Package evaluation to test PEtabTraining on Julia 1.14.0-DEV.3128 (f573e2bf71*) started at 2026-09-07T06:41:56.441 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.53s ################################################################################ # Installation # Installing PEtabTraining... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [ed36266e] + PEtabTraining v0.1.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [14f7f29c] + AMD v0.5.4 [6e696c72] + AbstractPlutoDingetjes v1.4.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.30.1 [4c555306] + ArrayLayouts v1.12.2 [aae01518] + BandedMatrices v1.12.0 [e2ed5e7c] + Bijections v0.2.2 [b2a6c25c] + BinaryHeaps v1.1.0 [caf10ac8] + BipartiteGraphs v0.1.13 [8e7c35d0] + BlockArrays v1.10.0 [70df07ce] + BracketingNonlinearSolve v1.12.6 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.17 [479239e8] + Catalyst v16.4.0 [d360d2e6] + ChainRulesCore v1.26.1 [944b1d66] + CodecZlib v0.7.9 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.14 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.2.1 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.48 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.8 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v7.20.0 [459566f4] + DiffEqCallbacks v4.19.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [a0c0ee7d] + DifferentiationInterface v0.7.21 [8d63f2c5] + DispatchDoctor v0.4.28 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.8.1 [7c1d4256] + DynamicPolynomials v0.6.8 [06fc5a27] + DynamicQuantities v1.13.0 [4e289a0a] + EnumX v1.0.7 [f151be2c] + EnzymeCore v0.8.21 [e2ba6199] + ExprTools v0.1.11 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v1.4.0 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.5.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [64ca27bc] + FindFirstFunctions v3.2.1 [6a86dc24] + FiniteDiff v2.33.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.4.5 [a85aefff] + FunctionMaps v0.1.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v1.13.0 [d9f16b24] + Functors v0.5.3 [46192b85] + GPUArraysCore v0.2.0 [a0844989] + Gamma v1.2.0 [86223c79] + Graphs v1.14.0 [f67ccb44] + HDF5 v0.17.3 [34004b35] + HypergeometricFunctions v0.3.30 [615f187c] + IfElse v0.1.1 [3263718b] + ImplicitDiscreteSolve v2.2.1 [d25df0c9] + Inflate v0.1.5 ⌅ [842dd82b] + InlineStrings v1.4.6 [18e54dd8] + IntegerMathUtils v0.1.4 [8197267c] + IntervalSets v0.7.14 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.32.0 [ba0b0d4f] + Krylov v0.10.9 [2faa5264] + LHLFactorization v2.2.2 [b964fa9f] + LaTeXStrings v1.4.1 [23fbe1c1] + Latexify v0.16.12 [73f95e8e] + LatticeRules v0.0.1 [87fe0de2] + LineSearch v0.1.16 [7ed4a6bd] + LinearSolve v5.15.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.12 [1914dd2f] + MacroTools v0.5.16 [bb5d69b7] + MaybeInplace v0.1.8 [e1d29d7a] + Missings v1.2.0 [7771a370] + ModelingToolkitBase v1.68.2 [2e0e35c7] + Moshi v0.3.12 [46d2c3a1] + MuladdMacro v0.2.7 [102ac46a] + MultivariatePolynomials v0.5.19 [d8a4904e] + MutableArithmetics v1.8.0 [77ba4419] + NaNMath v1.1.4 [8913a72c] + NonlinearSolve v4.29.1 [be0214bd] + NonlinearSolveBase v2.49.3 [5959db7a] + NonlinearSolveFirstOrder v2.5.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.15.3 [26075421] + NonlinearSolveSpectralMethods v1.8.