Package evaluation to test TMLE on Julia 1.14.0-DEV.3081 (21a70e450d*) started at 2026-09-02T07:50:31.767 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 28.49s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Installed LearnAPI ──────────────────── v1.0.1 Installed CommonSolve ───────────────── v0.2.14 Installed GLM ───────────────────────── v1.9.5 Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed Rmath_jll ─────────────────── v0.5.2+0 Installed CompositionsBase ──────────── v0.1.2 Installed PrettyPrinting ────────────── v0.4.3 Installed DataStructures ────────────── v0.19.6 Installed MacroTools ────────────────── v0.5.16 Installed JLD2 ──────────────────────── v0.6.6 Installed Adapt ─────────────────────── v4.7.0 Installed FillArrays ────────────────── v1.17.0 Installed StatsModels ───────────────── v0.7.10 Installed HypergeometricFunctions ───── v0.3.30 Installed MetaGraphsNext ────────────── v0.7.5 Installed InlineStrings ─────────────── v1.4.5 Installed RelocatableFolders ────────── v1.0.1 Installed ConstructionBase ──────────── v1.6.0 Installed ScientificTypes ───────────── v3.1.1 Installed StatsBase ─────────────────── v0.34.13 Installed DelimitedFiles ────────────── v1.9.1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed AliasTables ───────────────── v1.1.3 Installed OrderedCollections ────────── v1.8.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed Compat ────────────────────── v4.18.1 Installed HypothesisTests ───────────── v0.11.8 Installed RecipesBase ───────────────── v1.3.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed NNlib ─────────────────────── v0.9.45 Installed Combinatorics ─────────────── v1.1.0 Installed Statistics ────────────────── v1.11.4 Installed FileIO ────────────────────── v1.20.0 Installed DataValueInterfaces ───────── v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed StatsAPI ──────────────────── v1.8.0 Installed InvertedIndices ───────────── v1.3.1 Installed Atomix ────────────────────── v1.1.3 Installed TMLE ──────────────────────── v0.20.4 Installed PrecompileTools ───────────── v1.3.4 Installed ProgressMeter ─────────────── v1.11.0 Installed MLCore ────────────────────── v1.1.0 Installed SentinelArrays ────────────── v1.4.10 Installed MLUtils ───────────────────── v0.4.13 Installed StaticArrays ──────────────── v1.9.19 Installed CodeTracking ──────────────── v3.0.2 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed StatisticalMeasures ───────── v0.2.1 Installed ChainRulesCore ────────────── v1.26.1 Installed StringManipulation ────────── v0.4.7 Installed SimpleTraits ──────────────── v0.9.6 Installed Distances ─────────────────── v0.10.12 Installed GPUArraysCore ─────────────── v0.2.0 Installed QuadGK ────────────────────── v2.11.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed ChunkCodecLibZlib ─────────── v1.1.0 Installed ColorTypes ────────────────── v0.12.1 Installed StatisticalMeasuresBase ───── v0.1.4 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed CategoricalDistributions ──── v0.1.15 Installed ComputationalResources ────── v0.3.2 Installed Roots ─────────────────────── v3.0.7 Installed KernelAbstractions ────────── v0.9.42 Installed PrettyTables ──────────────── v2.4.0 Installed Distributions ─────────────── v0.25.131 Installed Gamma ─────────────────────── v1.1.0 Installed MLJBase ───────────────────── v1.9.2 Installed UnsafeAtomics ─────────────── v0.3.2 Installed StatsFuns ─────────────────── v2.2.1 Installed Tables ────────────────────── v1.14.0 Installed AutoHashEquals ────────────── v2.2.0 Installed Rmath ─────────────────────── v0.9.0 Installed ScopedValues ──────────────── v1.6.2 Installed Parameters ────────────────── v0.12.3 Installed SpecialFunctions ──────────── v2.9.0 Installed PtrArrays ─────────────────── v1.4.0 Installed InverseFunctions ──────────── v0.1.17 Installed Scratch ───────────────────── v1.3.0 Installed DataFrames ────────────────── v1.8.2 Installed FixedPointNumbers ─────────── v0.8.6 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed ShowCases ─────────────────── v0.1.0 Installed ScientificTypesBase ───────── v3.1.0 Installed JLLWrappers ───────────────── v1.8.0 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.5.2 Installed ChunkCodecCore ────────────── v1.0.2 Installed Crayons ───────────────────── v4.2.0 Installed LaTeXStrings ──────────────── v1.4.1 Installed PDMats ────────────────────── v0.11.41 Installed SortingAlgorithms ─────────── v1.2.3 Installed BFloat16s ─────────────────── v0.6.1 Installed MLJModels ─────────────────── v0.17.9 Installed Graphs ────────────────────── v1.14.0 Installed MLJGLMInterface ───────────── v0.3.7 Installed Accessors ─────────────────── v0.1.45 Installed UnPack ────────────────────── v1.0.2 Installed StatisticalTraits ─────────── v3.5.0 Installed CategoricalArrays ─────────── v0.10.9 Installed Inflate ───────────────────── v0.1.5 Installed MLJModelInterface ─────────── v1.12.1 Installed DocStringExtensions ───────── v0.9.5 Installing 2 artifacts Installed artifact Rmath 111.3 KiB Installed artifact OpenSpecFun 105.4 KiB Updating `~/.julia/environments/v1.14/Project.toml` [8afdd2fb] + TMLE v0.20.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.45 [79e6a3ab] + Adapt v4.7.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.3 [15f4f7f2] + AutoHashEquals v2.2.0 [ab4f0b2a] + BFloat16s v0.6.1 ⌅ [324d7699] + CategoricalArrays v0.10.9 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [d360d2e6] + ChainRulesCore v1.26.1 [0b6fb165] + ChunkCodecCore v1.0.2 [4c0bbee4] + ChunkCodecLibZlib v1.1.0 [55437552] + ChunkCodecLibZstd v1.0.0 [da1fd8a2] + CodeTracking v3.0.2 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.14 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.2.0 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.6 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.131 [ffbed154] + DocStringExtensions v0.9.5 [5789e2e9] + FileIO v1.20.0 [1a297f60] + FillArrays v1.17.0 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [38e38edf] + GLM v1.9.5 [46192b85] + GPUArraysCore v0.2.0 ⌃ [a0844989] + Gamma v1.1.0 [86223c79] + Graphs v1.14.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.30 [09f84164] + HypothesisTests v0.11.8 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.6 [692b3bcd] + JLLWrappers v1.8.0 [63c18a36] + KernelAbstractions v0.9.42 [b964fa9f] + LaTeXStrings v1.4.1 ⌅ [92ad9a40] + LearnAPI v1.0.1 ⌅ [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.1.0 ⌃ [a7f614a8] + MLJBase v1.9.2 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.12.1 ⌅ [d491faf4] + MLJModels v0.17.9 [f1d291b0] + MLUtils v0.4.13 [1914dd2f] + MacroTools v0.5.16 ⌅ [fa8bd995] + MetaGraphsNext v0.7.5 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.45 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.41 ⌅ [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [54e16d92] + PrettyPrinting v0.4.3 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v3.0.7 ⌃ [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.1.0 [7e506255] + ScopedValues v1.6.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.9.0 [90137ffa] + StaticArrays v1.9.19 [1e83bf80] + StaticArraysCore v1.4.4 ⌅ [a19d573c] + StatisticalMeasures v0.2.1 [c062fc1d] + StatisticalMeasuresBase v0.1.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.4 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.13 [4c63d2b9] + StatsFuns v2.2.1 [3eaba693] + StatsModels v0.7.10 ⌅ [892a3eda] + StringManipulation v0.4.7 [8afdd2fb] + TMLE v0.20.