Package evaluation to test BigRiverQTL on Julia 1.14.0-DEV.3128 (f573e2bf71*) started at 2026-09-07T00:03:59.367 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 15.37s ################################################################################ # Installation # Installing BigRiverQTL... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8f8ec94a] + BigRiverQTL v0.1.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.24.0 [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.30.1 [8f8ec94a] + BigRiverQTL v0.1.2 [042156b7] + BigRiverQTLPlots v0.2.3 [b8d15608] + BulkLMM v1.2.2 [336ed68f] + CSV v0.10.17 [944b1d66] + CodecZlib v0.7.9 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [a0c0ee7d] + DifferentiationInterface v0.7.21 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.17.0 [6a86dc24] + FiniteDiff v2.33.0 [a0844989] + Gamma v1.2.0 [34004b35] + HypergeometricFunctions v0.3.30 ⌅ [842dd82b] + InlineStrings v1.4.6 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.8.0 [b964fa9f] + LaTeXStrings v1.4.1 [d3d80556] + LineSearches v7.8.1 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v8.0.1 [77ba4419] + NaNMath v1.1.4 [429524aa] + Optim v2.3.1 [bac558e1] + OrderedCollections v2.0.1 [90014a1f] + PDMats v0.11.41 ⌅ [69de0a69] + Parsers v2.8.8 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [08abe8d2] + PrettyTables v3.4.8 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.8 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.5 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 ⌅ [892a3eda] + StringManipulation v0.5.0 [ec057cc2] + StructUtils v2.8.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.8+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.14s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 7.8 s ✓ BigRiverQTLPlots 11.1 s ✓ BigRiverQTL 2 dependencies successfully precompiled in 20 seconds. 246 already precompiled. Precompilation completed after 39.82s ################################################################################ # Testing # Testing BigRiverQTL Status `/tmp/jl_mL0Rfz/Project.toml` [8f8ec94a] BigRiverQTL v0.1.2 [042156b7] BigRiverQTLPlots v0.2.3 [b8d15608] BulkLMM v1.2.2 [336ed68f] CSV v0.10.17 [a93c6f00] DataFrames v1.8.2 [8bb1440f] DelimitedFiles v1.9.1 [682c06a0] JSON v1.8.0 [e1d29d7a] Missings v1.2.0 [91a5bcdd] Plots v1.41.7 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.5 [2913bbd2] StatsBase v0.34.13 [37e2e46d] LinearAlgebra v1.14.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_mL0Rfz/Manifest.toml` [47edcb42] ADTypes v1.24.0 [7d9f7c33] Accessors v0.1.45 [79e6a3ab] Adapt v4.7.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.30.1 [8f8ec94a] BigRiverQTL v0.1.2 [042156b7] BigRiverQTLPlots v0.2.3 [b8d15608] BulkLMM v1.2.2 [336ed68f] CSV v0.10.17 [944b1d66] CodecZlib v0.7.9 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.14 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.2.0 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.6 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [a0c0ee7d] DifferentiationInterface v0.7.21 [31c24e10] Distributions v0.25.131 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [c87230d0] FFMPEG v0.4.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.17.0 [6a86dc24] FiniteDiff v2.33.0 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [1fa38f19] Format v1.3.7 [28b8d3ca] GR v0.73.27 [a0844989] Gamma v1.2.0 [34004b35] HypergeometricFunctions v0.3.30 ⌅ [842dd82b] InlineStrings v1.4.6 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.8.0 [b964fa9f] LaTeXStrings v1.4.1 [23fbe1c1] Latexify v0.16.12 [d3d80556] LineSearches v7.8.1 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v8.0.1 [77ba4419] NaNMath v1.1.4 [429524aa] Optim v2.3.1 [bac558e1] OrderedCollections v2.0.1 [90014a1f] PDMats v0.11.41 ⌅ [69de0a69] Parsers v2.8.8 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.4 [91a5bcdd] Plots v1.41.7 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.4.8 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v3.0.8 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [992d4aef] Showoff v1.1.1 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.9.0 [860ef19b] StableRNGs v1.0.4 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.5 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.13 [4c63d2b9] StatsFuns v2.2.1 ⌅ [892a3eda] StringManipulation v0.5.0 [ec057cc2] StructUtils v2.8.