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v2.0.1 [6ad6398a] + OrdinaryDiffEqBDF v2.4.6 [bbf590c4] + OrdinaryDiffEqCore v4.16.0 [4302a76b] + OrdinaryDiffEqDifferentiation v3.11.4 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v2.9.4 [43230ef6] + OrdinaryDiffEqRosenbrock v2.7.1 [b4bd8bb3] + OrdinaryDiffEqRosenbrockTableaus v2.4.2 [2d112036] + OrdinaryDiffEqSDIRK v2.9.2 [b1df2697] + OrdinaryDiffEqTsit5 v2.1.4 [90014a1f] + PDMats v0.11.41 [48d54b35] + PEtab v5.4.3 [ed36266e] + PEtabTraining v0.1.3 [d96e819e] + Parameters v0.13.1 ⌅ [69de0a69] + Parsers v2.8.8 [e409e4f3] + PoissonRandom v0.4.13 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v1.7.1 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [0c0d3e7f] + PureKLU v1.4.1 [1fd47b50] + QuadGK v2.11.3 [8a4e6c94] + QuasiMonteCarlo v0.4.1 [988b38a3] + ReadOnlyArrays v0.2.0 [795d4caa] + ReadOnlyDicts v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v4.5.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [9fe22ead] + RespecializeParams v1.3.0 [37e2e3b7] + ReverseDiff v1.17.0 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.8 [7e49a35a] + RuntimeGeneratedFunctions v0.5.25 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v4.1.1 [9dfe8606] + SCCNonlinearSolve v1.15.2 [0bca4576] + SciMLBase v3.50.2 [19f34311] + SciMLJacobianOperators v0.1.18 [a6db7da4] + SciMLLogging v2.1.0 [c0aeaf25] + SciMLOperators v1.30.0 [431bcebd] + SciMLPublic v1.3.0 [53ae85a6] + SciMLStructures v1.10.5 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.14.1 [699a6c99] + SimpleTraits v0.9.6 [ce78b400] + SimpleUnPack v1.1.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.3 [a57abbd0] + SparseColumnPivotedQR v2.1.8 [0a514795] + SparseMatrixColorings v0.4.28 [276daf66] + SpecialFunctions v2.9.0 [0c0c59c1] + StarAlgebras v0.3.0 [aedffcd0] + Static v1.4.6 [0d7ed370] + StaticArrayInterface v1.10.0 [90137ffa] + StaticArrays v1.9.20 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [69024149] + StringEncodings v0.3.7 ⌅ [892a3eda] + StringManipulation v0.5.0 [c3572dad] + Sundials v6.6.0 [2efcf032] + SymbolicIndexingInterface v0.3.55 [19f23fe9] + SymbolicLimits v1.2.1 ⌃ [d1185830] + SymbolicUtils v4.46.1 [0c5d862f] + Symbolics v7.39.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.1.0 [a759f4b9] + TimerOutputs v1.2.1 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.29.0 [d30d5f5c] + WeakCacheSets v0.1.0 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.16 [61579ee1] + Ghostscript_jll v9.55.1+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.14.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.2.0+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v5.0.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.6+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [656ef2d0] + OpenBLAS32_jll v0.3.34+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [bb12108a] + SBML_jll v5.21.0+0 [ca45d3f4] + SuiteSparse32_jll v7.12.1+1 [fb77eaff] + Sundials_jll v7.5.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.19.0+0 [477f73a3] + libaec_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.3.0+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.8+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.48.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 16.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/sTG3E/src/julia-1.13/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 20.5 s ✓ ComponentArrays → ComponentArraysReverseDiffExt 3.7 s ✓ Lux → ComponentArraysExt ┌ Warning: the bare singleton variant syntax `HashedRandom` is deprecated, write `HashedRandom()` instead (near /home/pkgeval/.julia/packages/ModelingToolkitBase/PHXso/src/systems/problem_utils.jl:303) │ caller = ip:0x0 └ @ Core :-1 WARNING: @nospecialize annotation only supported on the first 32 arguments. 