Package evaluation of Associations on Julia 1.12.0-rc2.1 (084dab1917*) started at 2025-09-12T12:54:09.107 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.65s ################################################################################ # Installation # Installing Associations... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [614afb3a] + Associations v4.5.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [614afb3a] + Associations v4.5.0 [13072b0f] + AxisAlgorithms v1.1.0 [0e736298] + Bessels v0.2.8 [49dc2e85] + Calculus v0.5.2 [d360d2e6] + ChainRulesCore v1.26.0 [35d6a980] + ColorSchemes v3.30.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.0 [ab4b797d] + ComplexityMeasures v3.8.3 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [717857b8] + DSP v0.8.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [5732040d] + DelayEmbeddings v2.9.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [7a1cc6ca] + FFTW v1.9.0 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [fc60dff9] + LombScargle v1.0.3 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [eff96d63] + Measurements v2.14.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [645ca80c] + Neighborhood v0.2.4 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [f27b6e38] + Polynomials v4.1.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [639c3291] + RecurrenceAnalysis v2.1.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.10 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [40b095a5] + StateSpaceSets v2.5.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [62fd8b95] + TensorCore v0.1.1 [c804724b] + TimeseriesSurrogates v2.7.3 [b8865327] + UnicodePlots v3.8.1 [29a6e085] + Wavelets v0.10.1 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+1 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 489.17s ################################################################################ # Testing # Testing Associations Status `/tmp/jl_cbwUT1/Project.toml` [614afb3a] Associations v4.5.0 ⌃ [8e462317] CausalInference v0.18.0 [861a8166] Combinatorics v1.0.3 [ab4b797d] ComplexityMeasures v3.8.3 [5732040d] DelayEmbeddings v2.9.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [6e36e845] DynamicalSystemsBase v3.15.0 [86223c79] Graphs v1.13.1 [09f84164] HypothesisTests v0.11.5 [645ca80c] Neighborhood v0.2.4 [860ef19b] StableRNGs v1.0.3 [40b095a5] StateSpaceSets v2.5.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [c804724b] TimeseriesSurrogates v2.7.3 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cbwUT1/Manifest.toml` [47edcb42] ADTypes v1.17.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [614afb3a] Associations v4.5.0 [13072b0f] AxisAlgorithms v1.1.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [0e736298] Bessels v0.2.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [49dc2e85] Calculus v0.5.2 ⌃ [8e462317] CausalInference v0.18.0 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [35d6a980] ColorSchemes v3.30.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.0 [ab4b797d] ComplexityMeasures v3.8.3 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.8.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.189.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [6e36e845] DynamicalSystemsBase v3.15.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.13 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.9.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.3 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.2.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.2 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [8ac3fa9e] LRUCache v1.6.2 [10f19ff3] LayoutPointers v0.1.17 [70f5e60a] LinkedLists v0.1.1 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 [fc60dff9] LombScargle v1.0.3 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [299715c1] MarchingCubes v0.1.11 [eff96d63] Measurements v2.14.0 [6fafb56a] Memoization v0.2.2 [626554b9] MetaGraphs v0.8.1 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.22 [645ca80c] Neighborhood v0.2.4 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [bbf590c4] OrdinaryDiffEqCore v1.34.