Package evaluation to test StructuralIdentifiability on Julia 1.14.0-DEV.3141 (fbd24f51d0*) started at 2026-09-08T20:04:21.199 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 16.44s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [220ca800] + StructuralIdentifiability v0.5.31 Updating `~/.julia/environments/v1.14/Manifest.toml` [c3fe647b] + AbstractAlgebra v0.50.2 [a9b6321e] + Atomix v1.1.3 [c3b6d118] + BitIntegers v0.3.7 [861a8166] + Combinatorics v1.1.0 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [e2ba6199] + ExprTools v0.1.11 [0b43b601] + Groebner v0.10.7 [18e54dd8] + IntegerMathUtils v0.1.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [b964fa9f] + LaTeXStrings v1.4.1 [1914dd2f] + MacroTools v0.5.16 [2edaba10] + Nemo v0.56.1 [bac558e1] + OrderedCollections v2.0.1 [3e851597] + ParamPunPam v0.5.8 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [73480bc8] + RationalFunctionFields v0.3.5 [189a3867] + Reexport v1.2.2 [2b935e18] + SmallCollections v0.6.3 ⌅ [892a3eda] + StringManipulation v0.5.0 [220ca800] + StructuralIdentifiability v0.5.31 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [a759f4b9] + TimerOutputs v1.2.1 [013be700] + UnsafeAtomics v0.3.2 [e134572f] + FLINT_jll v301.600.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.34+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [781609d7] + GMP_jll v6.3.0+5 [3a97d323] + MPFR_jll v4.2.2+1 [4536629a] + OpenBLAS_jll v0.3.34+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 133.2 s ✓ Groebner 20.1 s ✓ ParamPunPam 19.9 s ✓ RationalFunctionFields 22.0 s ✓ StructuralIdentifiability 4 dependencies successfully precompiled in 196 seconds. 90 already precompiled. Precompilation completed after 208.42s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_uStSoV/Project.toml` [c3fe647b] AbstractAlgebra v0.50.2 [4c88cf16] Aqua v0.8.16 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.1.0 [864edb3b] DataStructures v0.19.6 [0b43b601] Groebner v0.10.7 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.56.1 [3e851597] ParamPunPam v0.5.8 [aea7be01] PrecompileTools v1.3.4 [27ebfcd6] Primes v0.5.7 [73480bc8] RationalFunctionFields v0.3.5 [1bc83da4] SafeTestsets v0.1.0 [09d9d899] SciMLTesting v2.13.1 [276daf66] SpecialFunctions v2.9.0 [220ca800] StructuralIdentifiability v0.5.31 [98d24dd4] TestSetExtensions v4.0.3 [a759f4b9] TimerOutputs v1.2.1 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_uStSoV/Manifest.toml` [c3fe647b] AbstractAlgebra v0.50.2 [4c88cf16] Aqua v0.8.16 [a9b6321e] Atomix v1.1.3 [c3b6d118] BitIntegers v0.3.7 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.1.0 [f70d9fcc] CommonWorldInvalidations v1.2.2 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [7d51a73a] ExplicitImports v1.15.0 [e2ba6199] ExprTools v0.1.11 [0b43b601] Groebner v0.10.7 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.4 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [b964fa9f] LaTeXStrings v1.4.1 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.56.1 [bac558e1] OrderedCollections v2.0.1 [3e851597] ParamPunPam v0.5.8 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [73480bc8] RationalFunctionFields v0.3.5 [189a3867] Reexport v1.2.2 [1bc83da4] SafeTestsets v0.1.0 [431bcebd] SciMLPublic v1.3.0 [09d9d899] SciMLTesting v2.13.1 [2b935e18] SmallCollections v0.6.3 [276daf66] SpecialFunctions v2.9.0 [aedffcd0] Static v1.4.6 ⌅ [892a3eda] StringManipulation v0.5.0 [220ca800] StructuralIdentifiability v0.5.31 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [98d24dd4] TestSetExtensions v4.0.3 [a759f4b9] TimerOutputs v1.2.1 [013be700] UnsafeAtomics v0.3.2 [e134572f] FLINT_jll v301.600.0+0 [656ef2d0] OpenBLAS32_jll v0.3.34+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [781609d7] GMP_jll v6.3.0+5 