ ~/.julia/packages/OceanTurb/wYitF/src/models/TKEMassFlux/diffusivities.jl:5 [inlined] [12] #update!##0 @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:157 [inlined] [13] macro expansion @ ./ntuple.jl:74 [inlined] [14] ntuple @ ./ntuple.jl:71 [inlined] [15] update!(solution::OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, m::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, eqn::Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, bcs::@NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:151 [16] update! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:162 [inlined] [17] time_step! @ ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:269 [inlined] [18] time_step!(model::OceanTurb.TKEMassFlux.Model{OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}, Nothing, OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, OceanTurb.TKEMassFlux.TKEParameters{Float64}, OceanTurb.ModularKPP.LMDMixingDepth{Float64}, OceanTurb.TKEMassFlux.BackgroundDiffusivities{Float64}, Constants{Float64}, OceanTurb.TKEMassFlux.State{Float64, CellField{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, Nothing, Float64, Nothing}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, BackwardEulerTimestepper{Equation{NTuple{5, typeof(OceanTurb.minuszero)}, @NamedTuple{U::typeof(OceanTurb.minuszero), V::typeof(OceanTurb.minuszero), T::typeof(OceanTurb.minuszero), S::typeof(OceanTurb.minuszero), e::typeof(OceanTurb.TKEMassFlux.Le)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.KU), V::typeof(OceanTurb.TKEMassFlux.KV), T::typeof(OceanTurb.TKEMassFlux.KT), S::typeof(OceanTurb.TKEMassFlux.KS), e::typeof(OceanTurb.TKEMassFlux.Ke)}, @NamedTuple{U::typeof(OceanTurb.TKEMassFlux.RU), V::typeof(OceanTurb.TKEMassFlux.RV), T::typeof(OceanTurb.TKEMassFlux.RT), S::typeof(OceanTurb.TKEMassFlux.RS), e::typeof(OceanTurb.TKEMassFlux.Re)}, typeof(OceanTurb.TKEMassFlux.update_state!)}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, NTuple{5, Tridiagonal{Float64, Vector{Float64}}}}, OceanTurb.TKEMassFlux.Solution{Vector{Float64}, UniformGrid{Float64, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}, Float64}, @NamedTuple{U::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, V::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, T::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, S::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}, e::FieldBoundaryConditions{BoundaryCondition{Gradient, Float64}, BoundaryCondition{Flux, Float64}}}, Float64}, Δt::Float64, Nt::Int64) @ OceanTurb ~/.julia/packages/OceanTurb/wYitF/src/timesteppers.jl:18 [19] time_step_tke_mass_flux_model(boundary_layer_depth::OceanTurb.ModularKPP.LMDMixingDepth{Float64}, mixing_length::OceanTurb.TKEMassFlux.SimpleMixingLength{Float64}, nonlocal_flux::OceanTurb.ModularKPP.SiebesmaDiagnosticPlumeModel{Float64}, tke_equation::OceanTurb.TKEMassFlux.TKEParameters{Float64}, tke_wall_model::OceanTurb.TKEMassFlux.PrescribedSurfaceTKEValue{Float64}, eddy_diffusivities::OceanTurb.TKEMassFlux.RiDependentDiffusivities{Float64}) @ Main ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 [20] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] [22] macro expansion @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [24] top-level scope @ ~/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 testing... OK [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:331 #start_profile_listener##0 at ./Base.jl:351 jfptr_YY.start_profile_listenerYY.YY.0_48888.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 21006245 (Pool: 21005728; Big: 517); GC: 18 [285] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:60 _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:543 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3520 _jl_invoke at /source/src/gf.c:3997 [inlined] ijl_apply_generic at /source/src/gf.c:4205 time_step_tke_mass_flux_model at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:21 unknown function (ip: 0x7f06888519ca) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 macro expansion at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] macro expansion at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:74 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] top-level scope at /home/pkgeval/.julia/packages/OceanTurb/wYitF/test/test_tkemassflux.jl:61 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_invoke at /source/src/gf.c:4012 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_95452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:306 IncludeInto at ./Base.jl:307 jfptr_IncludeInto_95452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:287 _start at ./client.jl:554 jfptr__start_94127.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f06d8350249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1244076454 (Pool: 1244065164; Big: 11290); GC: 573 PkgEval terminated after 2722.59s: test duration exceeded the time limit