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [90014a1f] PDMats v0.11.35 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.1.0 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [639c3291] RecurrenceAnalysis v2.1.2 [731186ca] RecursiveArrayTools v3.37.1 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.10 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.117.1 [c0aeaf25] SciMLOperators v1.7.1 [53ae85a6] SciMLStructures v1.7.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 [40b095a5] StateSpaceSets v2.5.2 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [7792a7ef] StrideArraysCore v0.5.8 [2efcf032] SymbolicIndexingInterface v0.3.43 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3eeacb1d] TabularDisplay v1.3.0 [62fd8b95] TensorCore v0.1.1 [8290d209] ThreadingUtilities v0.5.5 [ac1d9e8a] ThreadsX v0.1.12 [c804724b] TimeseriesSurrogates v2.7.3 [28d57a85] Transducers v0.4.85 [781d530d] TruncatedStacktraces v1.4.0 [b8865327] UnicodePlots v3.8.1 [29a6e085] Wavelets v0.10.1 [efce3f68] WoodburyMatrices v1.0.0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.1+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+1 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 4150.8 ms ✓ RecursiveArrayTools 7843.5 ms ✓ ForwardDiff 3554.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 1779.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 36022.6 ms ✓ SciMLBase 2230.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1309.9 ms ✓ FastPower → FastPowerForwardDiffExt 1633.3 ms ✓ Roots → RootsForwardDiffExt 1396.1 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1780.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 4206.4 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 7926.1 ms ✓ DiffEqBase 4642.2 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 4549.4 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 11458.6 ms ✓ OrdinaryDiffEqCore 4365.5 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 17197.2 ms ✓ OrdinaryDiffEqTsit5 8944.9 ms ✓ DynamicalSystemsBase 18 dependencies successfully precompiled in 127 seconds. 120 already precompiled. Precompiling packages... 1219.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt 1 dependency successfully precompiled in 1 seconds. 34 already precompiled. Precompiling packages... 1599.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 6644.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 1 dependency successfully precompiled in 9 seconds. 90 already precompiled. Precompiling packages... 4387.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1 dependency successfully precompiled in 7 seconds. 58 already precompiled. Precompiling packages... 3461.8 ms ✓ SciMLBase → SciMLBaseMeasurementsExt 1 dependency successfully precompiled in 4 seconds. 57 already precompiled. Precompiling packages... 4377.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 1 dependency successfully precompiled in 5 seconds. 88 already precompiled. Precompiling packages... 4115.9 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 1 dependency successfully precompiled in 5 seconds. 90 already precompiled. ┌ Warning: Convenience function `jdd` is deprecated. Use `association(JointDistanceDistribution(; kwargs...), x, y)` instead. └ @ Associations ~/.julia/packages/Associations/3t8S5/src/deprecations/v3/joint_distance_distribution.jl:13 ┌ Warning: jdd(::OneSampleTTest, x, y; kwargs...) is deprecated. Instead, do `measure = JointDistanceDistribution(); independence(JointDistanceDistributionTest(measure), x, y)`. └ @ Associations ~/.julia/packages/Associations/3t8S5/src/deprecations/v3/joint_distance_distribution.jl:29 ┌ Warning: Assignment to `n` in soft scope is ambiguous because a global variable by the same name exists: `n` will be treated as a new local. Disambiguate by using `local n` to suppress this warning or `global n` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/3t8S5/test/methods/correlation/azadkia_chatterjee_coefficient.jl:21 ┌ Warning: Assignment to `y` in soft scope is ambiguous because a global variable by the same name exists: `y` will be treated as a new local. Disambiguate by using `local y` to suppress this warning or `global y` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/3t8S5/test/methods/correlation/azadkia_chatterjee_coefficient.jl:23 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/ThvQJ/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/ThvQJ/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/ThvQJ/src/deprecations.jl:97 ┌ Warning: Assignment to `c` in soft scope is ambiguous because a global variable by the same name exists: `c` will be treated as a new local. Disambiguate by using `local c` to suppress this warning or `global c` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/3t8S5/test/methods/information/core/counts.jl:16 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/ThvQJ/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/ThvQJ/src/deprecations.jl:97 Recurrence: Error During Test at /home/pkgeval/.julia/packages/Associations/3t8S5/test/methods/recurrence/MCR.jl:25 Test threw exception Expression: pvalue(independence(test, X, Y)) >= α MethodError: no method matching StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}(::Vector{SVector{2, Float64}}) The type `StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/U3PvS/src/statespaceset_concrete.jl:67 Stacktrace: [1] (::TimeseriesSurrogates.SurrogateGenerator{RandomShuffle, StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}, Vector{SVector{2, Float64}}, @NamedTuple{permutation::Vector{Int64}}, Xoshiro})() @ Associations ~/.julia/packages/Associations/3t8S5/src/utils/multidimensional_surrogates.jl:22 [2] independence(test::SurrogateAssociationTest{MCR{Float64, Euclidean}, Xoshiro, RandomShuffle}, x::StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}, args::StateSpaceSet{3, Float64, SVector{3, Float64}, Nothing}) @ Associations ~/.julia/packages/Associations/3t8S5/src/independence_tests/surrogate/SurrogateAssociationTest.jl:147 [3] top-level scope @ ~/.julia/packages/Associations/3t8S5/test/methods/recurrence/MCR.jl:516 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] Recurrence: Error During Test at /home/pkgeval/.julia/packages/Associations/3t8S5/test/methods/recurrence/RMCD.jl:35 Test threw exception Expression: pvalue(independence(test, X, Y)) >= α MethodError: no method matching StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}(::Vector{SVector{2, Float64}}) The type `StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/U3PvS/src/statespaceset_concrete.jl:67 Stacktrace: [1] (::TimeseriesSurrogates.SurrogateGenerator{RandomShuffle, StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}, Vector{SVector{2, Float64}}, @NamedTuple{permutation::Vector{Int64}}, StableRNGs.LehmerRNG})() @ Associations ~/.julia/packages/Associations/3t8S5/src/utils/multidimensional_surrogates.jl:22 [2] independence(test::SurrogateAssociationTest{RMCD{Float64, Euclidean, Int64}, StableRNGs.LehmerRNG, RandomShuffle}, x::StateSpaceSet{2, Float64, SVector{2, Float64}, Nothing}, args::StateSpaceSet{3, Float64, SVector{3, Float64}, Nothing}) @ Associations ~/.julia/packages/Associations/3t8S5/src/independence_tests/surrogate/SurrogateAssociationTest.jl:147 [3] top-level scope @ ~/.julia/packages/Associations/3t8S5/test/methods/recurrence/RMCD.jl:516 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] ┌ Warning: Did not encounter a minimum, returning last `τ`. └ @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/separated_de/estimate_delay.jl:82 Independence: Error During Test at /home/pkgeval/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:91 Test threw exception Expression: independence(surrtest_ord, X, Y, Z) isa SurrogateAssociationTestResult MethodError: no method matching StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}(::Vector{SVector{1, Float64}}) The type `StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/U3PvS/src/statespaceset_concrete.jl:67 Stacktrace: [1] (::TimeseriesSurrogates.SurrogateGenerator{RandomShuffle, StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, Vector{SVector{1, Float64}}, @NamedTuple{permutation::Vector{Int64}}, MersenneTwister})() @ Associations ~/.julia/packages/Associations/3t8S5/src/utils/multidimensional_surrogates.jl:22 [2] independence(::SurrogateAssociationTest{JointProbabilities{PartialMutualInformation, CodifyVariables{1, OrdinalPatterns{3, typeof(ComplexityMeasures.isless_rand), Int64}}, RelativeAmount}, MersenneTwister, RandomShuffle}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}) @ Associations ~/.julia/packages/Associations/3t8S5/src/independence_tests/surrogate/SurrogateAssociationTest.jl:147 [3] top-level scope @ ~/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:516 