Package evaluation to test PartiallyObservedMarkovProcesses on Julia 1.14.0-DEV.3155 (07edee4e4c*) started at 2026-09-11T02:25:44.492 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 14.53s ################################################################################ # Installation # Installing PartiallyObservedMarkovProcesses... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [32433216] + PartiallyObservedMarkovProcesses v0.8.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [14f7f29c] + AMD v0.5.4 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.30.1 [b2a6c25c] + BinaryHeaps v1.1.0 [70df07ce] + BracketingNonlinearSolve v1.12.6 [38540f10] + CommonSolve v0.2.14 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.8 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v7.21.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.21 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.21 [e2ba6199] + ExprTools v0.1.11 [7034ab61] + FastBroadcast v1.4.0 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.5.0 [1a297f60] + FillArrays v1.17.0 [64ca27bc] + FindFirstFunctions v3.2.1 [6a86dc24] + FiniteDiff v2.33.0 [f6369f11] + ForwardDiff v1.4.5 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.13.0 [46192b85] + GPUArraysCore v0.2.0 [a0844989] + Gamma v1.2.0 [34004b35] + HypergeometricFunctions v0.3.30 ⌅ [842dd82b] + InlineStrings v1.4.6 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ba0b0d4f] + Krylov v0.10.9 [2faa5264] + LHLFactorization v2.2.2 [b964fa9f] + LaTeXStrings v1.4.1 [87fe0de2] + LineSearch v0.1.16 [7ed4a6bd] + LinearSolve v5.17.0 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [bb5d69b7] + MaybeInplace v0.1.8 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.7 [77ba4419] + NaNMath v1.1.4 [8913a72c] + NonlinearSolve v4.29.2 [be0214bd] + NonlinearSolveBase v2.49.4 [5959db7a] + NonlinearSolveFirstOrder v2.5.1 [9a2c21bd] + NonlinearSolveQuasiNewton v1.15.3 [26075421] + NonlinearSolveSpectralMethods v1.8.2 [bac558e1] + OrderedCollections v2.0.1 [1dea7af3] + OrdinaryDiffEq v7.8.1 [6ad6398a] + OrdinaryDiffEqBDF v2.4.6 [bbf590c4] + OrdinaryDiffEqCore v4.17.0 [50262376] + OrdinaryDiffEqDefault v2.6.0 [4302a76b] + OrdinaryDiffEqDifferentiation v3.11.5 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v2.9.5 [43230ef6] + OrdinaryDiffEqRosenbrock v2.7.1 [b4bd8bb3] + OrdinaryDiffEqRosenbrockTableaus v2.4.2 [2d112036] + OrdinaryDiffEqSDIRK v2.9.2 [b1df2697] + OrdinaryDiffEqTsit5 v2.1.4 [79d7bb75] + OrdinaryDiffEqVerner v2.4.1 [90014a1f] + PDMats v0.11.41 [32433216] + PartiallyObservedMarkovProcesses v0.8.0 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v1.7.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [43287f4e] + PtrArrays v1.4.0 [0c0d3e7f] + PureKLU v1.4.1 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.5.1 [189a3867] + Reexport v1.2.2 [9fe22ead] + RespecializeParams v1.3.0 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.8 [7e49a35a] + RuntimeGeneratedFunctions v0.5.26 [0bca4576] + SciMLBase v3.53.1 [19f34311] + SciMLJacobianOperators v0.1.19 [a6db7da4] + SciMLLogging v2.1.0 [c0aeaf25] + SciMLOperators v1.30.0 [431bcebd] + SciMLPublic v1.3.0 [53ae85a6] + SciMLStructures v1.10.5 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.14.2 [a2af1166] + SortingAlgorithms v1.2.3 [a57abbd0] + SparseColumnPivotedQR v2.1.8 [0a514795] + SparseMatrixColorings v0.4.28 [276daf66] + SpecialFunctions v2.9.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 ⌅ [892a3eda] + StringManipulation v0.5.0 [2efcf032] + SymbolicIndexingInterface v0.3.55 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [a759f4b9] + TimerOutputs v1.2.1 [781d530d] + TruncatedStacktraces v1.4.0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.22.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.8+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.48.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 15.8 s ✓ SciMLBase → SciMLBaseRCallExt 32.2 s ✓ PartiallyObservedMarkovProcesses 2 dependencies successfully precompiled in 50 seconds. 241 already precompiled. Precompilation completed after 121.19s ################################################################################ # Testing # Testing PartiallyObservedMarkovProcesses Status `/tmp/jl_yCIJoJ/Project.toml` [6e4b80f9] BenchmarkTools v1.8.0 [a8cc5b0e] Crayons v4.2.0 [a93c6f00] DataFrames v1.8.2 [31c24e10] Distributions v0.25.131 [1dea7af3] OrdinaryDiffEq v7.8.1 [1344f307] OrdinaryDiffEqLowOrderRK v2.2.5 [32433216] PartiallyObservedMarkovProcesses v0.8.0 [6f49c342] RCall v0.14.13 [10745b16] Statistics v1.11.5 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_yCIJoJ/Manifest.toml` [47edcb42] ADTypes v1.24.0 [14f7f29c] AMD v0.5.4 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.30.1 [6e4b80f9] BenchmarkTools v1.8.0 [b2a6c25c] BinaryHeaps v1.1.0 [70df07ce] BracketingNonlinearSolve v1.12.6 [324d7699] CategoricalArrays v1.1.1 [38540f10] CommonSolve v0.2.14 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat 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v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: testing constructors and workhorses [ Info: testing error capture [ Info: testing