Package evaluation to test BurrowsWheelerAligner on Julia 1.14.0-DEV.3106 (9d314127b9*) started at 2026-09-03T16:38:55.492


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 16.06s


################################################################################
# Installation
#

Installing BurrowsWheelerAligner...
   Resolving package versions...
   Installed StringViews ─────────── v2.0.1
   Installed BWA_jll ─────────────── v0.7.17+1
   Installed CodecZlib ───────────── v0.7.9
   Installed DataStructures ──────── v0.18.22
   Installed OrderedCollections ──── v1.8.2
   Installed TranscodingStreams ──── v0.9.13
   Installed Compat ──────────────── v4.18.1
   Installed Indexes ─────────────── v0.1.3
   Installed GenomicFeatures ─────── v2.1.0
   Installed Twiddle ─────────────── v1.1.2
   Installed BioSymbols ──────────── v5.2.0
   Installed BioGenerics ─────────── v0.1.5
   Installed BurrowsWheelerAligner ─ v0.1.4
   Installed BioAlignments ───────── v3.1.0
   Installed XAM ─────────────────── v0.4.2
   Installed PrecompileTools ─────── v1.3.4
   Installed FASTX ───────────────── v2.2.0
   Installed BGZFStreams ─────────── v0.3.2
   Installed JLLWrappers ─────────── v1.8.0
   Installed Automa ──────────────── v1.2.0
   Installed Preferences ─────────── v1.5.2
   Installed IntervalTrees ───────── v1.1.0
   Installed BioSequences ────────── v3.5.2
  Installing 1 artifacts
   Installed artifact BWA 460.6 KiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [231d3afb] + BurrowsWheelerAligner v0.1.4
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [67c07d97] + Automa v1.2.0
  [28d598bf] + BGZFStreams v0.3.2
  [00701ae9] + BioAlignments v3.1.0
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.2
  [3c28c6f8] + BioSymbols v5.2.0
  [231d3afb] + BurrowsWheelerAligner v0.1.4
  [944b1d66] + CodecZlib v0.7.9
  [34da2185] + Compat v4.18.1
⌅ [864edb3b] + DataStructures v0.18.22
  [c2308a5c] + FASTX v2.2.0
⌅ [899a7d2d] + GenomicFeatures v2.1.0
⌅ [4ffb77ac] + Indexes v0.1.3
  [524e6230] + IntervalTrees v1.1.0
  [692b3bcd] + JLLWrappers v1.8.0
⌅ [bac558e1] + OrderedCollections v1.8.2
  [aea7be01] + PrecompileTools v1.3.4
  [21216c6a] + Preferences v1.5.2
  [354b36f9] + StringViews v2.0.1
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [7200193e] + Twiddle v1.1.2
  [d759349c] + XAM v0.4.2
  [f8ebc3b1] + BWA_jll v0.7.17+1
  [0dad84c5] + ArgTools v1.2.0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.14.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.14.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.13.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0
  [deac9b47] + LibCURL_jll v8.21.0+0
  [e37daf67] + LibGit2_jll v1.9.7+0
  [29816b5a] + LibSSH2_jll v1.11.104+0
  [14a3606d] + MozillaCACerts_jll v2026.8.13
  [4536629a] + OpenBLAS_jll v0.3.34+0
  [458c3c95] + OpenSSL_jll v3.5.8+0
  [efcefdf7] + PCRE2_jll v10.48.0+0
  [83775a58] + Zlib_jll v1.3.2+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.70.0+0
  [3f19e933] + p7zip_jll v17.8.2+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.08s


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# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling project...
   4.4 s  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

Precompiling package dependencies...
Precompiling project...
   1.6 s  ✓ OrderedCollections
   0.6 s  ✓ Twiddle
   0.6 s  ✓ StringViews
   1.2 s  ✓ IntervalTrees
   1.0 s  ✓ Compat
   1.5 s  ✓ Preferences
   1.9 s  ✓ TranscodingStreams
   0.5 s  ✓ Compat → CompatLinearAlgebraExt
   1.5 s  ✓ JLLWrappers
   1.0 s  ✓ PrecompileTools
   1.4 s  ✓ BioGenerics
   1.4 s  ✓ CodecZlib
   3.7 s  ✓ DataStructures
   1.7 s  ✓ BWA_jll
   3.0 s  ✓ BioSymbols
  17.1 s  ✓ Automa
   1.5 s  ✓ BGZFStreams
   1.9 s  ✓ GenomicFeatures
   9.2 s  ✓ BioSequences
  17.0 s  ✓ FASTX
   1.6 s  ✓ Indexes
   3.9 s  ✓ BioAlignments
   2.0 s  ✓ FASTX → BioSequencesExt
  13.7 s  ✓ XAM
   3.0 s  ✓ BurrowsWheelerAligner
  25 dependencies successfully precompiled in 93 seconds. 30 already precompiled.

