Package evaluation of OceanBioME on Julia 1.12.0-rc2.1 (084dab1917*) started at 2025-09-12T15:10:20.797 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.83s ################################################################################ # Installation # Installing OceanBioME... Resolving package versions... Installed GibbsSeaWater ─ v0.1.4 Installed OceanBioME ──── v0.14.5 Updating `~/.julia/environments/v1.12/Project.toml` [a49af516] + OceanBioME v0.14.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [ab4f0b2a] + BFloat16s v0.5.1 [fa961155] + CEnum v0.5.0 [052768ef] + CUDA v5.8.3 [1af6417a] + CUDA_Runtime_Discovery v1.0.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.2 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [21656369] + ExpressionExplorer v1.1.3 [7a1cc6ca] + FFTW v1.9.0 [5789e2e9] + FileIO v1.17.0 [53c48c17] + FixedPointNumbers v0.8.5 [0c68f7d7] + GPUArrays v11.2.5 [46192b85] + GPUArraysCore v0.2.0 [61eb1bfa] + GPUCompiler v1.6.1 [096a3bc2] + GPUToolbox v0.3.0 [9a22fb26] + GibbsSeaWater v0.1.4 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [63c18a36] + KernelAbstractions v0.9.38 [ba0b0d4f] + Krylov v0.10.1 [45d422c2] + KrylovPreconditioners v0.3.6 [929cbde3] + LLVM v9.4.2 [8b046642] + LLVMLoopInfo v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [2679e427] + Metis v1.5.0 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [5da4648a] + NVTX v1.0.1 [a49af516] + OceanBioME v0.14.5 [9e8cae18] + Oceananigans v0.98.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [eebad327] + PkgVersion v0.3.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [94ee1d12] + Quaternions v0.7.6 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [a3311ec8] + ReactantCore v0.1.15 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [6038ab10] + Rotations v1.7.1 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [d496a93d] + SeawaterPolynomials v0.3.10 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.19.1 [e689c965] + Tracy v0.1.6 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [d1e2174e] + CUDA_Compiler_jll v0.2.1+0 [4ee394cb] + CUDA_Driver_jll v13.0.1+0 [76a88914] + CUDA_Runtime_jll v0.19.1+0 [f5851436] + FFTW_jll v3.3.11+0 [6727f6b2] + GibbsSeaWater_jll v3.5.2+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] + LLVMExtra_jll v0.0.37+2 [ad6e5548] + LibTracyClient_jll v0.9.1+6 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.2+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] + XML2_jll v2.13.8+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [1e29f10c] + demumble_jll v1.3.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building GibbsSeaWater → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/f4318e7a751703a5db8b57c112e5cd5c218d296b/build.log` Installation completed after 17.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 108.12s ################################################################################ # Testing # Testing OceanBioME Status `/tmp/jl_oyt3Mc/Project.toml` [79e6a3ab] Adapt v4.3.0 [a9b6321e] Atomix v1.1.2 [052768ef] CUDA v5.8.3 [124859b0] DataDeps v0.7.13 [e30172f5] Documenter v1.14.1 [9a22fb26] GibbsSeaWater v0.1.4 ⌅ [033835bb] JLD2 v0.5.15 [63c18a36] KernelAbstractions v0.9.38 [a49af516] OceanBioME v0.14.5 [9e8cae18] Oceananigans v0.98.1 [6fe1bfb0] OffsetArrays v1.17.0 [f2b01f46] Roots v2.2.10 [d496a93d] SeawaterPolynomials v0.3.10 [10745b16] Statistics v1.11.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_oyt3Mc/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.2 [ab4f0b2a] BFloat16s v0.5.1 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [052768ef] CUDA v5.8.3 [1af6417a] CUDA_Runtime_Discovery v1.0.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.2 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [21656369] ExpressionExplorer v1.1.3 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.6.1 [096a3bc2] GPUToolbox v0.3.0 [9a22fb26] GibbsSeaWater v0.1.4 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ba0b0d4f] Krylov v0.10.1 [45d422c2] KrylovPreconditioners v0.3.6 [929cbde3] LLVM v9.4.2 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.1.0 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [2679e427] Metis v1.5.0 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 [5da4648a] NVTX v1.0.1 [a49af516] OceanBioME v0.14.5 [9e8cae18] Oceananigans v0.98.1 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [94ee1d12] Quaternions v0.7.6 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [a3311ec8] ReactantCore v0.1.15 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [f2b01f46] Roots v2.2.10 [6038ab10] Rotations v1.7.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [d496a93d] SeawaterPolynomials v0.3.10 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 ⌅ [6aa5eb33] TaylorSeries v0.19.