Package evaluation to test DePPA on Julia 1.14.0-DEV.3155 (07edee4e4c*) started at 2026-09-10T14:11:19.074 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.89s ################################################################################ # Installation # Installing DePPA... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [47e0b4c3] + DePPA v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47e0b4c3] + DePPA v0.2.0 [a0c94c4b] + FastaIO v1.1.0 ⌅ [92fee26a] + GZip v0.6.2 [92933f4c] + ProgressMeter v1.11.0 [10745b16] + Statistics v1.11.5 [56f22d72] + Artifacts v1.11.0 [8ba89e20] + Distributed v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 8.4 s ✓ DePPA 2.0 s ✓ MAFFT_jll 3.7 s ✓ NCBIBlast WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `WorldView` not defined in `JET` Suggestion: this global was defined as `Compiler.WorldView` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [3] top-level scope @ ~/.julia/packages/JET/vOTu0/src/JETBase.jl:342 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [5] top-level scope @ ~/.julia/packages/JET/vOTu0/src/JET.jl:92 [6] include(mod::Module, _path::String) @ Base Base.jl:334 [7] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JETBase.jl:342 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JET.jl:1 in expression starting at stdin:5 ✗ JET 2.1 s ✓ DePPA → SeqFoldExt 2.6 s ✓ DePPA → MAFFTExt 5.5 s ✓ DePPA → BLASTExt 6 dependencies successfully precompiled in 41 seconds. 84 already precompiled. 1 dependency had output during precompilation: ┌ JET │ WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. │ WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. │ ERROR: LoadError: UndefVarError: `WorldView` not defined in `JET` │ Suggestion: this global was defined as `Compiler.WorldView` but not assigned a value. │ Stacktrace: │ [1] top-level scope │ @ ~/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 │ [2] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [3] top-level scope │ @ ~/.julia/packages/JET/vOTu0/src/JETBase.jl:342 │ [4] include(mapexpr::Function, mod::Module, _path::String) │ @ Base Base.jl:335 │ [5] top-level scope │ @ ~/.julia/packages/JET/vOTu0/src/JET.jl:92 │ [6] include(mod::Module, _path::String) │ @ Base Base.jl:334 │ [7] top-level scope │ @ stdin:5 │ in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 │ in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JETBase.jl:342 │ in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JET.jl:1 │ in expression starting at stdin:5 └ ERROR: LoadError: The following 1 package failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.14/JET/jl_IA9bMU" (ProcessExited(1)). in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 66.33s ################################################################################ # Testing # Testing DePPA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_tmCFKO/Project.toml` [336ed68f] ↑ CSV v0.10.16 ⇒ v0.10.17 [47e0b4c3] + DePPA v0.2.0 ⌃ [dcaf3faf] ↓ NCBIBlast v0.3.0 ⇒ v0.2.0 Updating `/tmp/jl_tmCFKO/Manifest.toml` [336ed68f] ↑ CSV v0.10.16 ⇒ v0.10.17 [47e0b4c3] + DePPA v0.2.0 [a0c94c4b] + FastaIO v1.1.0 ⌅ [92fee26a] + GZip v0.6.2 ⌅ [842dd82b] ↑ InlineStrings v1.4.5 ⇒ v1.4.6 [b964fa9f] ↑ LaTeXStrings v1.4.0 ⇒ v1.4.1 ⌃ [dcaf3faf] ↓ NCBIBlast v0.3.0 ⇒ v0.2.0 ⌅ [69de0a69] ↑ Parsers v2.8.7 ⇒ v2.8.8 [08abe8d2] ↑ PrettyTables v3.4.6 ⇒ v3.4.8 [92933f4c] + ProgressMeter v1.11.0 [295af30f] ↑ Revise v3.16.3 ⇒ v3.17.0 [10745b16] ↑ Statistics v1.11.1 ⇒ v1.11.5 ⌅ [892a3eda] ↑ StringManipulation v0.4.7 ⇒ v0.5.0 [bd369af6] ↑ Tables v1.13.0 ⇒ v1.14.0 [0dad84c5] ↑ ArgTools v1.1.2 ⇒ v1.2.0 [8ba89e20] + Distributed v1.12.0 [ac6e5ff7] ↑ JuliaSyntaxHighlighting v1.12.0 ⇒ v1.13.