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] Independence: Error During Test at /home/pkgeval/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:92 Test threw exception Expression: independence(surrtest_disp, X, Y, Z) isa SurrogateAssociationTestResult MethodError: no method matching StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}(::Vector{SVector{1, Float64}}) The type `StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/U3PvS/src/statespaceset_concrete.jl:67 Stacktrace: [1] (::TimeseriesSurrogates.SurrogateGenerator{RandomShuffle, StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, Vector{SVector{1, Float64}}, @NamedTuple{permutation::Vector{Int64}}, MersenneTwister})() @ Associations ~/.julia/packages/Associations/3t8S5/src/utils/multidimensional_surrogates.jl:22 [2] independence(::SurrogateAssociationTest{JointProbabilities{PartialMutualInformation, CodifyVariables{1, Dispersion{GaussianCDFEncoding}}, RelativeAmount}, MersenneTwister, RandomShuffle}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}) @ Associations ~/.julia/packages/Associations/3t8S5/src/independence_tests/surrogate/SurrogateAssociationTest.jl:147 [3] top-level scope @ ~/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:516 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] Independence: Error During Test at /home/pkgeval/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:93 Test threw exception Expression: independence(surrtest_bin, X, Y, Z) isa SurrogateAssociationTestResult MethodError: no method matching StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}(::Vector{SVector{1, Float64}}) The type `StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StateSpaceSet{D, T, V, N}(::Any, !Matched::Any) where {D, T, V, N} @ StateSpaceSets ~/.julia/packages/StateSpaceSets/U3PvS/src/statespaceset_concrete.jl:67 Stacktrace: [1] (::TimeseriesSurrogates.SurrogateGenerator{RandomShuffle, StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, Vector{SVector{1, Float64}}, @NamedTuple{permutation::Vector{Int64}}, MersenneTwister})() @ Associations ~/.julia/packages/Associations/3t8S5/src/utils/multidimensional_surrogates.jl:22 [2] independence(::SurrogateAssociationTest{JointProbabilities{PartialMutualInformation, CodifyVariables{1, ValueBinning{RectangularBinning{Int64}}}, RelativeAmount}, MersenneTwister, RandomShuffle}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}, ::StateSpaceSet{1, Float64, SVector{1, Float64}, Nothing}) @ Associations ~/.julia/packages/Associations/3t8S5/src/independence_tests/surrogate/SurrogateAssociationTest.jl:147 [3] top-level scope @ ~/.julia/packages/Associations/3t8S5/test/independence/SurrogateAssociationTest/pmi.jl:516 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:677 [inlined] Inferring parents using optimal causation entropy (OCE) Notation: a ⫫ b | c := `a` is conditionally independent of `b`, given `c` a !⫫ b | c := `a` is conditionally dependent of `b`, given `c` * xᵢ(τ) := target variable at lag τ * pⱼ(τ) := candidate variable at lag τ * 𝒫ᵢ(τ) := parent set of xᵢ(τ) Inferring parents for x1(0) ˧ Querying pairwise associations... x₁(0) !⫫ x₁(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₁(0) ⫫ x₁(-2) | {x₁(-1)} x₁(0) ⫫ x₂(-1) | {x₁(-1)} x₁(0) ⫫ x₂(-2) | {x₁(-1)} x₁(0) ⫫ x₃(-1) | {x₁(-1)} x₁(0) ⫫ x₃(-2) | {x₁(-1)} x₁(0) ⫫ x₄(-1) | {x₁(-1)} x₁(0) ⫫ x₄(-2) | {x₁(-1)} Inferring parents for x2(0) ˧ Querying pairwise associations... x₂(0) !⫫ x₁(-2) | ∅ ˧ Querying new variables conditioned on already selected variables... x₂(0) !⫫ x₂(-1) | {x₁(-2)} x₂(0) ⫫ x₁(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₂(-2) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₃(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₃(-2) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₄(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₄(-2) | {x₁(-2), x₂(-1)} ˧ Backwards elimination... Before elimination, parents of x₂(0) are 𝒫₂(0) = {x₁(-2), x₂(-1)} Commencing with backward elimination... x₂(0) ⫫ x₁(-2) | {x₂(-1)} → Keeping x₁(-2) in parent set x₂(0) ⫫ x₂(-1) | {x₁(-2)} → Keeping x₂(-1) in parent set After elimination, parents of x₂(0) are 𝒫₂(0) = {x₁(-2), x₂(-1)} Inferring parents for x3(0) ˧ Querying pairwise associations... x₃(0) !