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.14.0 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [1cfade01] UnicodeFun v0.4.1 [41fe7b60] Unzip v0.2.0 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.7+0 [ee1fde0b] Dbus_jll v1.16.2+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.8.3+0 ⌅ [b22a6f82] FFMPEG_jll v8.1.2+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.14.3+1 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.5.1+0 [d2c73de3] GR_jll v0.73.27+0 ⌅ [b0724c58] GettextRuntime_jll v0.22.4+0 [61579ee1] Ghostscript_jll v9.55.1+0 [7746bdde] Glib_jll v2.88.3+0 [3b182d85] Graphite2_jll v1.3.16+0 [2e76f6c2] HarfBuzz_jll v100.14003.0+0 [aacddb02] JpegTurbo_jll v3.2.0+1 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.1.0+0 [1d63c593] LLVMOpenMP_jll v22.1.7+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.42.0+0 [89763e89] Libtiff_jll v4.7.3+0 [38a345b3] Libuuid_jll v2.42.0+0 [e7412a2a] Ogg_jll v1.3.6+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.1+0 [36c8627f] Pango_jll v1.58.2+0 [30392449] Pixman_jll v0.46.4+0 [c0090381] Qt6Base_jll v6.10.2+2 [629bc702] Qt6Declarative_jll v6.10.2+2 [ce943373] Qt6ShaderTools_jll v6.10.2+1 [6de9746b] Qt6Svg_jll v6.10.2+0 [e99dba38] Qt6Wayland_jll v6.10.2+1 [f50d1b31] Rmath_jll v0.5.2+0 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.24.0+0 [ffd25f8a] XZ_jll v5.8.3+0 [f67eecfb] Xorg_libICE_jll v1.1.2+0 [c834827a] Xorg_libSM_jll v1.2.6+0 [4f6342f7] Xorg_libX11_jll v1.8.13+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.8+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.4+0 [d1454406] Xorg_libXinerama_jll v1.1.7+0 [ec84b674] Xorg_libXrandr_jll v1.5.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.19.0+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.2.0+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] Xorg_xcb_util_jll v0.4.1+0 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.47.0+2 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [35ca27e7] eudev_jll v3.2.14+0 ⌅ [214eeab7] fzf_jll v0.61.1+0 [a4ae2306] libaom_jll v3.14.1+0 [0ac62f75] libass_jll v0.17.5+0 [1183f4f0] libdecor_jll v0.2.2+0 [8e53e030] libdrm_jll v2.4.134+0 [2db6ffa8] libevdev_jll v1.13.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [36db933b] libinput_jll v1.28.1+0 [b53b4c65] libpng_jll v1.6.58+0 [9a156e7d] libva_jll v2.23.0+0 [f27f6e37] libvorbis_jll v1.3.8+0 [009596ad] mtdev_jll v1.1.7+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.2.0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.14.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.13.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] LibCURL_jll v8.21.0+0 [e37daf67] LibGit2_jll v1.9.7+0 [29816b5a] LibSSH2_jll v1.11.104+0 [14a3606d] MozillaCACerts_jll v2026.8.13 [4536629a] OpenBLAS_jll v0.3.34+0 [05823500] OpenLibm_jll v0.8.8+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.48.