91.1 s ✓ ModelingToolkitBase 30.2 s ✓ ModelingToolkitBase → MTKChainRulesCoreExt 31.6 s ✓ ModelingToolkitBase → MTKDynamicQuantitiesExt 28.4 s ✓ ModelingToolkitBase → MTKLatexifyExt 62.8 s ✓ Catalyst 109.0 s ✓ SBMLImporter 40.5 s ✓ SBMLImporter → SBMLImporterForwardDiffExt 365.1 s ✓ PEtab 107.6 s ✓ PEtab → PEtabOptimisersExtension 114.9 s ✓ PEtab → PEtabLuxExtension 123.8 s ✓ PEtabTraining 13 dependencies successfully precompiled in 1132 seconds. 471 already precompiled. 1 dependency had output during precompilation: ┌ ModelingToolkitBase │ ┌ Warning: the bare singleton variant syntax `HashedRandom` is deprecated, write `HashedRandom()` instead (near /home/pkgeval/.julia/packages/ModelingToolkitBase/PHXso/src/systems/problem_utils.jl:303) │ │ caller = ip:0x0 │ └ @ Core :-1 │ WARNING: @nospecialize annotation only supported on the first 32 arguments. └ Precompilation completed after 1136.15s ################################################################################ # Testing # Testing PEtabTraining Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_EICIKP/Project.toml` [4c88cf16] + Aqua v0.8.16 ⌃ [479239e8] ↓ Catalyst v16.4.0 ⇒ v16.2.1 ⌃ [b0b7db55] ↓ ComponentArrays v0.15.48 ⇒ v0.15.44 [b2108857] + Lux v1.31.4 ⌅ [43230ef6] ↓ OrdinaryDiffEqRosenbrock v2.7.1 ⇒ v1.31.1 ⌃ [48d54b35] ↓ PEtab v5.4.3 ⇒ v5.4.2 [ed36266e] + PEtabTraining v0.1.3 [1bc83da4] + SafeTestsets v0.1.0 [fd094767] + Suppressor v0.2.8 Updating `/tmp/jl_EICIKP/Manifest.toml` [4c88cf16] + Aqua v0.8.16 [a9b6321e] + Atomix v1.1.3 [ab4f0b2a] + BFloat16s v0.6.1 [b2a6c25c] - BinaryHeaps v1.1.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌃ [70df07ce] ↓ BracketingNonlinearSolve v1.12.6 ⇒ v1.12.1 [2a0fbf3d] + CPUSummary v0.2.7 ⌃ [479239e8] ↓ Catalyst v16.4.0 ⇒ v16.2.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌃ [b0b7db55] ↓ ComponentArrays v0.15.48 ⇒ v0.15.44 [adafc99b] + CpuId v0.3.1 ⌅ [2b5f629d] ↓ DiffEqBase v7.20.0 ⇒ v6.218.0 ⌃ [459566f4] ↓ DiffEqCallbacks v4.19.3 ⇒ v4.19.2 [21656369] + ExpressionExplorer v1.1.5 [64ca27bc] - FindFirstFunctions v3.2.1 [076d061b] + HashArrayMappedTries v0.2.0 ⌃ [3263718b] ↓ ImplicitDiscreteSolve v2.2.1 ⇒ v1.11.0 ⌃ [ccbc3e58] ↓ JumpProcesses v9.32.0 ⇒ v9.29.0 [63c18a36] + KernelAbstractions v0.9.42 [2faa5264] - LHLFactorization v2.2.2 [10f19ff3] + LayoutPointers v0.1.17 ⌃ [87fe0de2] ↓ LineSearch v0.1.16 ⇒ v0.1.14 ⌅ [7ed4a6bd] ↓ LinearSolve v5.15.1 ⇒ v3.87.0 [b2108857] + Lux v1.31.4 [bb33d45b] + LuxCore v1.5.3 [82251201] + LuxLib v1.15.9 [7e8f7934] + MLDataDevices v1.17.10 [d125e4d3] + ManualMemory v0.1.8 ⌃ [7771a370] ↓ ModelingToolkitBase v1.68.2 ⇒ v1.42.2 [872c559c] + NNlib v0.9.45 ⌃ [8913a72c] ↓ NonlinearSolve v4.29.1 ⇒ v4.19.1 ⌅ [be0214bd] ↓ NonlinearSolveBase v2.49.3 ⇒ v2.30.3 ⌃ [5959db7a] ↓ NonlinearSolveFirstOrder v2.5.0 ⇒ v2.1.1 ⌃ [9a2c21bd] ↓ NonlinearSolveQuasiNewton v1.15.3 ⇒ v1.13.1 ⌃ [26075421] ↓ NonlinearSolveSpectralMethods v1.8.1 ⇒ v1.7.1 [3bd65402] + Optimisers v0.4.9 ⌅ [bac558e1] ↓ OrderedCollections v2.0.1 ⇒ v1.8.2 ⌃ [6ad6398a] ↓ OrdinaryDiffEqBDF v2.4.6 ⇒ v1.26.0 ⌅ [bbf590c4] ↓ OrdinaryDiffEqCore v4.16.0 ⇒ v3.33.1 ⌅ [4302a76b] ↓ OrdinaryDiffEqDifferentiation v3.11.4 ⇒ v2.9.0 ⌅ [127b3ac7] ↓ OrdinaryDiffEqNonlinearSolve v2.9.4 ⇒ v1.28.0 ⌅ [43230ef6] ↓ OrdinaryDiffEqRosenbrock v2.7.1 ⇒ v1.31.1 [b4bd8bb3] - OrdinaryDiffEqRosenbrockTableaus v2.4.2 ⌅ [2d112036] ↓ OrdinaryDiffEqSDIRK v2.9.2 ⇒ v1.14.0 ⌃ [b1df2697] ↓ OrdinaryDiffEqTsit5 v2.1.4 ⇒ v1.12.0 ⌃ [48d54b35] ↓ PEtab v5.4.3 ⇒ v5.4.2 [ed36266e] + PEtabTraining v0.1.3 [f517fe37] + Polyester v0.7.19 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [8a4e6c94] ↓ QuasiMonteCarlo v0.4.1 ⇒ v0.3.11 [a3311ec8] + ReactantCore v0.1.21 ⌅ [731186ca] ↓ RecursiveArrayTools v4.5.1 ⇒ v3.54.0 [9fe22ead] - RespecializeParams v1.3.0 ⌃ [9dfe8606] ↓ SCCNonlinearSolve v1.15.2 ⇒ v1.13.0 [94e857df] + SIMDTypes v0.1.0 [1bc83da4] + SafeTestsets v0.1.0 ⌅ [0bca4576] ↓ SciMLBase v3.50.2 ⇒ v2.155.2 ⌃ [19f34311] ↓ SciMLJacobianOperators v0.1.18 ⇒ v0.1.17 ⌅ [a6db7da4] ↓ SciMLLogging v2.1.0 ⇒ v1.10.1 [7e506255] + ScopedValues v1.6.2 ⌃ [727e6d20] ↓ SimpleNonlinearSolve v2.14.1 ⇒ v2.12.0 [7792a7ef] + StrideArraysCore v0.5.9 ⌃ [c3572dad] ↓ Sundials v6.6.0 ⇒ v6.3.0 [fd094767] + Suppressor v0.2.8 ⌅ [d1185830] ↓ SymbolicUtils v4.46.1 ⇒ v4.45.0 [8290d209] + ThreadingUtilities v0.5.6 ⌅ [a759f4b9] ↓ TimerOutputs v1.2.1 ⇒ v0.5.29 [013be700] + UnsafeAtomics v0.3.2 [d49dbf32] + WeightInitializers v1.3.4 ⌅ [0234f1f7] ↑ HDF5_jll v1.14.3+3 ⇒ v2.1.2+0 ⌅ [b5ada748] + MPIABI_jll v0.1.5+0 [fe0851c0] ↑ OpenMPI_jll v4.1.9+0 ⇒ v5.0.11+0 ⌅ [2b3700d1] + aws_c_auth_jll v0.9.6+0 ⌅ [70f11efc] + aws_c_cal_jll v0.9.13+0 ⌅ [73048d1d] + aws_c_common_jll v0.12.6+0 ⌅ [73a04cd5] + aws_c_compression_jll v0.3.2+0 ⌅ [3254fc65] + aws_c_http_jll v0.10.15+0 ⌅ [13c41daa] + aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] + aws_c_s3_jll v0.11.5+0 ⌅ [1282aa60] + aws_c_sdkutils_jll v0.2.4+1 ⌅ [b2a88e68] + aws_checksums_jll v0.2.10+0 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 ⌅ [9aeb927a] + mpif_jll v0.1.7+0 [cddc5d3d] + s2n_tls_jll v1.7.8+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_EICIKP/Project.toml` [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [336ed68f] CSV v0.10.17 ⌃ [479239e8] Catalyst v16.2.1 ⌃ [b0b7db55] ComponentArrays v0.15.44 [a93c6f00] DataFrames v1.8.2 [b2108857] Lux v1.31.4 ⌅ [43230ef6] OrdinaryDiffEqRosenbrock v1.31.1 ⌃ [48d54b35] PEtab v5.4.2 [ed36266e] PEtabTraining v0.1.3 [1bc83da4] SafeTestsets v0.1.0 [ce78b400] SimpleUnPack v1.1.0 [2913bbd2] StatsBase v0.34.13 [fd094767] Suppressor v0.2.8 [37e2e46d] LinearAlgebra v1.14.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EICIKP/Manifest.toml` [47edcb42] ADTypes v1.24.0 [14f7f29c] AMD v0.5.4 [6e696c72] AbstractPlutoDingetjes v1.4.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.30.1 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.3 [ab4f0b2a] BFloat16s v0.6.1 [aae01518] BandedMatrices v1.12.0 [e2ed5e7c] Bijections v0.2.2 [caf10ac8] BipartiteGraphs v0.1.13 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.10.0 ⌃ [70df07ce] BracketingNonlinearSolve v1.12.1 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.17 ⌃ [479239e8] Catalyst v16.2.1 [d360d2e6] ChainRulesCore v1.26.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.9 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.14 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.2.1 [34da2185] Compat v4.18.1 ⌃ [b0b7db55] ComponentArrays v0.15.44 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.8 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [2b5f629d] DiffEqBase v6.218.0 ⌃ [459566f4] DiffEqCallbacks v4.19.2 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [a0c0ee7d] DifferentiationInterface v0.7.21 [8d63f2c5] DispatchDoctor v0.4.28 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.8.1 [7c1d4256] DynamicPolynomials v0.6.8 [06fc5a27] DynamicQuantities v1.13.0 [4e289a0a] EnumX v1.0.7 [f151be2c] EnzymeCore v0.8.21 [e2ba6199] ExprTools v0.1.11 [21656369] ExpressionExplorer v1.1.5 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v1.4.0 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.5.