Package evaluation to test PhyloPlots on Julia 1.14.0-DEV.3141 (fbd24f51d0*) started at 2026-09-09T02:02:30.892 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.41s ################################################################################ # Installation # Installing PhyloPlots... Resolving package versions... Installed Conda ─ v1.10.3 Installed RCall ─ v0.14.13 Updating `~/.julia/environments/v1.14/Project.toml` [c0d5b6db] + PhyloPlots v2.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.2.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.2 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.17 [324d7699] + CategoricalArrays v1.1.1 [944b1d66] + CodecZlib v0.7.9 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [c2308a5c] + FASTX v2.2.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [d9f16b24] + Functors v0.5.3 [a0844989] + Gamma v1.2.0 [34004b35] + HypergeometricFunctions v0.3.30 ⌅ [842dd82b] + InlineStrings v1.4.6 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.8.0 [b964fa9f] + LaTeXStrings v1.4.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.2.1 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 ⌅ [69de0a69] + Parsers v2.8.8 [33ad39ac] + PhyloNetworks v1.4.0 [c0d5b6db] + PhyloPlots v2.1.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [6f49c342] + RCall v0.14.13 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.8 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [90137ffa] + StaticArrays v1.9.20 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [3eaba693] + StatsModels v0.7.10 ⌅ [892a3eda] + StringManipulation v0.5.0 [354b36f9] + StringViews v2.0.1 [ec057cc2] + StructUtils v2.8.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.3 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.11.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.22.0+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.8+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/a2be505c76807bf9ce4220cde4e1b464c726eb2f/build.log` Installation completed after 57.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 20.5 s ✓ PhyloPlots 1 dependency successfully precompiled in 22 seconds. 141 already precompiled. Precompilation completed after 41.1s ################################################################################ # Testing # Testing PhyloPlots Status `/tmp/jl_Jl1P6R/Project.toml` [a93c6f00] DataFrames v1.8.2 [33ad39ac] PhyloNetworks v1.4.0 [c0d5b6db] PhyloPlots v2.1.0 [6f49c342] RCall v0.14.13 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Jl1P6R/Manifest.toml` [7d9f7c33] Accessors v0.1.45 [66dad0bd] AliasTables v1.1.3 [67c07d97] Automa v1.2.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.2 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.17 [324d7699] CategoricalArrays v1.1.1 [944b1d66] CodecZlib v0.7.9 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [c2308a5c] FASTX v2.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [d9f16b24] Functors v0.5.3 [a0844989] Gamma v1.2.0 [34004b35] HypergeometricFunctions v0.3.30 ⌅ [842dd82b] InlineStrings v1.4.6 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.8.0 [b964fa9f] LaTeXStrings v1.4.1 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.2.1 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.41 ⌅ [69de0a69] Parsers v2.8.8 [33ad39ac] PhyloNetworks v1.4.0 [c0d5b6db] PhyloPlots v2.1.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [6f49c342] RCall v0.14.13 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.8 [91c51154] SentinelArrays v1.4.10 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [90137ffa] StaticArrays v1.9.20 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.5 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 [3eaba693] StatsModels v0.7.10 ⌅ [892a3eda] StringManipulation v0.5.0 [354b36f9] StringViews v2.0.1 [ec057cc2] StructUtils v2.8.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.3 [1b915085] WinReg v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.11.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{RCall.LangSxp}, env::Ptr{RCall.EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{RCall.LangSxp}, env::Ptr{RCall.EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 Test setup for plotting PhyloNetworks objects: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:71 Expression: plot(net, shownodenumber = true, showgamma = true) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730e0d3), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477314cc5), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:71 [inlined] Test setup for plotting PhyloNetworks objects: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:84 Expression: plot(net, shownodenumber = true, showgamma = true) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730e0d3), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477314cc5), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_phylonetworkPlots.jl:84 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:6 Expression: plot(net) Log Pattern: (:warn, r"rootonedge!\(network_name, 2\)") Captured Logs: LogRecord(Warn, "The network is rooted at a leaf: the plot won't look good.\nTry rooting the network on the edge adjacent to that leaf, with\nrootonedge!