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [3a97d323] MPFR_jll v4.2.2+1 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a, b, c, d [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y, y2 [ Info: Summary of the model: [ Info: State variables: x0, x1, x2, x3 [ Info: Parameters: a1, a2, b1, b2, ka, kc, n [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, E, A, I, J, C, Ninv [ Info: Parameters: alpha, b, g1, g2, k, q, r [ Info: Inputs: [ Info: Outputs: y, y2 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y1, y2, y3, y4, y5 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y0, y1, y2, y3, y4 [ Info: Summary of the model: [ Info: State variables: KS00, KS01, KS10, FS01, FS10, FS11, K, F, S00, S01, S10, S11 [ Info: Parameters: a00, a01, a10, alpha01, alpha10, alpha11, b00, b01, b10, beta01, beta10, beta11, c0001, c0010, c0011, c0111, c1011, gamma0100, gamma1000, gamma1100, gamma1101, gamma1110 [ Info: Inputs: [ Info: Outputs: y0, y1, y2, y3, y4, y5 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x, y, v, w, z [ Info: Parameters: a, b, beta, c, d, h, k, lm, q, u [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: s, i, r, x1, x2 [ Info: Parameters: M, b0, b1, g, mu, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6 [ Info: Parameters: k1, k2, k3, k4, k5, k6 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y, z, w [ Info: Parameters: a, b, c, d, e, f [ Info: Inputs: [ Info: Outputs: g [ Info: Summary of the model: [ Info: State variables: S, L, In, Q [ Info: Parameters: Ninv, a, b, e, g, s [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, R, W [ Info: Parameters: Dd, T, a, d, dr, e, g, r, rR [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: P0, P1, P2, P3, P4, P5 [ Info: Parameters: Ks, M, Mar, alpa, beta, beta_SA, beta_SI, phi, siga1, siga2 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: EGFR, pEGFR, pEGFR_Akt, Akt, pAkt, S6, pAkt_S6, pS6, EGF_EGFR [ Info: Parameters: EGFR_turnover, a1, a2, a3, reaction_1_k1, reaction_1_k2, reaction_2_k1, reaction_2_k2, reaction_3_k1, reaction_4_k1, reaction_5_k1, reaction_5_k2, reaction_6_k1, reaction_7_k1, reaction_8_k1, reaction_9_k1 [ Info: Inputs: pro_EGFR [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: p1, p2, p3, p4 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: k01, k12, k13, k14, k21, k31, k41 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: b, c, d, k1, k2, q1, q2, s, w1, w2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x4, x5, x6, x7 [ Info: Parameters: k10, k5, k6, k7, k8, k9 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, In, Tr, N [ Info: Parameters: a, b, d, g, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I, R, Q [ Info: Parameters: beta, gamma, psi, v [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10 [ Info: Parameters: t1, t10, t11, t12, t13, t14, t15, t16, t17, t18, t19, t2, t20, t21, t22, t3, t4, t5, t6, t7, t8, t9 [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6, y7, y8 [ Info: Summary of the model: [ Info: State variables: A, S, I, R [ Info: Parameters: K, c, gamma, mu, phi [ Info: Inputs: u1 [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I, R, C, D [ Info: Parameters: N, beta, mu, pp, q, r [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, I, J, R, U [ Info: Parameters: alpha, beta, eta, xi [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: S, I [ Info: Parameters: K, N, beta, gamma [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: A, S, E, I [ Info: Parameters: K, N, beta, epsilon, gamma, mu, r [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, E, I, De, Di, F [ Info: Parameters: N, beta, beta_d, gamma, gamma_d, mu_0, mu_d, mu_i, nu, phi, phi_e, s, s_d [ Info: Inputs: q [ Info: Outputs: y1, y2, y5, y3, y4, y6 [ Info: Summary of the model: [ Info: State