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [6a86dc24] FiniteDiff v2.33.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.4.5 [a85aefff] FunctionMaps v0.1.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v1.13.0 [d9f16b24] Functors v0.5.3 [46192b85] GPUArraysCore v0.2.0 [a0844989] Gamma v1.2.0 [86223c79] Graphs v1.14.0 [f67ccb44] HDF5 v0.17.3 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.30 [615f187c] IfElse v0.1.1 ⌃ [3263718b] ImplicitDiscreteSolve v1.11.0 [d25df0c9] Inflate v0.1.5 ⌅ [842dd82b] InlineStrings v1.4.6 [18e54dd8] IntegerMathUtils v0.1.4 [8197267c] IntervalSets v0.7.14 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [ae98c720] Jieko v0.2.1 ⌃ [ccbc3e58] JumpProcesses v9.29.0 [63c18a36] KernelAbstractions v0.9.42 [ba0b0d4f] Krylov v0.10.9 [b964fa9f] LaTeXStrings v1.4.1 [23fbe1c1] Latexify v0.16.12 [73f95e8e] LatticeRules v0.0.1 [10f19ff3] LayoutPointers v0.1.17 ⌃ [87fe0de2] LineSearch v0.1.14 ⌅ [7ed4a6bd] LinearSolve v3.87.0 [2ab3a3ac] LogExpFunctions v1.0.1 [e6f89c97] LoggingExtras v1.2.0 [b2108857] Lux v1.31.4 [bb33d45b] LuxCore v1.5.3 [82251201] LuxLib v1.15.9 [7e8f7934] MLDataDevices v1.17.10 [3da0fdf6] MPIPreferences v0.1.12 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.8 [e1d29d7a] Missings v1.2.0 ⌃ [7771a370] ModelingToolkitBase v1.42.2 [2e0e35c7] Moshi v0.3.12 [46d2c3a1] MuladdMacro v0.2.7 [102ac46a] MultivariatePolynomials v0.5.19 [d8a4904e] MutableArithmetics v1.8.0 [872c559c] NNlib v0.9.45 [77ba4419] NaNMath v1.1.4 ⌃ [8913a72c] NonlinearSolve v4.19.1 ⌅ [be0214bd] NonlinearSolveBase v2.30.3 ⌃ [5959db7a] NonlinearSolveFirstOrder v2.1.1 ⌃ [9a2c21bd] NonlinearSolveQuasiNewton v1.13.1 ⌃ [26075421] NonlinearSolveSpectralMethods v1.7.1 [6fe1bfb0] OffsetArrays v1.17.0 [3bd65402] Optimisers v0.4.9 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.26.0 ⌅ [bbf590c4] OrdinaryDiffEqCore v3.33.1 ⌅ [4302a76b] OrdinaryDiffEqDifferentiation v2.9.0 ⌅ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.28.0 ⌅ [43230ef6] OrdinaryDiffEqRosenbrock v1.31.1 ⌅ [2d112036] OrdinaryDiffEqSDIRK v1.14.0 ⌃ [b1df2697] OrdinaryDiffEqTsit5 v1.12.0 [90014a1f] PDMats v0.11.41 ⌃ [48d54b35] PEtab v5.4.2 [ed36266e] PEtabTraining v0.1.3 [d96e819e] Parameters v0.13.1 ⌅ [69de0a69] Parsers v2.8.8 [e409e4f3] PoissonRandom v0.4.13 [f517fe37] Polyester v0.7.19 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v1.7.1 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [0c0d3e7f] PureKLU v1.4.1 [1fd47b50] QuadGK v2.11.3 ⌅ [8a4e6c94] QuasiMonteCarlo v0.3.11 [a3311ec8] ReactantCore v0.1.21 [988b38a3] ReadOnlyArrays v0.2.0 [795d4caa] ReadOnlyDicts v1.0.1 [3cdcf5f2] RecipesBase v1.3.4 ⌅ [731186ca] RecursiveArrayTools v3.54.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [37e2e3b7] ReverseDiff v1.17.0 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.8 [7e49a35a] RuntimeGeneratedFunctions v0.5.25 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v4.1.1 ⌃ [9dfe8606] SCCNonlinearSolve v1.13.0 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0bca4576] SciMLBase v2.155.2 ⌃ [19f34311] SciMLJacobianOperators v0.1.17 ⌅ [a6db7da4] SciMLLogging v1.10.1 [c0aeaf25] SciMLOperators v1.30.0 [431bcebd] SciMLPublic v1.3.0 [53ae85a6] SciMLStructures v1.10.5 [7e506255] ScopedValues v1.6.2 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 ⌃ [727e6d20] SimpleNonlinearSolve v2.12.0 [699a6c99] SimpleTraits v0.9.6 [ce78b400] SimpleUnPack v1.1.0 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.3 [a57abbd0] SparseColumnPivotedQR v2.1.8 [0a514795] SparseMatrixColorings v0.4.28 [276daf66] SpecialFunctions v2.9.0 [0c0c59c1] StarAlgebras v0.3.0 [aedffcd0] Static v1.4.6 [0d7ed370] StaticArrayInterface v1.10.0 [90137ffa] StaticArrays v1.9.20 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.5 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 [7792a7ef] StrideArraysCore v0.5.9 [69024149] StringEncodings v0.3.7 ⌅ [892a3eda] StringManipulation v0.5.0 ⌃ [c3572dad] Sundials v6.3.0 [fd094767] Suppressor v0.2.8 [2efcf032] SymbolicIndexingInterface v0.3.55 [19f23fe9] SymbolicLimits v1.2.1 ⌅ [d1185830] SymbolicUtils v4.45.0 [0c5d862f] Symbolics v7.39.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.1.0 [8290d209] ThreadingUtilities v0.5.6 ⌅ [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.29.0 [013be700] UnsafeAtomics v0.3.2 [d30d5f5c] WeakCacheSets v0.1.0 [ea10d353] WeakRefStrings v1.4.3 [d49dbf32] WeightInitializers v1.3.4 [76eceee3] WorkerUtilities v1.6.1 [ddb6d928] YAML v0.4.16 [61579ee1] Ghostscript_jll v9.55.1+0 ⌅ [0234f1f7] HDF5_jll v2.1.2+0 [e33a78d0] Hwloc_jll v2.14.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.2.0+1 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 ⌅ [b5ada748] MPIABI_jll v0.1.5+0 [7cb0a576] MPICH_jll v5.0.1+0 [f1f71cc9] MPItrampoline_jll v5.5.6+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [656ef2d0] OpenBLAS32_jll v0.3.34+0 [fe0851c0] OpenMPI_jll v5.0.11+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.2+0 [bb12108a] SBML_jll v5.21.0+0 [ca45d3f4] SuiteSparse32_jll v7.12.1+1 [fb77eaff] Sundials_jll v7.5.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 ⌅ [2b3700d1] aws_c_auth_jll v0.9.6+0 ⌅ [70f11efc] aws_c_cal_jll v0.9.13+0 ⌅ [73048d1d] aws_c_common_jll v0.12.6+0 ⌅ [73a04cd5] aws_c_compression_jll v0.3.2+0 ⌅ [3254fc65] aws_c_http_jll v0.10.15+0 ⌅ [13c41daa] aws_c_io_jll v0.26.3+0 ⌅ [bd1f34fb] aws_c_s3_jll v0.11.5+0 ⌅ [1282aa60] aws_c_sdkutils_jll v0.2.4+1 ⌅ [b2a88e68] aws_checksums_jll v0.2.10+0 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [477f73a3] libaec_jll v1.1.7+0 ⌅ [9aeb927a] mpif_jll v0.1.7+0 [1317d2d5] oneTBB_jll v2022.3.0+0 [cddc5d3d] s2n_tls_jll v1.7.8+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.12.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: The following 3 packages failed to precompile: PEtab Failed to precompile PEtab [48d54b35-e43e-4a66-a5a1-dde6b987cf69] to "/home/pkgeval/.julia/compiled/v1.14/PEtab/jl_ZJBxFk" (ProcessExited(1)). jl_uH8DC7OX0j Failed to precompile jl_uH8DC7OX0j [6960af38-6618-453b-aede-f6fd02b6f9da] to "/home/pkgeval/.julia/compiled/v1.14/jl_uH8DC7OX0j/jl_iVWdIn" (ProcessExited(1)). OrdinaryDiffEqBDF Failed to precompile OrdinaryDiffEqBDF [6ad6398a-0878-4a85-9266-38940aa047c8] to "/home/pkgeval/.julia/compiled/v1.14/OrdinaryDiffEqBDF/jl_1EMDJV" (ProcessExited(1)). ┌ Error: Unexpected error: /tmp/jl_uH8DC7OX0j/done.log was not created, but precompilation exited └ @ Aqua ~/.julia/packages/Aqua/h1qD0/src/persistent_tasks.jl:120 Test Summary: | Pass Total Time Aqua | 10 10 24m09.8s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 243 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm12DenseMapBaseINS_8DenseMapIPKNS_5ValueENS_13MDAttachmentsENS_12DenseMapInfoIS4_vEENS_6detail12DenseMapPairIS4_S5_EEEES4_S5_S7_SA_E2atES4_ at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZNK4llvm11Instruction13getAAMetadataEv