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.14.0 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.2+0 [0dad84c5] + ArgTools v1.2.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.12.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.14.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.13.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.5.7+0 [deac9b47] + LibCURL_jll v8.21.0+0 [e37daf67] + LibGit2_jll v1.9.7+0 [29816b5a] + LibSSH2_jll v1.11.104+0 [14a3606d] + MozillaCACerts_jll v2026.8.13 [4536629a] + OpenBLAS_jll v0.3.34+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.8+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.2+0 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.70.0+0 [3f19e933] + p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 4.6 s ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompiling project... 3.4 s ✓ MacroTools 1.6 s ✓ InlineStrings 0.7 s ✓ Reexport 0.7 s ✓ ConstructionBase 2.0 s ✓ IrrationalConstants 0.5 s ✓ DataValueInterfaces 0.5 s ✓ StatsAPI 2.6 s ✓ LinearMaps 0.6 s ✓ CEnum 1.7 s ✓ Combinatorics 0.7 s ✓ Inflate 0.8 s ✓ TranscodingStreams 0.5 s ✓ LaTeXStrings 0.7 s ✓ ChunkCodecCore 0.8 s ✓ Statistics 0.7 s ✓ StaticArraysCore 0.7 s ✓ StableRNGs 0.5 s ✓ IfElse 0.8 s ✓ AutoHashEquals 0.5 s ✓ PtrArrays 0.6 s ✓ NamedTupleTools 0.6 s ✓ ManualMemory 0.7 s ✓ Adapt 1.1 s ✓ PositiveFactorizations 0.6 s ✓ DataAPI 0.5 s ✓ RealDot 3.0 s ✓ UnsafeAtomics 1.1 s ✓ ShowCases 0.6 s ✓ InvertedIndices 0.6 s ✓ InverseFunctions 0.5 s ✓ CompositionsBase 0.7 s ✓ ShiftedArrays 0.9 s ✓ AbstractTrees 0.7 s ✓ AbstractFFTs 1.1 s ✓ PrettyPrinting 0.5 s ✓ EnumX 0.7 s ✓ WorkerUtilities 0.7 s ✓ ComputationalResources 2.5 s ✓ FillArrays 0.7 s ✓ UnPack 1.0 s ✓ LearnAPI 1.1 s ✓ OrderedCollections 0.6 s ✓ HashArrayMappedTries 0.9 s ✓ DocStringExtensions 1.0 s ✓ Gamma 0.5 s ✓ SIMDTypes 0.5 s ✓ IteratorInterfaceExtensions 1.9 s ✓ Crayons 0.7 s ✓ NaNMath 0.7 s ✓ Requires 0.8 s ✓ BFloat16s 2.2 s ✓ ProgressMeter 0.7 s ✓ DelimitedFiles 1.1 s ✓ Scratch 1.8 s ✓ SentinelArrays 1.9 s ✓ StructTypes 1.4 s ✓ CpuId 2.2 s ✓ PDMats 1.5 s ✓ SparseInverseSubset 0.8 s ✓ Compat 1.0 s ✓ ScientificTypesBase 1.9 s ✓ PrecompileTools 2.9 s ✓ CodeTracking 2.0 s ✓ Rmath_jll 1.5 s ✓ OpenSpecFun_jll 1.3 s ✓ LLVMOpenMP_jll 1.3 s ✓ Libiconv_jll 1.0 s ✓ CommonSubexpressions 3.4 s ✓ IRTools 2.3 s ✓ SimpleTraits 0.7 s ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1.9 s ✓ LinearMaps → LinearMapsSparseArraysExt 0.8 s ✓ CodecZlib 0.7 s ✓ ChunkCodecLibZlib 0.7 s ✓ ChunkCodecLibZstd 1.6 s ✓ Statistics → SparseArraysExt 2.1 s ✓ FixedPointNumbers 1.2 s ✓ Distances 0.5 s ✓ LinearMaps → LinearMapsStatisticsExt 0.6 s ✓ DiffResults 0.9 s ✓ AliasTables 1.5 s ✓ ThreadingUtilities 0.8 s ✓ ArrayInterface 1.5 s ✓ Adapt → AdaptSparseArraysExt 0.7 s ✓ GPUArraysCore 0.7 s ✓ Missings 0.7 s ✓ PooledArrays 0.6 s ✓ Atomix 0.9 s ✓ InverseFunctions → InverseFunctionsDatesExt 1.6 s ✓ InverseFunctions → InverseFunctionsTestExt 0.5 s ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3.2 s ✓ AbstractFFTs → AbstractFFTsTestExt 1.9 s ✓ FillArrays → FillArraysSparseArraysExt 0.9 s ✓ FillArrays → FillArraysStatisticsExt 0.6 s ✓ Parameters 3.3 s ✓ DataStructures 0.6 s ✓ ScopedValues 1.1 s ✓ LogExpFunctions 1.7 s ✓ HypergeometricFunctions 0.5 s ✓ TableTraits 7.0 s ✓ FileIO 1.2 s ✓ RelocatableFolders 1.8 s ✓ FillArrays → FillArraysPDMatsExt 0.5 s ✓ Compat → CompatLinearAlgebraExt 1.1 s ✓ StatisticalTraits 5.8 s ✓ StringManipulation 1.6 s ✓ CommonSolve 13.0 s ✓ StaticArrays 1.4 s ✓ SciMLPublic 1.3 s ✓ CommonWorldInvalidations 3.5 s ✓ RecipesBase 1.8 s ✓ ADTypes 10.2 s ✓ Parsers 1.5 s ✓ Rmath 1.1 s ✓ XGBoost_jll 5.0 s ✓ XGBoost_GPU_jll 1.0 s ✓ StringEncodings 1.7 s ✓ Setfield 2.5 s ✓ ColorTypes 1.4 s ✓ Distances → DistancesSparseArraysExt 0.9 s ✓ ArrayInterface → ArrayInterfaceFillArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1.7 s ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 0.5 s ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 3.5 s ✓ CategoricalArrays 3.8 s ✓ Accessors 0.8 s ✓ SortingAlgorithms 1.8 s ✓ QuadGK 0.6 s ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 6.2 s ✓ SpecialFunctions 1.8 s ✓ Tables 46.7 s ✓ JLD2 2.0 s ✓ ChainRulesCore 1.7 s ✓ FilePathsBase 3.2 s ✓ MLJModelInterface 2.9 s ✓ ArnoldiMethod 1.4 s ✓ StaticArrays → StaticArraysStatisticsExt 1.4 s ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1.4 s ✓ Adapt → AdaptStaticArraysExt 2.0 s ✓ FillArrays → FillArraysStaticArraysExt 1.6 s ✓ Static 4.1 s ✓ IterativeSolvers 0.8 s ✓ ADTypes → ADTypesConstructionBaseExt 2.1 s ✓ DifferentiationInterface 14.3 s ✓ JSON3 4.1 s ✓ JSON 0.8 s ✓ InlineStrings → ParsersExt 2.2 s ✓ YAML 1.1 s ✓ ColorTypes → StyledStringsExt 1.1 s ✓ FiniteDiff 2.3 s ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 2.1 s ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1.5 s ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1.5 s ✓ Accessors → StaticArraysExt 1.7 s ✓ Accessors → TestExt 2.3 s ✓ Accessors → LinearAlgebraExt 4.6 s ✓ StatsBase 1.1 s ✓ DiffRules 2.1 s ✓ StatsFuns 1.5 s ✓ StructArrays 1.3 s ✓ TableOperations 2.4 s ✓ MLCore 25.9 s ✓ PrettyTables 5.1 s ✓ JLD2 → UnPackExt 1.7 s ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2.2 s ✓ ZygoteRules 1.1 s ✓ LinearMaps → LinearMapsChainRulesCoreExt 0.6 s ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 0.6 s ✓ Distances → DistancesChainRulesCoreExt 0.6 s ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2.6 s ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1.4 s ✓ StaticArrays → StaticArraysChainRulesCoreExt 1.0 s ✓ ADTypes → ADTypesChainRulesCoreExt 3.1 s ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2.7 s ✓ FilePathsBase → FilePathsBaseTestExt 1.2 s ✓ FilePathsBase → FilePathsBaseMmapExt 9.1 s ✓ Graphs 7.3 s ✓ KernelAbstractions 0.8 s ✓ BitTwiddlingConvenienceFunctions 2.8 s ✓ CPUSummary 3.0 s ✓ StaticArrayInterface 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 1.3 s ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1.8 s ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 0.9 s ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1.7 s ✓ CategoricalArrays → CategoricalArraysJSONExt 2.2 s ✓ WeakRefStrings 1.3 s ✓ FiniteDiff → FiniteDiffStaticArraysExt 1.4 s ✓ FiniteDiff → FiniteDiffSparseArraysExt 1.1 s ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5.2 s ✓ Roots 1.7 s ✓ PDMats → StatsBaseExt 6.7 s ✓ ForwardDiff 3.1 s ✓ StatsFuns → StatsFunsChainRulesCoreExt 1.0 s ✓ StatsFuns → StatsFunsInverseFunctionsExt 5.2 s ✓ StatsModels 1.5 s ✓ StructArrays → StructArraysSparseArraysExt 0.7 s ✓ StructArrays → StructArraysLinearAlgebraExt 0.7 s ✓ StructArrays → StructArraysAdaptExt 1.3 s ✓ StructArrays → StructArraysStaticArraysExt 1.1 s ✓ Accessors → StructArraysExt 74.0 s ✓ DataFrames 8.8 s ✓ MetaGraphsNext 3.0 s ✓ KernelAbstractions → SparseArraysExt 1.9 s ✓ KernelAbstractions → LinearAlgebraExt 2.2 s ✓ StructArrays → StructArraysGPUArraysCoreExt 1.8 s ✓ PolyesterWeave 1.5 s ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 0.9 s ✓ CloseOpenIntervals 1.1 s ✓ LayoutPointers 26.7 s ✓ CSV 1.3 s ✓ NLSolversBase 1.0 s ✓ Roots → RootsChainRulesCoreExt 1.8 s ✓ ForwardDiff → ForwardDiffStaticArraysExt 1.4 s ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1.1 s ✓ Roots → RootsForwardDiffExt 10.1 s ✓ Distributions 13.1 s ✓ ChainRules 13.9 s ✓ NNlib 2.5 s ✓ StrideArraysCore 1.7 s ✓ LineSearches 7.3 s ✓ GLM 5.0 s ✓ Distributions → DistributionsTestExt 5.1 s ✓ Distributions → DistributionsChainRulesCoreExt 6.7 s ✓ HypothesisTests 7.7 s ✓ CausalTables 6.7 s ✓ ScientificTypes 