Package evaluation to test EcoBase on Julia 1.14.0-DEV.3141 (fbd24f51d0*) started at 2026-09-08T13:08:29.323 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.44s ################################################################################ # Installation # Installing EcoBase... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [a58aae7d] + EcoBase v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [a58aae7d] + EcoBase v0.2.0 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [3cdcf5f2] + RecipesBase v1.3.4 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 1.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 14.9 s ✓ CommonMark 42.8 s ✓ Reseau 1.9 s ✓ EcoBase 42.7 s ✓ JuliaFormatter 105.6 s ✓ HTTP 4.2 s ✓ ResearchSoftwareMetadata 6 dependencies successfully precompiled in 213 seconds. 57 already precompiled. Precompilation completed after 228.28s ################################################################################ # Testing # Testing EcoBase Status `/tmp/jl_XOjjQf/Project.toml` [a58aae7d] EcoBase v0.2.0 [d7ba0133] Git v1.5.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.3.1 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XOjjQf/Manifest.toml` [00ebfdb7] CSTParser v3.5.0 [944b1d66] CodecZlib v0.7.9 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.2.0 ⌅ [864edb3b] DataStructures v0.18.22 [a58aae7d] EcoBase v0.2.0 [4e289a0a] EnumX v1.0.7 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.5.0 [cd3eb016] HTTP v2.6.7 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.8.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 ⌅ [bac558e1] OrderedCollections v1.8.2 [69de0a69] Parsers v3.0.0 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.3.1 [802f3686] Reseau v1.4.1 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.8.5 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.7.0 [ddb6d928] YAML v0.4.16 [2e619515] Expat_jll v2.8.4+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.55.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.5.1+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.22.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Potentially missing tests: - EcoBase.jl - PlotRecipes.jl [ Info: Running tests for files: = DataTypes.jl = Interface.jl [ Info: Running tests... * Testing DataTypes.jl ... WARNING: Use of EcoBase.AbstractGrid is deprecated, use AbstractRegularGrid instead. likely near /home/pkgeval/.julia/packages/EcoBase/99OOF/test/test_DataTypes.jl:162 WARNING: Use of EcoBase.AbstractGrid is deprecated, use AbstractRegularGrid instead. likely near /home/pkgeval/.julia/packages/EcoBase/99OOF/test/test_DataTypes.jl:194 * Testing Interface.jl ... Test Summary: | Pass Total Time EcoBase.jl | 284 284 21.9s ┌ Warning: NOT cross validating (not in the test environment - check whether they now allow this version of EcoBase): └ @ Main ~/.julia/packages/EcoBase/99OOF/test/runtests.jl:84 ! Diversity ! Microbiome ! SpatialEcology [ Info: Crosswalk and clean testing: = JuliaFormatter = ResearchSoftwareMetadata * Verifying JuliaFormatter.jl ... fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). JuliaFormatter: Error During Test at /home/pkgeval/.julia/packages/EcoBase/99OOF/test/clean_JuliaFormatter.jl:17 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/bin/git rev-parse --show-toplevel`,["GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/share/git-core/templates", "CI=true", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_XOjjQf", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/libexec/git-core", "JULIA_PKG_PRECOMPILE_AUTO=0", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/2b2b302e07ca5f3ec952a3a4bd9d20594eaedb61/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "JULIA_NUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/bin:/home/pkgeval/.julia/artifacts/6ff18ab92263c283d145d6ae86835e8f7aed7990/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error(proc::Base.Process) @ Base process.jl:651 [inlined] [2] read(cmd::Cmd; cancel::Base.UseDefaultToken) @ Base process.jl:520 [3] read(cmd::Cmd, ::Core.TypeEgal{String}; cancel::Base.UseDefaultToken) @ Base process.jl:529 [inlined] [4] readchomp(x::Cmd; cancel::Base.UseDefaultToken) @ Base io.jl:1283 [5] readchomp(x::Cmd) @ Base io.jl:1279 [6] top-level scope @ ~/.julia/packages/EcoBase/99OOF/test/clean_JuliaFormatter.jl:18 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [8] macro expansion @ ~/.julia/packages/EcoBase/99OOF/test/clean_JuliaFormatter.jl:18 [inlined] * Verifying ResearchSoftwareMetadata.jl ... fatal: not a git repository (or any parent up to mount point /home/pkgeval/.julia) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). RSMD: Error During Test at /home/pkgeval/.julia/packages/EcoBase/99OOF/test/clean_ResearchSoftwareMetadata.jl:18 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/bin/git rev-parse --show-toplevel`,["GIT_SSL_CAINFO=/opt/julia/share/julia/cert.pem", "GIT_TEMPLATE_DIR=/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/share/git-core/templates", "CI=true", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_XOjjQf", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "GIT_EXEC_PATH=/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/libexec/git-core", "JULIA_PKG_PRECOMPILE_AUTO=0", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/2b2b302e07ca5f3ec952a3a4bd9d20594eaedb61/lib:/home/pkgeval/.julia/artifacts/5acd766faaca59c3c1f3cfa67e2bf6dcf1e3e883/lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "JULIA_NUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/cbc69e6685959a713544a0b78531d49cb0ef8154/bin:/home/pkgeval/.julia/artifacts/3f4122d832fb26a4b850eb4882c813111acf1817/bin:/home/pkgeval/.julia/artifacts/6ff18ab92263c283d145d6ae86835e8f7aed7990/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(128)) [128] Stacktrace: [1] pipeline_error(proc::Base.Process) @ Base process.jl:651 [inlined] [2] read(cmd::Cmd; cancel::Base.UseDefaultToken) @ Base process.jl:520 [3] read(cmd::Cmd, ::Core.TypeEgal{String}; cancel::Base.UseDefaultToken) @ Base process.jl:529 [inlined] [4] readchomp(x::Cmd; cancel::Base.UseDefaultToken) @ Base io.jl:1283 [5] readchomp(x::Cmd) @ Base io.jl:1279 [6] top-level scope @ ~/.julia/packages/EcoBase/99OOF/test/clean_ResearchSoftwareMetadata.jl:19 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2252 [inlined] [8] macro expansion @ ~/.julia/packages/EcoBase/99OOF/test/clean_ResearchSoftwareMetadata.jl:19 [inlined] Test Summary: | Error Total Time test set | 2 2 18.6s c = JuliaFormatter | 1 1 13.5s JuliaFormatter | 1 1 9.6s c = ResearchSoftwareMetadata | 1 1 5.1s RSMD | 1 1 0.9s RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/EcoBase/99OOF/test/runtests.jl:109 Testing failed after 63.53s ERROR: LoadError: Package EcoBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 345.87s: package tests unexpectedly errored