at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm14MemoryLocation3getEPKNS_8LoadInstE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm23MemoryDependenceResults30getSimplePointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm23MemoryDependenceResults24getPointerDependencyFromERKNS_14MemoryLocationEbNS_21ilist_iterator_w_bitsINS_12ilist_detail12node_optionsINS_11InstructionELb1ELb0EvLb1ENS_10BasicBlockEEELb0ELb0EEEPS8_PS7_PjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm23MemoryDependenceResults23getNonLocalInfoForBlockEPNS_11InstructionERKNS_14MemoryLocationEbPNS_10BasicBlockEPSt6vectorINS_16NonLocalDepEntryESaIS9_EEjRNS_14BatchAAResultsE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm23MemoryDependenceResults27getNonLocalPointerDepFromBBEPNS_11InstructionERKNS_12PHITransAddrERKNS_14MemoryLocationEbPNS_10BasicBlockERNS_15SmallVectorImplINS_17NonLocalDepResultEEERNS_13SmallDenseMapISA_PNS_5ValueELj16ENS_12DenseMapInfoISA_vEENS_6detail12DenseMapPairISA_SH_EEEEbb at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm23MemoryDependenceResults28getNonLocalPointerDependencyEPNS_11InstructionERNS_15SmallVectorImplINS_17NonLocalDepResultEEE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass19processNonLocalLoadEPNS_8LoadInstE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91:41 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) run at /source/src/pipeline.cpp:990:12 operator() at /source/src/jitlayers.cpp:1461:17 operator() at /source/src/jitlayers.cpp:1599:12 [inlined] optimizeModule at /source/src/jitlayers.cpp:2689:18 operator() at /source/src/jitlayers.cpp:1051:35 [inlined] CallImpl):: > at /source/usr/include/llvm/ADT/FunctionExtras.h:212:49 operator() at /source/usr/include/llvm/ADT/FunctionExtras.h:366:62 [inlined] operator() at /source/src/objcache.cpp:340:24 [inlined] get at /source/src/objcache.cpp:381:30 materialize at /source/src/jitlayers.cpp:1061:37 _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) dispatch at /source/src/julia-task-dispatcher.h:377:13 [inlined] dispatch at /source/src/julia-task-dispatcher.h:366:6 _ZN4llvm3orc16ExecutionSession12dispatchTaskESt10unique_ptrINS0_4TaskESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS0_17ExecutorSymbolDefENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM.so.22.1jl (unknown line) publishCIs at /source/src/jitlayers.cpp:2247:14 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:521:39 jl_compile_method_very_internal at /source/src/gf.c:4105:27 _jl_invoke at /source/src/gf.c:4582:16 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 make_reaction_system at /home/pkgeval/.julia/packages/Catalyst/2OTab/src/dsl.jl:276:0 (pc: 277) #make_rs_expr#256 at /home/pkgeval/.julia/packages/Catalyst/2OTab/src/dsl.jl:127:0 (pc: 7) make_rs_expr at /home/pkgeval/.julia/packages/Catalyst/2OTab/src/dsl.jl:126:0 (pc: 1) unknown function (ip: 0x7f1fd6398396) at (unknown file) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 @reaction_network at /home/pkgeval/.julia/packages/Catalyst/2OTab/src/dsl.jl:0:0 (pc: 15) unknown function (ip: 0x7f1fd6397f46) at (unknown file) _jl_invoke at /source/src/gf.c:4590:23 [inlined] jl_invoke_fromdispatch at /source/src/gf.c:4603:12 jl_invoke_julia_macro at /source/src/ast.c:1079:18 jl_expand_macros at /source/src/ast.c:1141:30 jl_expand_macros at /source/src/ast.c:1190:26 jl_expand_macros at /source/src/ast.c:1190:26 jl_expand_macros at /source/src/ast.c:1190:26 jl_fl_lower at /source/src/ast.c:1219:12 fl_lower