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [013be700] UnsafeAtomics v0.3.0 [d1e2174e] CUDA_Compiler_jll v0.2.1+0 [4ee394cb] CUDA_Driver_jll v13.0.1+0 [76a88914] CUDA_Runtime_jll v0.19.1+0 [2e619515] Expat_jll v2.7.1+0 [f5851436] FFTW_jll v3.3.11+0 [6727f6b2] GibbsSeaWater_jll v3.5.2+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.1+0 [e33a78d0] Hwloc_jll v2.12.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] LLVMExtra_jll v0.0.37+2 [ad6e5548] LibTracyClient_jll v0.9.1+6 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] NVTX_jll v3.2.2+0 [fe0851c0] OpenMPI_jll v5.0.8+0 [9bd350c2] OpenSSH_jll v10.0.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.8+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [1e29f10c] demumble_jll v1.3.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/WzSJS/src/Oceananigans.jl:125 Precompiling packages... 79470.9 ms ✓ Documenter 1 dependency successfully precompiled in 80 seconds. 52 already precompiled. [ Info: Initializing simulation... [ Info: ... simulation initialization complete (14.803 seconds) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (14.110 seconds). [ Info: Initializing simulation... [ Info: ... simulation initialization complete (8.954 seconds) [ Info: Executing initial time step... [ Info: Simulation is stopping after running for 0 seconds. [ Info: Model iteration 1 equals or exceeds stop iteration 1. [ Info: ... initial time step complete (1.505 seconds). Test Summary: | Pass Total Time Test negative tracer handeling | 2 2 4m57.6s Test Summary: | Pass Total Time Test sinking velocity setup | 6 6 2.9s ┌ Info: Testing light with LOBSTER in NonhydrostaticModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in NonhydrostaticModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with LOBSTER in HydrostaticFreeSurfaceModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in HydrostaticFreeSurfaceModel on 2×2×2 RectilinearGrid{Float64, Periodic, Periodic, Bounded} on CPU with 2×2×2 halo │ ├── Periodic x ∈ [0.0, 2.0) regularly spaced with Δx=1.0 │ ├── Periodic y ∈ [0.0, 2.0) regularly spaced with Δy=1.0 └ └── Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with LOBSTER in HydrostaticFreeSurfaceModel on 5×5×2 LatitudeLongitudeGrid{Float64, Periodic, Bounded, Bounded} on CPU with 3×3×2 halo and with precomputed metrics │ ├── longitude: Periodic λ ∈ [-180.0, 180.0) regularly spaced with Δλ=72.0 │ ├── latitude: Bounded φ ∈ [-85.0, 85.0] regularly spaced with Δφ=34.0 └ └── z: Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... ┌ Info: Testing light with NutrientPhytoplanktonZooplanktonDetritus in HydrostaticFreeSurfaceModel on 5×5×2 LatitudeLongitudeGrid{Float64, Periodic, Bounded, Bounded} on CPU with 3×3×2 halo and with precomputed metrics │ ├── longitude: Periodic λ ∈ [-180.0, 180.0) regularly spaced with Δλ=72.0 │ ├── latitude: Bounded φ ∈ [-85.0, 85.0] regularly spaced with Δφ=34.0 └ └── z: Bounded z ∈ [-2.0, 0.0] regularly spaced with Δz=1.0... Test Summary: | Pass Total Time Light attenuaiton model | 36 36 25m08.7s Test Summary: | Pass Total Time Testing basic particle property integration | 3 3 58.0s WARNING: Method definition required_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:13 overwritten at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:40. Test Summary: | Pass Total Time Testing particle tracer detection | 2 2 34.2s Test Summary: | Pass Total Time Testing particle lagrangian advection | 2 2 14.1s WARNING: Method definition coupled_tracers(Main.SimpleParticleBiogeochemistry) in module Main at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:14 overwritten at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:80. WARNING: Method definition SimpleParticleBiogeochemistry(Base.Val{:A}, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:42 overwritten at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_particles.jl:82. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in cpu__update_tracer_tendencies!(Any, Base.Val{field_name}, Base.Val{target_name}, Any, Any, Any, Any, Any, Any) where {field_name, target_name} at none Test Summary: | Pass Total Time Testing particle-tracer uptake | 2 2 7.3s Test Summary: | Pass Total Time Testing particle-tracer uptake with scalefactors | 2 2 0.1s [ Info: Testing on CPU with carbonates ❌, oxygen ❌, variable redfield ❌, sinking ❌, open bottom ❌) Test Summary: | Pass Total Time LOBSTER CPU(), false, false, false, false, false | 5 5 1m26.5s [ Info: Testing on CPU with carbonates ✅, oxygen ❌, variable redfield ❌, sinking ❌, open bottom ❌) Test Summary: | Pass Total Time LOBSTER CPU(), true, false, false, false, false | 5 5 1m03.5s [ Info: Testing on CPU with carbonates ❌, oxygen ✅, variable redfield ❌, sinking ❌, open bottom ❌) Test Summary: | Pass Total Time LOBSTER CPU(), false, true, false, false, false | 5 5 1m00.7s [ Info: Testing on CPU with carbonates ✅, oxygen ✅, variable redfield ❌, sinking ❌, open bottom ❌) Test Summary: | Pass Total Time LOBSTER CPU(), true, true, false, false, false | 5 5 1m07.4s [ Info: Testing on CPU with carbonates ❌, oxygen ❌, variable redfield ✅, sinking ❌, open bottom ❌) Test Summary: | Pass Total Time LOBSTER CPU(), false, false, true, false, false | 5 5 1m22.3s [ Info: Testing on CPU with carbonates ✅, oxygen ❌, variable redfield ✅, sinking ❌, open bottom ❌) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 361 running 1 of 1 signal (10): User defined signal 1 getMemoryEffects at /source/usr/include/llvm/Analysis/AliasAnalysis.h:781 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Test Summary: | Pass ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_80754.