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed Test kinship dimensions: Test Passed Test diagonal: Test Passed Test diagonal: Test Passed ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: BC & BD │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: AC & AE & AD & AF │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: Presence of genotypes not encoded by dictionnary of the control file: H │ Not specified genetotype will be encoded as missing └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:131 ┌ Warning: No unit detected! └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:59 ┌ Warning: No sex information; assuming all female └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/export_to_type.jl:598 ┌ Warning: covar file not found in control file └ @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/io/io_helpers.jl:180 Testing plotting function: Error During Test at /home/pkgeval/.julia/packages/BigRiverQTL/LpNuC/test/plots_test.jl:5 Got exception outside of a @test ArgumentError: column name :Mb not found in the data frame Stacktrace: [1] lookupname(l::Dict{Symbol, Int64}, idx::Symbol) @ DataFrames ~/.julia/packages/DataFrames/0Y1g5/src/other/index.jl:431 [inlined] [2] getindex(x::DataFrames.Index, idx::Symbol) @ DataFrames ~/.julia/packages/DataFrames/0Y1g5/src/other/index.jl:440 [inlined] [3] getindex(df::DataFrame, ::Colon, col_ind::Symbol) @ DataFrames ~/.julia/packages/DataFrames/0Y1g5/src/dataframe/dataframe.jl:545 [4] get_plot_QTL_inputs(vLOD::Vector{Float64}, dfgInfo::DataFrame; chrColname::String, posColname::String) @ BigRiverQTLPlots ~/.julia/packages/BigRiverQTLPlots/og0IB/src/qtl/qtl_helpers.jl:165 [5] plot_QTL(vLOD::Vector{Float64}, dfgInfo::DataFrame; chrColname::String, posColname::String, thresholds::Vector{Float64}, kwargs::@Kwargs{mbColname::String}) @ BigRiverQTLPlots ~/.julia/packages/BigRiverQTLPlots/og0IB/src/qtl/plot_QTL.jl:38 [6] plot_QTL(scanresult::@NamedTuple{b::Vector{Float64}, sigma2_e::Float64, h2_null::Float64, lod::Vector{Float64}, L_perms::Matrix{Float64}}, dfgInfo::DataFrame; chrColname::String, posColname::String, significance::Vector{Any}, kwargs::@Kwargs{mbColname::String}) @ BigRiverQTLPlots ~/.julia/packages/BigRiverQTLPlots/og0IB/src/qtl/plot_QTL.jl:59 [7] plot_QTL(scanresult::@NamedTuple{b::Vector{Float64}, sigma2_e::Float64, h2_null::Float64, lod::Vector{Float64}, L_perms::Matrix{Float64}}, dfgInfo::Gmap; kwargs::@Kwargs{mbColname::String}) @ BigRiverQTL ~/.julia/packages/BigRiverQTL/LpNuC/src/plots/plots_qtl.jl:40 [inlined] [8] top-level scope @ ~/.julia/packages/BigRiverQTL/LpNuC/test/plots_test.jl:7 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [10] macro expansion @ ~/.julia/packages/BigRiverQTL/LpNuC/test/plots_test.jl:62 [inlined] Test Summary: | Pass Error Total Time BigRiverQTL | 68 1 69 5m12.6s calckinship() | 3 3 1.9s kinship_4way() | 3 3 0.0s kinship_gs() | 3 3 0.0s kinship_lin() | 3 3 0.0s kinship_man() | 3 3 0.0s kinship_std() | 3 3 0.0s Gmap Tests | 1 1 57.2s CrossType Tests | 1 1 0.0s Alleles Tests | 1 1 0.6s GenoType Tests | 2 2 0.3s GenoTranspose Tests | 1 1 0.0s Geno Tests | 2 2 33.1s Pmap Tests | 2 2 0.8s Pheno Tests | 3 3 6.9s Phenocov Tests | 2 2 1.0s CrossInfo Tests | 2 2 0.3s IsXChar Tests | 2 2 0.2s IsFemale Tests | 2 2 0.2s GeneticStudyData Test | 1 1 1.2s Encode Genotypes - Known Genotypes | 1 1 1.7s Encode Genotypes - Unknown Genotypes | 1 1 1.0s Encode Genotypes - All Unknown | 1 1 1.0s Testing get_geno_completecases function | 4 4 0.6s Testing summary_missing function | 2 2 4.9s Testing get_data_completecases function | 4 4 1m09.6s Testing select_marker function | 7 7 1.2s Testing select_sample function | 4 4 0.1s Testing gmap2df function | 2 2 0.1s Testing pmap2df function | 2 2 0.2s Testing plotting function | 1 1 1m32.9s RNG of the outermost testset: Random.Xoshiro(0xd0bbeac6dc6c336e, 0x4d66968cb594bf98, 0x2188e5440da7a3e1, 0xa80d8a595aa64fc0, 0xf8faf132bbfcd3db) ERROR: LoadError: Some tests did not pass: 68 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BigRiverQTL/LpNuC/test/runtests.jl:14 Testing failed after 352.16s ERROR: LoadError: Package BigRiverQTL errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 447.37s: package tests unexpectedly errored