Package evaluation to test LinearMixingModels on Julia 1.14.0-DEV.3141 (fbd24f51d0*) started at 2026-09-08T20:25:45.027 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.06s ################################################################################ # Installation # Installing LinearMixingModels... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [b8ce4b42] + LinearMixingModels v0.1.11 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [7d9f7c33] + Accessors v0.1.45 [66dad0bd] + AliasTables v1.1.3 ⌅ [0a1fb500] + BlockDiagonals v0.1.42 [d360d2e6] + ChainRulesCore v1.26.1 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.6 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [1a297f60] + FillArrays v0.13.11 [26cc04aa] + FiniteDifferences v0.12.34 [d9f16b24] + Functors v0.5.3 ⌃ [a0844989] + Gamma v1.1.0 [34004b35] + HypergeometricFunctions v0.3.30 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.8.0 ⌅ [ec8451be] + KernelFunctions v0.10.67 [b8ce4b42] + LinearMixingModels v0.1.11 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.3 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.8 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [90137ffa] + StaticArrays v1.9.20 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.8 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.8+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 4.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 10.8 s ✓ KernelFunctions 3.1 s ✓ BlockDiagonals 10.5 s ✓ Distributions 56.1 s ✓ Zygote 4.3 s ✓ Distributions → DistributionsTestExt 3.9 s ✓ Distributions → DistributionsChainRulesCoreExt 6.6 s ✓ Zygote → ZygoteDistancesExt 6.9 s ✓ AbstractGPs 6.1 s ✓ LinearMixingModels 9 dependencies successfully precompiled in 111 seconds. 153 already precompiled. Precompilation completed after 121.23s ################################################################################ # Testing # Testing LinearMixingModels Status `/tmp/jl_k03wrQ/Project.toml` [99985d1d] AbstractGPs v0.5.24 [31c24e10] Distributions v0.25.131 [e30172f5] Documenter v1.19.0 ⌅ [1a297f60] FillArrays v0.13.11 ⌅ [ec8451be] KernelFunctions v0.10.67 [b8ce4b42] LinearMixingModels v0.1.11 ⌃ [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_k03wrQ/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 ⌅ [0a1fb500] BlockDiagonals v0.1.42 [082447d4] ChainRules v1.73.0 [d360d2e6] ChainRulesCore v1.26.1 [944b1d66] CodecZlib v0.7.9 [38540f10] CommonSolve v0.2.14 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.19.0 ⌅ [1a297f60] FillArrays v0.13.11 [26cc04aa] FiniteDifferences v0.12.34 [f6369f11] ForwardDiff v1.4.5 [d9f16b24] Functors v0.5.3 [46192b85] GPUArraysCore v0.2.0 ⌃ [a0844989] Gamma v1.1.0 [d7ba0133] Git v1.5.0 [34004b35] HypergeometricFunctions v0.3.30 [b5f81e59] IOCapture v1.0.0 [7869d1d1] IRTools v0.4.20 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.8.0 ⌅ [ec8451be] KernelFunctions v0.10.67 [0e77f7df] LazilyInitializedFields v1.3.0 [b8ce4b42] LinearMixingModels v0.1.11 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.4 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.41 [69de0a69] Parsers v3.0.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.3 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.8 [a2af1166] SortingAlgorithms v1.2.3 [dc90abb0] SparseInverseSubset v0.1.3 [276daf66] SpecialFunctions v2.9.0 [90137ffa] StaticArrays v1.9.20 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.5 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 [09ab397b] StructArrays v0.7.3 [ec057cc2] StructUtils v2.8.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 ⌃ [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.8 [2e619515] Expat_jll v2.8.4+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.55.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.5.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Internal error: during type inference of _pullback(Zygote.Context{false}, typeof(Distributions.logpdf), AbstractGPs.FiniteGP{LinearMixingModels.IndependentMOGP{Array{AbstractGPs.GP{AbstractGPs.ConstMean{Int64}, Tk} where Tk<:KernelFunctions.Kernel, 1}}, KernelFunctions.MOInputIsotopicByOutputs{Float64, Array{Float64, 1}, Int64}, LinearAlgebra.Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, Array{Float64, 1}) Encountered unexpected error in runtime: TypeError(func=:typeassert, context="", expected=Union{Nothing, Array{Any, 1}, Core.SimpleVector}, got=Array{Core.MethodInstance, 1}(dims=(4,), mem=Memory{Core.MethodInstance}(4, 0x7600fecf0560)[ MethodInstance _pullback(Zygote.Context{false}, typeof(ZygoteRules.literal_getfield), AbstractGPs.FiniteGP{LinearMixingModels.IndependentMOGP{Array{AbstractGPs.GP{AbstractGPs.ConstMean{Int64}, Tk} where Tk<:KernelFunctions.Kernel, 1}}, KernelFunctions.MOInputIsotopicByOutputs{Float64, Array{Float64, 1}, Int64}, LinearAlgebra.Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, Base.Val{:Σy}) from _pullback(ZygoteRules.AContext, typeof(ZygoteRules.literal_getfield), Any, Base.Val{f}) where {f}, MethodInstance _pullback(Zygote.Context{false}, typeof(Base.getproperty), AbstractGPs.FiniteGP{LinearMixingModels.IndependentMOGP{Array{AbstractGPs.GP{AbstractGPs.ConstMean{Int64}, Tk} where Tk<:KernelFunctions.Kernel, 1}}, KernelFunctions.MOInputIsotopicByOutputs{Float64, Array{Float64, 1}, Int64}, LinearAlgebra.Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, Symbol) from _pullback(ZygoteRules.AContext, Any, Any...), MethodInstance getproperty(AbstractGPs.FiniteGP{LinearMixingModels.IndependentMOGP{Array{AbstractGPs.GP{AbstractGPs.ConstMean{Int64}, Tk} where Tk<:KernelFunctions.Kernel, 1}}, KernelFunctions.MOInputIsotopicByOutputs{Float64, Array{Float64, 1}, Int64}, LinearAlgebra.Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, Symbol) from getproperty(Any, Symbol), MethodInstance rrule(typeof(Base.getproperty), AbstractGPs.FiniteGP{LinearMixingModels.IndependentMOGP{Array{AbstractGPs.GP{AbstractGPs.ConstMean{Int64}, Tk} where Tk<:KernelFunctions.Kernel, 1}}, KernelFunctions.MOInputIsotopicByOutputs{Float64, Array{Float64, 1}, Int64}, LinearAlgebra.Diagonal{Float64, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}}, Symbol) from rrule(Any, Any...)])) ijl_type_error_rt at /source/src/rtutils.c:121:5 ijl_type_error at /source/src/rtutils.c:140:5 compute_edges! at ./../usr/share/julia/Compiler/src/typeinfer.jl:910:0 (pc: 55) finishinfer! at ./../usr/share/julia/Compiler/src/typeinfer.jl:751:0 (pc: 198) finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:303:0 (pc: 4) jfptr_finish_nocycle_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:5107:0 (pc: 262) typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1795:0 (pc: 106) typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:2074:0 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:2083:0 (pc: 16) jfptr_typeinf_ext_toplevel_5.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] jl_type_infer at /source/src/gf.c:482:35 jl_compile_method_very_internal at /source/src/gf.c:4082:20 _jl_invoke at /source/src/gf.c:4582:16 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:1041:26 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96:0 (pc: 2) pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94:0 (pc: 4) unknown function (ip: 0x76015c3ae468) at (unknown file) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:1041:26 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153:0 (pc: 2) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:786:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:63:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2252:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:3:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2252:0 [inlined] top-level scope at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:2:0 (pc: 1804) jl_invoke_oneshot at /source/src/gf.c:4631:23 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 eval_body at /source/src/interpreter.c:704:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 macro expansion at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/runtests.jl:33:0 (pc: 1) [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2252:0 (pc: 16) [inlined] top-level scope at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/runtests.jl:33:0 (pc: 148) ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 top-level scope at none:6:0 (pc: 2) ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) __script_entry_eval at ./client.jl:106:0 [inlined] exec_options at ./client.jl:350:0 (pc: 426) _start at ./client.jl:695:0 (pc: 217) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] true_main at /source/src/jlapi.c:990:29 jl_repl_entrypoint at /source/src/jlapi.c:1157:15 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x760178bad249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [51] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:1 unknown function (ip: 0x760178c10ebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:501:9 jl_compile_method_very_internal at /source/src/gf.c:4082:20 _jl_invoke at /source/src/gf.c:4582:16 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:1041:26 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96:0 (pc: 2) pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94:0 (pc: 4) unknown function (ip: 0x76015c3ae468) at (unknown file) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] jl_f__apply_iterate at /source/src/builtins.c:1041:26 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153:0 (pc: 2) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:786:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:63:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2252:0 [inlined] macro expansion at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:3:0 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:2252:0 [inlined] top-level scope at /home/pkgeval/.julia/packages/LinearMixingModels/AOZwG/test/independent_mogp.jl:2:0 (pc: 1804) jl_invoke_oneshot at /source/src/gf.c:4631:23 ijl_eval_thunk at /source/src/toplevel.c:764:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 eval_body at /source/src/interpreter.c:704:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) __script_entry_eval at ./client.jl:106:0 [inlined] exec_options at ./client.jl:350:0 (pc: 426) _start at ./client.jl:695:0 (pc: 217) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2538:12 [inlined] true_main at /source/src/jlapi.c:990:29 