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [37e2e46d] ↑ LinearAlgebra v1.12.0 ⇒ v1.14.0 [44cfe95a] ↑ Pkg v1.12.1 ⇒ v1.14.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.13.0 [f489334b] ↑ StyledStrings v1.11.0 ⇒ v1.13.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.3.1+2 ⇒ v1.5.7+0 [deac9b47] ↑ LibCURL_jll v8.15.0+0 ⇒ v8.22.0+0 [e37daf67] ↑ LibGit2_jll v1.9.0+0 ⇒ v1.9.7+0 [29816b5a] ↑ LibSSH2_jll v1.11.3+1 ⇒ v1.11.104+0 [14a3606d] ↑ MozillaCACerts_jll v2025.11.4 ⇒ v2026.8.13 [4536629a] ↑ OpenBLAS_jll v0.3.29+0 ⇒ v0.3.34+0 [458c3c95] ↑ OpenSSL_jll v3.5.6+0 ⇒ v3.5.8+0 [efcefdf7] + PCRE2_jll v10.48.0+0 [83775a58] ↑ Zlib_jll v1.3.1+2 ⇒ v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] ↑ nghttp2_jll v1.64.0+1 ⇒ v1.70.0+0 [3f19e933] ↑ p7zip_jll v17.7.0+0 ⇒ v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_tmCFKO/Project.toml` [4c88cf16] Aqua v0.8.16 [336ed68f] CSV v0.10.17 [a93c6f00] DataFrames v1.8.2 [47e0b4c3] DePPA v0.2.0 [c3a54625] JET v0.12.1 ⌃ [dcaf3faf] NCBIBlast v0.2.0 [b3b2a78d] SeqFold v0.4.0 [72a4bdf2] MAFFT_jll v7.525.0+0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_tmCFKO/Manifest.toml` [4c88cf16] Aqua v0.8.16 [336ed68f] CSV v0.10.17 [da1fd8a2] CodeTracking v3.0.2 [944b1d66] CodecZlib v0.7.9 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [47e0b4c3] DePPA v0.2.0 [a0c94c4b] FastaIO v1.1.0 [48062228] FilePathsBase v0.9.24 ⌅ [92fee26a] GZip v0.6.2 ⌅ [842dd82b] InlineStrings v1.4.6 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.12.1 [692b3bcd] JLLWrappers v1.8.0 [aa1ae85d] JuliaInterpreter v0.11.4 [70703baa] JuliaSyntax v1.0.2 [b964fa9f] LaTeXStrings v1.4.1 [6f1432cf] LoweredCodeUtils v3.8.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌃ [dcaf3faf] NCBIBlast v0.2.0 [bac558e1] OrderedCollections v2.0.1 ⌅ [69de0a69] Parsers v2.8.8 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [92933f4c] ProgressMeter v1.11.0 [189a3867] Reexport v1.2.2 [295af30f] Revise v3.17.0 [91c51154] SentinelArrays v1.4.10 [b3b2a78d] SeqFold v0.4.0 [a2af1166] SortingAlgorithms v1.2.3 [10745b16] Statistics v1.11.5 ⌅ [892a3eda] StringManipulation v0.5.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [72a4bdf2] MAFFT_jll v7.525.0+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Imported binding Compiler.ConstCallInfo was undeclared at import time during import to JET. WARNING: Imported binding Compiler.WorldView was undeclared at import time during import to JET. ERROR: LoadError: UndefVarError: `WorldView` not defined in `JET` Suggestion: this global was defined as `Compiler.WorldView` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [3] top-level scope @ ~/.julia/packages/JET/vOTu0/src/JETBase.jl:342 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base Base.jl:335 [5] top-level scope @ ~/.julia/packages/JET/vOTu0/src/JET.jl:92 [6] include(mod::Module, _path::String) @ Base Base.jl:334 [7] top-level scope @ stdin:5 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/abstractinterpret/typeinfer.jl:252 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JETBase.jl:342 in expression starting at /home/pkgeval/.julia/packages/JET/vOTu0/src/JET.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ JET │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: JET Failed to precompile JET [c3a54625-cd67-489e-a8e7-0a5a0ff4e31b] to "/home/pkgeval/.julia/compiled/v1.14/JET/jl_hmMLfw" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/DePPA/Ei8AR/test/runtests.jl:3 Testing failed after 29.51s ERROR: LoadError: Package DePPA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 151.52s: package fails to precompile