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2445 unknown function (ip: 0x7301d818db83) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #204 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2385 withenv at ./env.jl:265 #189 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2204 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2062 #185 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2171 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x7301d818be2c) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#181 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2118 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2110 unknown function (ip: 0x7301d817f7a9) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#192 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2370 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:462 unknown function (ip: 0x7301d817f3e1) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x7301d817cbf0) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x7301d817429f) at (unknown file) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:693 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2843 _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 _include at ./loading.jl:2903 include at ./Base.jl:305 exec_options at ./client.jl:321 _start at ./client.jl:554 jfptr__start_94127.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7301f4053249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007301d9dfc010 Total snapshots: 353. Utilization: 0% ╎353 @Base/client.jl:554 _start() ╎ 353 @Base/client.jl:321 exec_options(opts::Base.JLOptions) ╎ 353 @Base/Base.jl:305 include(mod::Module, _path::String) ╎ 353 @Base/loading.jl:2903 _include(mapexpr::Function, mod::Module, _pat… ╎ 353 @Base/loading.jl:2843 include_string(mapexpr::typeof(identity), mo… ╎ 353 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 353 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 353 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 353 @Pkg/src/API.jl:152 test ╎ ╎ 353 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 353 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 353 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 353 @Pkg/src/API.jl:462 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 353 @Pkg/src/API.jl:483 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 353 @Pkg/…erations.jl:2280 test ╎ ╎ ╎ 353 @Pkg/…erations.jl:2370 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 353 @Pkg/…rations.jl:2110 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 353 @Pkg/…rations.jl:2118 #sandbox#181 ╎ ╎ ╎ ╎ 353 @Base/file.jl:895 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 353 @Base/file.jl:895 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 353 @Base/file.jl:899 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 353 @Pkg/…tions.jl:2171 (::Pkg.Operations.var"#185#18… ╎ ╎ ╎ ╎ ╎ 353 @Pkg/…tions.jl:2062 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 353 @Pkg/…tions.jl:2204 (::Pkg.Operations.var"#189#… ╎ ╎ ╎ ╎ ╎ 353 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 353 @Pkg/…ions.jl:2385 (::Pkg.Operations.var"#204… ╎ ╎ ╎ ╎ ╎ ╎ 353 @Pkg/…ons.jl:2445 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…ss.jl:687 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…ss.jl:694 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…sk.jl:1199 wait() 352╎ ╎ ╎ ╎ ╎ ╎ ╎ 353 @Base/…sk.jl:1187 poptask(W::Base.Intr… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:331 #start_profile_listener##0 at ./Base.jl:351 jfptr_YY.start_profile_listenerYY.YY.0_48888.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4005 [inlined] ijl_apply_generic at /source/src/gf.c:4205 jl_apply at /source/src/julia.h:2381 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23759542 (Pool: 23758955; Big: 587); GC: 20 [361] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/OceanBioME/eaEIO/test/test_LOBSTER.jl:120 _ZN4llvm22isMallocOrCallocLikeFnEPKNS_5ValueEPKNS_17TargetLibraryInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) unknown function (ip: 0x7d1a435fb1d7) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 729100175 (Pool: 728099606; Big: 1000569); GC: 469 PkgEval terminated after 2723.74s: test duration exceeded the time limit