at ./flfrontend.jl:23:0 (pc: 14) jfptr_fl_lower_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] ijl_lower at /source/src/ast.c:1287:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:597:31 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 eval_body at /source/src/interpreter.c:704:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 eval_body at /source/src/interpreter.c:712:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_eval_module_expr at /source/src/toplevel.c:266:5 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:669:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) jfptr_eval_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) include_string at ./loading.jl:3291:0 (pc: 140) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 _include at ./loading.jl:3353:0 (pc: 123) include at ./Base.jl:335:0 (pc: 1) IncludeInto at ./Base.jl:336:0 (pc: 2) jfptr_IncludeInto_1.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] do_call at /source/src/interpreter.c:123:26 eval_value at /source/src/interpreter.c:259:16 eval_stmt_value at /source/src/interpreter.c:194:23 [inlined] eval_body at /source/src/interpreter.c:829:21 jl_interpret_toplevel_thunk at /source/src/interpreter.c:1052:21 ijl_eval_thunk at /source/src/toplevel.c:772:18 jl_toplevel_eval_flex at /source/src/toplevel.c:716:26 jl_eval_toplevel_stmts at /source/src/toplevel.c:601:15 jl_toplevel_eval_flex at /source/src/toplevel.c:688:27 ijl_toplevel_eval at /source/src/toplevel.c:786:12 ijl_toplevel_eval_in at /source/src/toplevel.c:831:13 eval at ./boot.jl:618:0 (pc: 1) __script_entry_eval at ./client.jl:106:0 [inlined] exec_options at ./client.jl:350:0 (pc: 426) _start at ./client.jl:695:0 (pc: 217) jfptr__start_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] true_main at /source/src/jlapi.c:990:29 jl_repl_entrypoint at /source/src/jlapi.c:1157:15 main at /source/cli/loader_exe.c:117:15 unknown function (ip: 0x7f1fee4b0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404:0 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430:0 ijl_task_get_next at /source/src/scheduler.c:573:34 wait at ./task.jl:1652:0 (pc: 108) wait_forever at ./task.jl:1528:0 (pc: 4) jfptr_wait_forever_0.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4590:23 [inlined] ijl_apply_generic at /source/src/gf.c:4838:12 jl_apply at /source/src/julia.h:2535:12 [inlined] start_task at /source/src/task.c:1280:23 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000765aef77ebf0 Total snapshots: 387. Utilization: 0% ╎387 @Base/task.jl:1528 wait_forever() 386╎ 387 @Base/task.jl:? wait() [243] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PEtabTraining/GAvrd/test/curriculum.jl:88 jl_to_typeof at /source/src/julia.h:1157:12 [inlined] ijl_types_equal at /source/src/subtype.c:3927:9 jl_specializations_get_linfo_ at /source/src/gf.c:275:17 #specialize_method#6 at ./runtime_internals.jl:1966:0 [inlined] specialize_method at ./runtime_internals.jl:1953:0 [inlined] typeinf_edge at ./../usr/share/julia/Compiler/src/typeinfer.jl:1292:0 (pc: 28) abstract_call_method at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:799:0 (pc: 575) infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:194:0 (pc: 77) abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:369:0 (pc: 194) abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3082:0 (pc: 1830) abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3233:0 (pc: 345) PkgEval terminated after 2729.81s: test duration exceeded the time limit