jl_repl_entrypoint at /source/src/jlapi.c:1157:15 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x760178bad249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 29623116 (Pool: 29622434; Big: 682); GC: 16 Testing failed after 103.34s ERROR: LoadError: Package LinearMixingModels errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 295.33s: an internal error was encountered ################################################################################ # Bug reporting # The package crashed during testing (reason=internal), but PkgEval was unable to reproduce the crash under rr (status=crash, reason=abort). For debugging, here is the tail end of the rr log: > [0dad84c5] ArgTools v1.2.0 > [56f22d72] Artifacts v1.11.0 > [2a0f44e3] Base64 v1.11.0 > [ade2ca70] Dates v1.11.0 > [8ba89e20] Distributed v1.12.0 > [f43a241f] Downloads v1.7.0 > [7b1f6079] FileWatching v1.11.0 > [b77e0a4c] InteractiveUtils v1.11.0 > [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 > [b27032c2] LibCURL v1.0.0 > [76f85450] LibGit2 v1.11.0 > [8f399da3] Libdl v1.11.0 > [37e2e46d] LinearAlgebra v1.14.0 > [56ddb016] Logging v1.11.0 > [d6f4376e] Markdown v1.11.0 > [ca575930] NetworkOptions v1.3.0 > [44cfe95a] Pkg v1.14.0 > [de0858da] Printf v1.11.0 > [3fa0cd96] REPL v1.11.0 > [9a3f8284] Random v1.11.0 > [ea8e919c] SHA v1.13.0 > [9e88b42a] Serialization v1.11.0 > [6462fe0b] Sockets v1.11.0 > [2f01184e] SparseArrays v1.13.0 > [f489334b] StyledStrings v1.13.0 > [4607b0f0] SuiteSparse > [fa267f1f] TOML v1.0.3 > [a4e569a6] Tar v1.10.0 > [8dfed614] Test v1.11.0 > [cf7118a7] UUIDs v1.11.0 > [4ec0a83e] Unicode v1.11.0 > [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 > [deac9b47] LibCURL_jll v8.22.0+0 > [e37daf67] LibGit2_jll v1.9.7+0 > [29816b5a] LibSSH2_jll v1.11.104+0 > [14a3606d] MozillaCACerts_jll v2026.8.13 > [4536629a] OpenBLAS_jll v0.3.34+0 > [05823500] OpenLibm_jll v0.8.8+0 > [458c3c95] OpenSSL_jll v3.5.8+0 > [efcefdf7] PCRE2_jll v10.48.0+0 > [bea87d4a] SuiteSparse_jll v7.10.1+0 > [83775a58] Zlib_jll v1.3.2+0 > [3161d3a3] Zstd_jll v1.5.7+1 > [8e850b90] libblastrampoline_jll v5.15.0+0 > [8e850ede] nghttp2_jll v1.70.0+0 > [3f19e933] p7zip_jll v17.8.2+0 > Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. > Testing Running tests... > Activating project at `~/.julia/environments/pkgeval` > Activating project at `/tmp/jl_spFOeS` > Warning Some loaded packages differ from the active environment, which may affect reproducibility and trigger recompilation: > Parsers: loaded v2.8.8, environment specifies v3.0.0 > JSON: loaded v0.21.4, environment specifies v1.8.0 > Switching execution to under rr > [FATAL src/Task.cc:3848:spawn() errno: EPERM] PTRACE_SEIZE failed for tid 30; child probably died before reaching SIGSTOP > Child's message: > === Start rr backtrace: > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr[0x556001] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr[0x695feb] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr(_ZN2rr4Task5spawnERNS_7SessionERNS_8ScopedFdEPS3_S5_PiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorISC_SaISC_EESJ_i+0xbf0)[0x64f170] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr(_ZN2rr13RecordSessionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt6vectorIS6_SaIS6_EESD_RKNS_20DisableCPUIDFeaturesENS0_16SyscallBufferingEiNS_7BindCPUES8_PKNS_9TraceUuidEbbbb+0x317)[0x58b4b7] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr(_ZN2rr13RecordSession6createERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESB_RKNS_20DisableCPUIDFeaturesENS0_16SyscallBufferingEhNS_7BindCPUERKS7_PKNS_9TraceUuidEbbbbbb+0xc1e)[0x58c98e] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr(_ZN2rr13RecordCommand3runERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE+0x66f)[0x57eb7f] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr(main+0x181)[0x4d5e61] > /lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x77db07de024a] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x77db07de0305] > /home/pkgeval/.julia/artifacts/c73480318b081035ff316b4c4cc797feb1dcd626/bin/rr[0x4d8955] > === End rr backtrace > > Testing failed after 25.65s > > ERROR: LoadError: Package LinearMixingModels errored during testing (received signal: 6) > Stacktrace: > [1] pkgerror(msg::String) > @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 > [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) > @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 > [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 > [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 > [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 > [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) > @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] > [7] top-level scope > @ /PkgEval.jl/scripts/evaluate.jl:221 > in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 > > PkgEval crashed after 104.11s: the process was aborted > > > ################################################################################ > # Bug reporting > # > > Finalizing trace... > > BugReporting completed after 27.83s > Uploaded rr trace to https://s3.amazonaws.com/julialang-reports/nanosoldier/pkgeval/rr/LinearMixingModels-1788885181.tar.zst