Precompilation completed after 113.26s


################################################################################
# Testing
#

     Testing BurrowsWheelerAligner
      Status `/tmp/jl_jrvRYR/Project.toml`
  [231d3afb] BurrowsWheelerAligner v0.1.4
  [c2308a5c] FASTX v2.2.0
  [d759349c] XAM v0.4.2
  [f8ebc3b1] BWA_jll v0.7.17+1
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_jrvRYR/Manifest.toml`
  [67c07d97] Automa v1.2.0
  [28d598bf] BGZFStreams v0.3.2
  [00701ae9] BioAlignments v3.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.2
  [3c28c6f8] BioSymbols v5.2.0
  [231d3afb] BurrowsWheelerAligner v0.1.4
  [944b1d66] CodecZlib v0.7.9
  [34da2185] Compat v4.18.1
⌅ [864edb3b] DataStructures v0.18.22
  [c2308a5c] FASTX v2.2.0
⌅ [899a7d2d] GenomicFeatures v2.1.0
⌅ [4ffb77ac] Indexes v0.1.3
  [524e6230] IntervalTrees v1.1.0
  [692b3bcd] JLLWrappers v1.8.0
⌅ [bac558e1] OrderedCollections v1.8.2
  [aea7be01] PrecompileTools v1.3.4
  [21216c6a] Preferences v1.5.2
  [354b36f9] StringViews v2.0.1
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [7200193e] Twiddle v1.1.2
  [d759349c] XAM v0.4.2
  [f8ebc3b1] BWA_jll v0.7.17+1
  [0dad84c5] ArgTools v1.2.0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.14.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.14.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.13.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.5.7+0
  [deac9b47] LibCURL_jll v8.21.0+0
  [e37daf67] LibGit2_jll v1.9.7+0
  [29816b5a] LibSSH2_jll v1.11.104+0
  [14a3606d] MozillaCACerts_jll v2026.8.13
  [4536629a] OpenBLAS_jll v0.3.34+0
  [458c3c95] OpenSSL_jll v3.5.8+0
  [efcefdf7] PCRE2_jll v10.48.0+0
  [83775a58] Zlib_jll v1.3.2+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.70.0+0
  [3f19e933] p7zip_jll v17.8.2+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...

BurrowsWheelerAligner.jl: Test Failed at /home/pkgeval/.julia/packages/BurrowsWheelerAligner/RB6Ad/test/runtests.jl:17
  Expression: BWA.cigar(aln) == "70M"
   Evaluated: "26329445M" == "70M"
  Stacktrace:
   [1] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined]
   [2] macro expansion
     @ ~/.julia/packages/BurrowsWheelerAligner/RB6Ad/test/runtests.jl:17 [inlined]
   [3] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined]
   [4] top-level scope
     @ ~/.julia/packages/BurrowsWheelerAligner/RB6Ad/test/runtests.jl:8
  2.510830 seconds (320.04 k allocations: 338.739 MiB, 3.94% gc time)
Test Summary:            | Pass  Fail  Total   Time
BurrowsWheelerAligner.jl |   25     1     26  29.6s
RNG of the outermost testset: Xoshiro(0xc9dc27a154c90926, 0xe955cb1e06a6f174, 0xba783fd5aa553466, 0xe6e043b2f1ac3803, 0x7a58a20c581d6b95)
ERROR: LoadError: Some tests did not pass: 25 passed, 1 failed, 0 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/BurrowsWheelerAligner/RB6Ad/test/runtests.jl:7

Testing failed after 48.81s

ERROR: LoadError: Package BurrowsWheelerAligner errored during testing
Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
   @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3298
 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587
 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd})
   @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined]
 [7] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:223
in expression starting at /PkgEval.jl/scripts/evaluate.jl:214

PkgEval failed after 220.47s: package has test failures