(network_name, 2)", PhyloPlots, :plotRCall, :PhyloPlots_bd8a9e32, "/home/pkgeval/.julia/packages/PhyloPlots/OedGY/src/plotRCall.jl", 146, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:6 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:10 Expression: plot(net) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:10 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:11 Expression: plot(net, edgewidth = Dict(1 => 4, 28 => 28)) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477395ed5), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773984d9), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:11 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:12 Expression: plot(net, useedgelength = true) Log Pattern: (:warn, "At least one non-missing edge length: plotting any missing length as 1.0") Captured Logs: LogRecord(Warn, "At least one non-missing edge length: plotting any missing length as 1.0", PhyloPlots, :phylonetworksPlots, :PhyloPlots_a429a3a4, "/home/pkgeval/.julia/packages/PhyloPlots/OedGY/src/phylonetworksPlots.jl", 180, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:12 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:13 Expression: plot(net, showtiplabel = false) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:13 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:14 Expression: plot(net, shownodenumber = true, shownodelabel = true) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647739dd16), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730e0d3), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:14 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:15 Expression: plot(net, tipoffset = 1, showgamma = true, minorlinetype = 3) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773a65d9), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477314cc5), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:15 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:16 Expression: plot(net, showedgelength = true, showedgenumber = true) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773a89b3), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477314cc5), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:16 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:17 Expression: plot(net, edgecolor = "tomato4", minorhybridedgecolor = "skyblue", majorhybridedgecolor = "tan") Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:17 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:20 Expression: plot(net, nodelabel = dat) Log Pattern: (:warn, "Some node numbers in the nodelabel data frame are not found in the network:\n -1") Captured Logs: LogRecord(Warn, "Some node numbers in the nodelabel data frame are not found in the network:\n -1", PhyloPlots, :phylonetworksPlots, :PhyloPlots_8fdd06cd, "/home/pkgeval/.julia/packages/PhyloPlots/OedGY/src/phylonetworksPlots.jl", 301, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773ab3d6), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:20 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:21 Expression: plot(net, edgelabel = dat[!, [:edge, :bs]]) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773b0126), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:21 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:23 Expression: plot(net, style = :majortree, arrowlen = 0.1) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:23 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:24 Expression: plot(net, style = :bogus) Log Pattern: (:warn, "Style bogus is unknown. Defaulted to :fulltree.") Captured Logs: LogRecord(Warn, "Style bogus is unknown. Defaulted to :fulltree.", PhyloPlots, :plotRCall, :PhyloPlots_b18c21cf, "/home/pkgeval/.julia/packages/PhyloPlots/OedGY/src/plotRCall.jl", 221, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}()) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:24 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:30 Expression: plot(net2, style = :majortree, edgecolor = ecd, defaultedgecolor = "turquoise") Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773cb649), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:30 [inlined] RCall-based plots: Log Test Failed at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:49 Expression: plot(net2, preorder = false, edgelabel = DataFrame(num = [2, 6], annotate = [85.0001, 90])) Log Pattern: Captured Logs: LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477300f7d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477303b63), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730560d), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477306a15), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a6477308d59), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730ac53), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a647730c656), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) LogRecord(Warn, "`disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead.", RCall, :depwarn, (Ptr{Nothing}(0x00007a64773b0126), :disable_sigint), "/home/pkgeval/.julia/packages/RCall/fTLHT/src/eval.jl", 92, Base.Pairs{Symbol, Any, Nothing, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined], :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/logging.jl:166 [2] top-level scope @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:5 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloPlots/OedGY/test/test_plotRCall.jl:49 [inlined] ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 ┌ Warning: `disable_sigint` no longer defers Ctrl-C: SIGINT is delivered as a cancellation of the current ^C scope and observed at cancellation points regardless of the sigatomic region this establishes. Shield a region from cancellation by scoping `Base.CANCEL_TOKEN => nothing` over it instead. │ caller = tryEval(expr::Ptr{RCall.SymSxp}, env::Ptr{EnvSxp}, status::Base.RefValue{Int32}) at eval.jl:92 [inlined] └ @ RCall ~/.julia/packages/RCall/fTLHT/src/eval.jl:92 Test Summary: | Pass Fail Total Time PhyloPlots Tests | 48 17 65 1m36.0s Test setup for plotting PhyloNetworks objects | 11 2 13 1m05.2s RCall-based plots | 25 15 40 14.5s rexport and sexp tests | 12 12 8.9s RNG of the outermost testset: Random.Xoshiro(0x4cde4d0ecce7823d, 0x2cffcf244028e399, 0x5ae301b1e23a0938, 0xcfa67acfccd66465, 0x47da1ea3926119e3) ERROR: LoadError: Some tests did not pass: 48 passed, 17 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyloPlots/OedGY/test/runtests.jl:8 Testing failed after 130.68s ERROR: LoadError: Package PhyloPlots errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 306.05s: package has test failures