Package evaluation to test MIToS on Julia 1.14.0-DEV.3155 (07edee4e4c*) started at 2026-09-10T21:01:47.503 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.26s ################################################################################ # Installation # Installing MIToS... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [51bafb47] + MIToS v3.10.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [15f4f7f2] + AutoHashEquals v2.2.0 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.8.1 [3c28c6f8] + BioSymbols v5.2.0 [944b1d66] + CodecZlib v0.7.9 [861a8166] + Combinatorics v1.1.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [a0c94c4b] + FastaIO v1.1.0 [1fa38f19] + Format v1.3.7 ⌅ [92fee26a] + GZip v0.6.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.8.0 [9c8b4983] + LightXML v0.9.3 [2ab3a3ac] + LogExpFunctions v1.0.1 [51bafb47] + MIToS v3.10.0 [e1d29d7a] + Missings v1.2.0 [86f7a689] + NamedArrays v0.10.5 ⌅ [bac558e1] + OrderedCollections v1.8.2 [f9da4da7] + PairwiseListMatrices v0.11.1 [69de0a69] + Parsers v3.0.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] + Requires v1.3.1 [a2af1166] + SortingAlgorithms v1.2.3 [90137ffa] + StaticArrays v1.9.20 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [ec057cc2] + StructUtils v2.8.5 [3bb67fe8] + TranscodingStreams v0.11.3 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.15.3+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.22.0+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 3.8 s ✓ PairwiseListMatrices 7.6 s ✓ BioStructures → BioStructuresDataFramesExt 10.7 s ✓ ROCAnalysis ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] NamedArrays.NamedMatrix{Float64, Matrix{Float64}, Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}}(array::Matrix{Float64}, dicts::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined] [3] NamedArrays.NamedArray(array::Matrix{Float64}, names::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:235 [6] MIToS.Information.ContingencyTable(::Core.TypeEgal{Float64}, ::Core.TypeEgal{Val{2}}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [10] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [12] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base Base.jl:334 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/MIToS.jl:1 in expression starting at stdin:5 ✗ MIToS ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2694 [inlined] [3] top-level scope @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSROCAnalysisExt.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSROCAnalysisExt.jl:1 in expression starting at stdin:5 ✗ MIToS → MIToSROCAnalysisExt ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2694 [inlined] [3] top-level scope @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSBioAlignmentsExt.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSBioAlignmentsExt.jl:1 in expression starting at stdin:5 ✗ MIToS → MIToSBioAlignmentsExt ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] require(into::Module, mod::Symbol) @ Base loading.jl:2694 [inlined] [3] top-level scope @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSClusteringExt.jl:3 [4] include(mod::Module, _path::String) @ Base Base.jl:334 [5] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSClusteringExt.jl:1 in expression starting at stdin:5 ✗ MIToS → MIToSClusteringExt 3 dependencies successfully precompiled in 48 seconds. 154 already precompiled. 4 dependencies had output during precompilation: ┌ MIToS → MIToSClusteringExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2694 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSClusteringExt.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSClusteringExt.jl:1 │ in expression starting at stdin:5 └ ┌ MIToS │ ERROR: LoadError: Inconsistent dictionary sizes │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] NamedArrays.NamedMatrix{Float64, Matrix{Float64}, Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}}(array::Matrix{Float64}, dicts::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) │ @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined] │ [3] NamedArrays.NamedArray(array::Matrix{Float64}, names::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) │ @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined] │ [4] macro expansion │ @ ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:249 [inlined] │ [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) │ @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:235 │ [6] MIToS.Information.ContingencyTable(::Core.TypeEgal{Float64}, ::Core.TypeEgal{Val{2}}, alphabet::MIToS.MSA.UngappedAlphabet) │ @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:260 [inlined] │ [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) │ @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:266 │ [8] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 │ [9] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [10] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:113 │ [11] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [12] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/src/MIToS.jl:7 │ [13] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [14] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/MIToS.jl:1 │ in expression starting at stdin:5 └ ┌ MIToS → MIToSROCAnalysisExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2694 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSROCAnalysisExt.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSROCAnalysisExt.jl:1 │ in expression starting at stdin:5 └ ┌ MIToS → MIToSBioAlignmentsExt │ ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("51bafb47-8a16-5ded-8b04-24ef4eede0b5"), "MIToS") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) │ Stacktrace: │ [1] error(s::String) │ @ Base error.jl:56 │ [2] require(into::Module, mod::Symbol) │ @ Base loading.jl:2694 [inlined] │ [3] top-level scope │ @ ~/.julia/packages/MIToS/lpqRN/ext/MIToSBioAlignmentsExt.jl:3 │ [4] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [5] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/ext/MIToSBioAlignmentsExt.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 4 packages failed to precompile: MIToS → MIToSClusteringExt Failed to precompile MIToSClusteringExt [d725e4d4-aeb1-519d-8c97-86b98df66814] to "/home/pkgeval/.julia/compiled/v1.14/MIToSClusteringExt/jl_ti8t1H" (ProcessExited(1)). MIToS Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.14/MIToS/jl_pBzxqj" (ProcessExited(1)). MIToS → MIToSROCAnalysisExt Failed to precompile MIToSROCAnalysisExt [619dd929-3c83-5fe7-9c41-283373c5e1d0] to "/home/pkgeval/.julia/compiled/v1.14/MIToSROCAnalysisExt/jl_UfYgZq" (ProcessExited(1)). MIToS → MIToSBioAlignmentsExt Failed to precompile MIToSBioAlignmentsExt [6dc09393-f02a-5740-afee-9c0548f3b788] to "/home/pkgeval/.julia/compiled/v1.14/MIToSBioAlignmentsExt/jl_I5QoX7" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 73.02s ################################################################################ # Testing # Testing MIToS Status `/tmp/jl_zwFgJh/Project.toml` [4c88cf16] Aqua v0.8.16 [15f4f7f2] AutoHashEquals v2.2.0 [00701ae9] BioAlignments v3.1.0 [de9282ab] BioStructures v4.8.1 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.9 [8bb1440f] DelimitedFiles v1.9.1 [e30172f5] Documenter v1.19.0 [a0c94c4b] FastaIO v1.1.0 [1fa38f19] Format v1.3.7 [682c06a0] JSON v1.8.0 [9c8b4983] LightXML v0.9.3 [51bafb47] MIToS v3.10.0 [86f7a689] NamedArrays v0.10.5 ⌅ [bac558e1] OrderedCollections v1.8.2 [f9da4da7] PairwiseListMatrices v0.11.1 [f535d66d] ROCAnalysis v0.3.6 [3cdcf5f2] RecipesBase v1.3.4 [90137ffa] StaticArrays v1.9.20 [10745b16] Statistics v1.11.5 [2913bbd2] StatsBase v0.34.13 [3bb67fe8] TranscodingStreams v0.11.3 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zwFgJh/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [15f4f7f2] AutoHashEquals v2.2.0 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.2 [de9282ab] BioStructures v4.8.1 [3c28c6f8] BioSymbols v5.2.0 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.9 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.19.0 [a0c94c4b] FastaIO v1.1.0 [1a297f60] FillArrays v1.17.0 [1fa38f19] Format v1.3.7 ⌅ [92fee26a] GZip v0.6.2 [a0844989] Gamma v1.2.0 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.30 [b5f81e59] IOCapture v1.0.0 ⌅ [842dd82b] InlineStrings v1.4.6 [524e6230] IntervalTrees v1.1.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.8.0 [b964fa9f] LaTeXStrings v1.4.1 [0e77f7df] LazilyInitializedFields v1.3.0 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v1.0.1 [51bafb47] MIToS v3.10.0 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [e1d29d7a] Missings v1.2.0 [86f7a689] NamedArrays v0.10.5 [b8a86587] NearestNeighbors v0.4.29 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.41 [f9da4da7] PairwiseListMatrices v0.11.1 [69de0a69] Parsers v3.0.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [f535d66d] ROCAnalysis v0.3.6 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.8 [91c51154] SentinelArrays v1.4.10 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [90137ffa] StaticArrays v1.9.20 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.5 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 ⌅ [892a3eda] StringManipulation v0.5.0 [ec057cc2] StructUtils v2.8.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [2e619515] Expat_jll v2.8.4+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.55.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.5.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [02c8fc9c] XML2_jll v2.15.3+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base error.jl:56 [2] NamedArrays.NamedMatrix{Float64, Matrix{Float64}, Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}}(array::Matrix{Float64}, dicts::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined] [3] NamedArrays.NamedArray(array::Matrix{Float64}, names::Tuple{OrderedCollections.OrderedDict{String, Int64}, OrderedCollections.OrderedDict{String, Int64}}, dimnames::Tuple{String, String}) @ NamedArrays ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:235 [6] MIToS.Information.ContingencyTable(::Core.TypeEgal{Float64}, ::Core.TypeEgal{Val{2}}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/lpqRN/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [10] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [12] top-level scope @ ~/.julia/packages/MIToS/lpqRN/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base Base.jl:334 [14] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/src/MIToS.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MIToS │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: MIToS Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.14/MIToS/jl_r1Q8Di" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/test/tests.jl:3 in expression starting at /home/pkgeval/.julia/packages/MIToS/lpqRN/test/runtests.jl:3 Testing failed after 32.29s ERROR: LoadError: Package MIToS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 155.43s: package fails to precompile