val_array [ Info: testing helper functions [ Info: testing Euler-multinomial facilities [ Info: testing reproducibility functions [ Info: testing `melt` methods ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{RCall.LangSxp}, env::Ptr{RCall.EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{RCall.LangSxp}, env::Ptr{RCall.EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 [ Info: Gompertz model tests ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 Gompertz model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/gompertz.jl:10 Got exception outside of a @test REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/gompertz.jl:12 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [7] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/gompertz.jl:54 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/fTLHT/src/macros.jl:71 [inlined] [ Info: Brownian motion tests Brownian motion: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/brown.jl:12 Got exception outside of a @test REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/brown.jl:14 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [7] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/brown.jl:37 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/fTLHT/src/macros.jl:71 [inlined] [ Info: SIR model tests [ Info: SIR parameters: (γ = 0.25, ρ = 0.3, k = 10, β = 0.5, N = 10000, S0 = 0.9, I0 = 0.01, R0 = 0.1) [ Info: - tests with R pomp SIR model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/sir.jl:11 Got exception outside of a @test REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/sir.jl:13 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [7] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/sir.jl:20 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/fTLHT/src/macros.jl:71 [inlined] [ Info: stochastic Rosenzweig-MacArthur model tests [ Info: - POMP.jl simulations (stoch Rosenzweig-MacArthur) 14.414 ms (509165 allocations: 24.98 MiB) stochastic Rosenzweig-MacArthur model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/rmca.jl:11 Got exception outside of a @test REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/rmca.jl:13 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [7] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/rmca.jl:20 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/fTLHT/src/macros.jl:71 [inlined] [ Info: deterministic Rosenzweig-MacArthur model tests [ Info: - POMP.jl simulations (det Rosenzweig-MacArthur) 19.252 ms (66519 allocations: 2.29 MiB) deterministic Rosenzweig-MacArthur model: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/drmca.jl:11 Got exception outside of a @test REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/drmca.jl:13 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [7] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/drmca.jl:21 [inlined] [8] macro expansion @ ~/.julia/packages/RCall/fTLHT/src/macros.jl:71 [inlined] [ Info: vectorfield integration tests [ Info: trajectory matching tests [ Info: pfilter tests 17.491 ms (117775 allocations: 2.94 MiB) 16.647 ms (117695 allocations: 2.94 MiB) [ Info: speed trials [ Info: - speed tests in R POMP.jl: Error During Test at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/runtests.jl:8 Got exception outside of a @test LoadError: REvalError: Error in library(tidyverse, warn.conflicts = FALSE) : there is no package called ‘tidyverse’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/fTLHT/src/io.jl:168 [2] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:111 [3] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:127 [4] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:145 [5] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/speed1.jl:71 [6] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [7] top-level scope @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/runtests.jl:9 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [9] macro expansion @ ~/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/runtests.jl:24 [inlined] in expression starting at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/speed1.jl:15 Test Summary: | Pass Error Total Time POMP.jl | 226 6 232 5m30.7s constructor and workhorses | 62 62 12.6s error messages | 16 16 16.6s val_array | 4 4 0.8s helpers | 22 22 4.6s eulermultinomial | 13 13 2.9s reproducibility | 27 27 5.6s melt methods | 14 14 6.6s Gompertz model | 14 1 15 20.2s Brownian motion | 5 1 6 30.4s SIR model | 1 1 0.4s stochastic Rosenzweig-MacArthur model | 1 1 2 20.2s deterministic Rosenzweig-MacArthur model | 2 1 3 1m17.9s vectorfield integration | 3 3 24.0s trajectory matching | 21 21 37.2s pfilter | 22 22 43.2s RNG of the outermost testset: Xoshiro(0x6bf3d77a14228bb0, 0x247db4b189a14977, 0x1d3d2f6c2336df48, 0x14c5fef3fdd9159d, 0xfd08db5752085bc8) ERROR: LoadError: Some tests did not pass: 226 passed, 0 failed, 6 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PartiallyObservedMarkovProcesses/4OhN9/test/runtests.jl:8 Testing failed after 380.24s ERROR: LoadError: Package PartiallyObservedMarkovProcesses errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 584.94s: package tests unexpectedly errored