variables: x, y, z, w, v [ Info: Parameters: b1, b2, b3, b4, b5, d1, k2, k3, k4, k5, m1, m3, m4, mu2, mu3, mu4, mu5, r1, r2, r3, r4 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: T, L, N, C, I, M [ Info: Parameters: KC, KL, KN, KT, a, alpha1, alpha2, b, beta, c1, f, g, gI, gamma, gt, h, m, muI, p, pI, pt, q, r2, ucte, w [ Info: Inputs: u1, D, u2 [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: S, E, In, Cu [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I [ Info: Parameters: N, alpha, beta, lambda [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, U, I [ Info: Parameters: N, beta, d, w, z [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: beta, cry, zea, beta10, OHbeta10, betaio, OHbetaio [ Info: Parameters: kOHbeta10, kbeta, kbeta10, kcryOH, kcrybeta, kzea [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: mRNA, GFP, enz, mRNAenz [ Info: Parameters: b, d1, d2, d3, kTL [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: p1, p10, p11, p12, p13, p14, p15, p16, p17, p18, p20, p21, p22, p23, p24, p25, p3, p4, p5, p6, p7, p8, p9 [ Info: Inputs: u1 [ Info: Outputs: y1, y2, y3, y4 [ Info: Summary of the model: [ Info: State variables: N, E, S, M, P [ Info: Parameters: delta_EL, delta_LM, delta_NE, mu_EE, mu_LE, mu_LL, mu_M, mu_N, mu_P, mu_PE, mu_PL, rho_E, rho_P [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10, x11, x12, x13, x14, x15, x16, x17, x18, x19, x20 [ Info: Parameters: km, p1, p10, p11, p12, p13, p14, p15, p16, p17, p18, p19, p2, p20, p3, p4, p5, p6, p7, p8, p9, vm [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6, y7, y8, y9, y10, y11, y12, y13, y14, y15, y16, y17, y18, y19, y20 [ Info: Summary of the model: [ Info: State variables: Ca, Cb, T, Tj, Arr [ Info: Parameters: Ca0, DH, E, R, Ta, Th, UA, V, Vh, cp, cph, k0, ro, roh [ Info: Inputs: u1, u2 [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: q1, q3, q35, q36, q7 [ Info: Parameters: R, S, V3, V36, k3, k4, k5, k6, k7 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: C, L, B, P, I [ Info: Parameters: ai, alpha, ap, beta, ks, rhob, rhoc, rhoi, rhol, rhop, taob, taoc, taoi, taop [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5 [ Info: Parameters: k2, k3, k4 [ Info: Inputs: [ Info: Outputs: y1, y2, y3 [ Info: Summary of the model: [ Info: State variables: pi1, pi2, pi3 [ Info: Parameters: A11, A12, A13, A21, A22, A23, A31, A32, A33, B11, B21, B31, g1, g2, g3 [ Info: Inputs: u1 [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: pi1, pi2, pi3 [ Info: Parameters: A11, A12, A13, A21, A22, A23, A31, A32, A33, B11, B21, B31, g1, g2, g3 [ Info: Inputs: u1 [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: beta11, beta12, beta21, beta22, r1, r2 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: T0, k, k1, k2, k3, k4, r1, r3 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: Sd, Sn, Ad, An, I [ Info: Parameters: ba, bi, delta, ea, es, f, gai, gir, h1, h2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, I, A, Q, J, R [ Info: Parameters: b, d1, d2, d3, d4, d5, d6, ea, ej, eq, g1, g2, k1, k2, l, m1, m2 [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: S, E, I [ Info: Parameters: K, L, N, b, e, g, m, r [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: Y2, Y1, Y3, Y4, Z0, Y0, Z1, Z2, Z3, w1, w2, I1, I4 [ Info: Parameters: D0, D1, D2, D3, D4, E0, E1, E2, E3, E4, J1, J2, J3, Tau, f1, m1, m2, m3, n, n1, n2, n3 [ Info: Inputs: [ Info: Outputs: O1, O2, O3, O4, O6, O7, O8, O9, O10 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, d_T, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, d_T, k_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, d_I, d_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: U, I, V, T [ Info: Parameters: beta, c, c_T, d_I, d_T, p, r, s_T [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: A, I, H, R, D, E [ Info: Parameters: N, a, c1, c2, d, h, r1, r2, r3, s [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: C, T, I, X, Y [ Info: Parameters: k1, k2, ka, kb, kc, kd, ke, kf, kg, kh, ki_inv, kj, kk, kl_inv, km [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4, x5, x6, x7, x8, x9, x10, x11, x12, x13, x14, x15 [ Info: Parameters: a1, a2, a3, c1, c1a, c1c, c2, c2a, c2c, c3, c3a, c3c, c4, c4a, c5, c5a, c6a, e1a, e2a, i1, i1a, k1, k2, k3, k_deg, k_prod, kv, t1, t2 [ Info: Inputs: u [ Info: Outputs: y1, y2, y3, y4, y5, y6 Test Summary: | Total Time Core/benchmarks_valid.jl | 0 55.7s Test Summary: | Pass Total Time Core/check_primality_zerodim.jl | 5 5 2m20.8s [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 Test Summary: | Pass Total Time Core/common_ring.jl | 2 2 47.1s Test Summary: | Pass Total Time Core/decompose_derivative.jl | 5 5 0.7s Test Summary: | Pass Total Time Core/det_minor_expansion.jl | 50 50 3.4s [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y Test Summary: | Pass Total Time Core/diff_sequence_solution.jl | 2 2 13.5s [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 1.796811 seconds (830.46 k allocations: 48.348 MiB, 99.57% compilation time) 0.002048 seconds (7.69 k allocations: 367.625 KiB) 0.002310 seconds (12.90 k allocations: 591.141 KiB) 0.001784 seconds (12.86 k allocations: 584.734 KiB) 0.002342 seconds (16.96 k allocations: 757.875 KiB) 0.001265 seconds (9.71 k allocations: 447.492 KiB) 0.000991 seconds (7.94 k allocations: 326.023 KiB) 13.585121 seconds (5.41 M allocations: 327.688 MiB, 0.84% gc time, 99.79% compilation time) Test Summary: | Pass Total Time Core/differentiate_output.jl | 58 58 45.5s [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.343187 seconds (86.77 k allocations: 5.495 MiB, 98.65% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.018631 seconds (7.83 k allocations: 454.727 KiB, 94.75% compilation time) Test Summary: | Pass Total Time Core/diffreduction.jl | 6 6 28.7s Test Summary: | Pass Total Time Core/exp_vec_trie.jl | 800 800 2.7s [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y Test Summary: | Pass Total Time Core/exports.jl | 6 6 6.0s Test Summary: | Pass Total Time Core/extract_coefficients.jl | 9 9 4.0s [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{Nemo.QQMPolyRingElem, Nemo.QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2) Test Summary: | Pass Total Time Core/find_leader.jl | 5 5 2.0s [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003873044 seconds [ Info: Computing Wronskians Assessing identifiability: Error During Test at /home/pkgeval/.julia/packages/StructuralIdentifiability/S5eMo/test/bodies/identifiability.jl:3 Got exception outside of a @test MethodError: no method matching power_series_solution(::StructuralIdentifiability.ODE{Nemo.fpMPolyRingElem}, ::Dict{Nemo.fpMPolyRingElem, Int64}, ::Dict{Nemo.fpMPolyRingElem, Int64}, ::Dict{Any, Any}, ::Int64) The function `power_series_solution` exists, but no method is defined for this combination of argument types. Closest candidates are: power_series_solution(::StructuralIdentifiability.ODE{P}, ::Dict{P, Int64}, ::Dict{P, Int64}, ::Dict{!Matched{P}, !Matched{Vector{Int64}}}, ::Int64) where P<:(AbstractAlgebra.MPolyRingElem{<:AbstractAlgebra.FieldElem}) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/ODE.jl:202 power_series_solution(::StructuralIdentifiability.ODE{P}, ::Dict{!Matched{P}, !Matched{T}}, ::Dict{!Matched{P}, !Matched{T}}, ::Dict{!Matched{P}, !Matched{Vector{T}}}, ::Int64) where {T<:AbstractAlgebra.FieldElem, P<:AbstractAlgebra.MPolyRingElem{T}} @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/ODE.jl:162 Stacktrace: [1] wronskian(io_equations::Dict{Nemo.QQMPolyRingElem, Nemo.QQMPolyRingElem}, ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/wronskian.jl:218 [2] macro expansion @ timing.jl:505 [inlined] [3] initial_identifiable_functions(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}; prob_threshold::Float64, known::Vector{Nemo.QQMPolyRingElem}, with_states::Bool, var_change_policy::Symbol, rational_interpolator::Symbol, cmp::Function) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/global_identifiability.jl:108 [4] check_identifiability(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}, funcs_to_check::Vector{Any}; known::Vector{Nemo.QQMPolyRingElem}, prob_threshold::Float64, var_change_policy::Symbol) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/global_identifiability.jl:202 [5] assess_global_identifiability(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}, funcs_to_check::Vector{Any}, known::Vector{Nemo.QQMPolyRingElem}, prob_threshold::Float64; var_change::Symbol) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/global_identifiability.jl:301 [6] assess_global_identifiability(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}, funcs_to_check::Vector{Any}, known::Vector{Nemo.QQMPolyRingElem}, prob_threshold::Float64) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/global_identifiability.jl:289 [inlined] [7] macro expansion @ timing.jl:505 [inlined] [8] _assess_identifiability(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}; funcs_to_check::Vector{AbstractAlgebra.RingElem}, prob_threshold::Float64) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/StructuralIdentifiability.jl:227 [9] (::StructuralIdentifiability.var"#462#463"{Vector{AbstractAlgebra.RingElem}, Vector{Union{AbstractAlgebra.Generic.FracFieldElem{Nemo.QQMPolyRingElem}, Nemo.QQMPolyRingElem}}, Float64, StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}})() @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/StructuralIdentifiability.jl:174 [10] with_logstate(f::StructuralIdentifiability.var"#462#463"{Vector{AbstractAlgebra.RingElem}, Vector{Union{AbstractAlgebra.Generic.FracFieldElem{Nemo.QQMPolyRingElem}, Nemo.QQMPolyRingElem}}, Float64, StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging logging/logging.jl:542 [11] with_logger(f::StructuralIdentifiability.var"#462#463"{Vector{AbstractAlgebra.RingElem}, Vector{Union{AbstractAlgebra.Generic.FracFieldElem{Nemo.QQMPolyRingElem}, Nemo.QQMPolyRingElem}}, Float64, StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}}, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging logging/logging.jl:653 [inlined] [12] assess_identifiability(ode::StructuralIdentifiability.ODE{Nemo.QQMPolyRingElem}; funcs_to_check::Vector{AbstractAlgebra.RingElem}, known_ic::Vector{Union{AbstractAlgebra.Generic.FracFieldElem{Nemo.QQMPolyRingElem}, Nemo.QQMPolyRingElem}}, prob_threshold::Float64, loglevel::Base.CoreLogging.LogLevel) @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/S5eMo/src/StructuralIdentifiability.jl:172 [inlined] [13] top-level scope @ ~/.julia/packages/StructuralIdentifiability/S5eMo/test/bodies/identifiability.jl:4 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [15] macro expansion @ ~/.julia/packages/StructuralIdentifiability/S5eMo/test/bodies/identifiability.jl:234 [inlined] Test Summary: | Error Total Time Core/identifiability.jl | 1 1 1m30.0s Assessing identifiability | 1 1 1m30.0s Assessing identifiability | 1 1 1m29.5s RNG of the outermost testset: Random.Xoshiro(0x8c4865e059629ade, 0x5afbb91f52f087ce, 0x51d1138a02411769, 0x1e1ec1811aa2c222, 0x09283d7817ecf643) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/S5eMo/test/runtests.jl:2 Testing failed after 479.55s ERROR: LoadError: Package StructuralIdentifiability errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 769.33s: package tests unexpectedly errored