⫫ x₃(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₃(0) ⫫ x₁(-1) | {x₃(-1)} x₃(0) ⫫ x₁(-2) | {x₃(-1)} x₃(0) ⫫ x₂(-1) | {x₃(-1)} x₃(0) ⫫ x₂(-2) | {x₃(-1)} x₃(0) ⫫ x₃(-2) | {x₃(-1)} x₃(0) ⫫ x₄(-1) | {x₃(-1)} x₃(0) ⫫ x₄(-2) | {x₃(-1)} Inferring parents for x4(0) ˧ Querying pairwise associations... x₄(0) !⫫ x₄(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₄(0) ⫫ x₁(-1) | {x₄(-1)} x₄(0) ⫫ x₁(-2) | {x₄(-1)} x₄(0) ⫫ x₂(-1) | {x₄(-1)} x₄(0) ⫫ x₂(-2) | {x₄(-1)} x₄(0) ⫫ x₃(-1) | {x₄(-1)} x₄(0) ⫫ x₃(-2) | {x₄(-1)} x₄(0) ⫫ x₄(-2) | {x₄(-1)} x₁(0) ← {x₁(-1)}x₂(0) ← {x₁(-1)}Precompiling packages... 1230.6 ms ✓ BangBang → BangBangTablesExt 1753.7 ms ✓ BangBang → BangBangStaticArraysExt 52048.7 ms ✓ JLD2 7550.1 ms ✓ Transducers 9142.9 ms ✓ MetaGraphs 2443.4 ms ✓ Transducers → TransducersReferenceablesExt 2420.4 ms ✓ Transducers → TransducersAdaptExt 5231.8 ms ✓ ThreadsX 38115.9 ms ✓ CausalInference 9 dependencies successfully precompiled in 123 seconds. 129 already precompiled. WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. Precompiling packages... 4710.1 ms ✓ BangBang → BangBangChainRulesCoreExt 1 dependency successfully precompiled in 5 seconds. 19 already precompiled. Precompiling packages... 1302.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1 dependency successfully precompiled in 2 seconds. 37 already precompiled. Precompiling packages... 2281.2 ms ✓ LogarithmicNumbers → LogarithmicNumbersForwardDiffExt 1 dependency successfully precompiled in 3 seconds. 21 already precompiled. Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 4 and Edge 4 => 1 (p = 0.18636079041680942) Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 5 and Edge 5 => 1 (p = 0.948753842549287) Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 3 and Edge 3 => 2 (p = 0.7237613298100423) Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 5 and Edge 5 => 2 (p = 0.7226954522836686) Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 2 and Edge 2 => 3 (p = 0.7237613298100423) Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 5 and Edge 5 => 3 (p = 0.06959590969265217) Skeleton (conditional, level 𝓁=1): Removing Edge 4 => 1 and Edge 1 => 4 (p = 0.18636079041720977) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 1 and Edge 1 => 5 (p = 0.948753842549287) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 2 and Edge 2 => 5 (p = 0.7226954522836713) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 3 and Edge 3 => 5 (p = 0.06959590969265306) Orienting v-structures... (Rule 0) Oriented 2 ↔ 4 ↔ 3 as 2 → 4 ← 3 Applying rules sequentially ... (#1) (Rule 1) Oriented 2 → 4 ↔ 5 as 2 → 4 → 5 Applying rules sequentially ... (#2) No edge was redirected in this iteration. Stopping. Finished orientiation! Test Summary: | Pass Error Total Time Associations.jl | 755 5 760 16m41.7s Deprecations | 0 0.0s Methods | 548 2 550 7m28.5s Closeness | 42 42 32.2s Ccm like | 56 56 18.2s Correlation | 42 42 34.5s Information | 373 373 4m23.4s Recurrence | 29 2 31 1m39.9s Deprecations | 6 6 0.1s Independence | 130 3 133 1m22.7s LocalPermutationTest with TEShannon + dedicated TE estimator Lindner | 5 5 8.3s LocalPermutationTest with TEShannon + dedicated TE estimator Zhu1 | 5 5 4.4s LocalPermutationTest with TEShannon + non-dedicated estimator FPVP | 1 1 0.0s LocalPermutationTest with TEShannon + non-dedicated estimator GaussianCMI | 1 1 0.2s LocalPermutationTest with TEShannon + non-dedicated estimator EntropyDecomposition | 1 1 0.2s LocalPermutationTest with TEShannon + non-dedicated estimator EntropyDecomposition | 1 1 0.3s Causal graphs | 77 77 5m04.8s RNG of the outermost testset: Xoshiro(0x71ae6db6e9db2cc1, 0xfcf567e9990f11cb, 0x8c7f0bce45d48c59, 0xd10b3ff5db7edd12, 0xde58a03412a72b5d) ERROR: LoadError: Some tests did not pass: 755 passed, 0 failed, 5 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Associations/3t8S5/test/runtests.jl:6 Testing failed after 1023.19s ERROR: LoadError: Package Associations errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2427 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2280 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:483 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:305 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:321 [12] _start() @ Base ./client.jl:554 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1575.66s: package tests unexpectedly errored