74.4 s ✓ Zygote 2.8 s ✓ ArrayInterface → ArrayInterfaceChainRulesExt 2.3 s ✓ NNlib → NNlibSpecialFunctionsExt 2.5 s ✓ NNlib → NNlibForwardDiffExt 11.5 s ✓ MLUtils 2.4 s ✓ Polyester 5.9 s ✓ Optim 6.1 s ✓ MLJGLMInterface 6.1 s ✓ CategoricalDistributions 7.5 s ✓ Zygote → ZygoteDistancesExt 5.7 s ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 17.6 s ✓ StatisticalMeasuresBase 3.5 s ✓ SparseMatricesCSR 8.4 s ✓ MLJLinearModels 20.0 s ✓ MLJModels 37.1 s ✓ StatisticalMeasures 16.5 s ✓ MLJBase 6.6 s ✓ XGBoost 10.6 s ✓ StatisticalMeasures → ScientificTypesExt 10.5 s ✓ MLJBase → DefaultMeasuresExt 8.7 s ✓ MLJXGBoostInterface 30.0 s ✓ TMLE 22.8 s ✓ TMLE → YAMLExt 23.0 s ✓ TMLE → JSONExt 23.7 s ✓ TMLE → CausalTablesExt 28.3 s ✓ TMLE → DifferentiationInterfaceExt 253 dependencies successfully precompiled in 1038 seconds. 45 already precompiled. Precompilation completed after 1052.58s ################################################################################ # Testing # Testing TMLE Status `/tmp/jl_bUxCLV/Project.toml` [336ed68f] CSV v0.10.17 ⌅ [324d7699] CategoricalArrays v0.10.9 [6af48e0c] CausalTables v1.3.4 [861a8166] Combinatorics v1.1.0 [a93c6f00] DataFrames v1.8.2 [a0c0ee7d] DifferentiationInterface v0.7.21 [31c24e10] Distributions v0.25.131 [09f84164] HypothesisTests v0.11.8 ⌃ [682c06a0] JSON v0.21.4 ⌅ [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [a7f614a8] MLJBase v1.9.2 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.3 ⌅ [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.13 ⌅ [bac558e1] OrderedCollections v1.8.2 [860ef19b] StableRNGs v1.0.4 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [10745b16] Statistics v1.11.4 [2913bbd2] StatsBase v0.34.13 [8afdd2fb] TMLE v0.20.4 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.14.0 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.13 [9a3f8284] 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v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.8+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.2+0 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.70.0+0 [3f19e933] p7zip_jll v17.8.2+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Info Packages marked with [deprecated] are no longer maintained. Testing Running tests... Test Summary: | Pass Total Time Test expected_value | 3 3 1m13.2s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 14.4s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 29.1s Test Summary: | Pass Total Time Test selectcols | 5 5 0.8s Test Summary: | Pass Total Time supervised_learner_supports_weights | 7 7 3.2s Test Summary: | Pass Total Time Test check_inputs | 4 4 5.4s Test Summary: | Pass Total Time Test get_fluctuation_dataset | 6 6 7.6s Test Summary: | Pass Total Time Test choose_initial_dataset | 4 4 0.1s Test Summary: | Pass Total Time Test SCM | 17 17 5.5s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.3s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 3.7s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.2s Test Summary: | Pass Total Time Test ConditionalDistribution | 4 4 0.3s Test Summary: | Pass Total Time Test CMRelevantFactors | 3 3 0.4s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 7 7 6.5s [ Info: Estimating: P₀(Y | X₁, X₂) [ Info: Estimating: P₀(Y | X₁, X₂) Test Summary: | Pass Total Time fit_mlj_model supports weights | 4 4 1m18.3s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: binary outcome | 9 9 14.1s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: continuous outcome | 7 7 14.5s [ Info: Estimating: P₀(Y | X₁, X₂) ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Core.TypeEgal{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::GLM.LogitLink; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Float64}}}) at statsmodel.jl:88 └ @ StatsModels ~/.julia/packages/StatsModels/OasXV/src/statsmodel.jl:88 ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Core.TypeEgal{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::GLM.LogitLink; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Int64}}}) at statsmodel.jl:88 └ @ StatsModels ~/.julia/packages/StatsModels/OasXV/src/statsmodel.jl:88 Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: binary outcome with prevalence weights | 4 4 8.8s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Binary outcome | 13 13 14.8s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Core.TypeEgal{GLM.LinearModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, data::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Float64}}, args::Nothing; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{dropcollinear::Bool, wts::Vector{Float64}}}) at statsmodel.jl:88 └ @ StatsModels ~/.julia/packages/StatsModels/OasXV/src/statsmodel.jl:88 Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Continuous outcome | 7 7 1.1s [ Info: Estimating: P₀(Y | X₁, X₂) Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: binary outcome with prevalence weights | 4 4 0.5s Test Summary: | Pass Total Time Test Conditional Distribution with no parents fits a marginal | 3 3 1.8s Test Summary: | Pass Total Time Test nomissing | 5 5 5.3s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Core.TypeEgal{GLM.LinearModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term}}, data::@NamedTuple{covariate::Vector{Float64}, y::Vector{Float64}}, args::Nothing; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{dropcollinear::Bool, wts::Vector{Float64}}}) at statsmodel.jl:88 └ @ StatsModels ~/.julia/packages/StatsModels/OasXV/src/statsmodel.jl:88 Test Summary: | Pass Total Time Test estimation with missing values and ordered factor treatment | 2 2 1m02.5s Test Summary: | Pass Total Time Test cov | 2 2 2.4s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Core.TypeEgal{GLM.LinearModel}, f::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term}}, data::@NamedTuple{covariate::Vector{Float64}, y::Vector{Float64}}, args::Nothing; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{dropcollinear::Bool, wts::Vector{Float64}}}) at statsmodel.jl:88 └ @ StatsModels ~/.julia/packages/StatsModels/OasXV/src/statsmodel.jl:88 Test Summary: | Pass Total Time Test composition CM(1) - CM(0) = ATE(1,0) | 8 8 1m51.4s Test Summary: | Pass Total Time Test compose multidimensional function | 8 8 6.9s Test Summary: | Pass Total Time Test Joint Interaction | 19 19 33.7s Test Summary: | Pass Total Time Test CausalStratifiedCV | 8 8 5.0s Test Summary: | Pass Total Time Test StatisticalCMCompositeEstimand | 10 10 7.7s Test Summary: | Pass Total Time Test standardization of StatisticalCMCompositeEstimand | 10 10 2.8s Test Summary: | Pass Total Time Test structs are concrete types | 3 3 0.0s Test Summary: | Pass Total Time Test dictionary conversion | 8 8 8.7s Test Summary: | Pass Total Time Test control_case_settings | 6 6 8.5s Test Summary: | Pass Total Time Test unique_treatment_values | 2 2 19.6s Test Summary: | Pass Total Time factorialEstimand errors | 2 2 3.1s Test Summary: | Pass Total Time Test factorial CM | 2 2 5.7s Test Summary: | Pass Total Time Test factorial ATE | 4 4 16.1s Test Summary: | Pass Total Time Test factorial AIE | 3 3 4.1s Test Summary: | Pass Total Time Test factorialEstimands | 2 2 0.1s Test Summary: | Pass Total Time Test ps_lower_bound | 5 5 0.1s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 1 treatment | 4 4 16.6s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 2 treatments | 2 2 0.6s Test Summary: | Pass Total Time Test compute_offset, clever_covariate_and_weights: 3 treatments | 2 2 18.4s Test Summary: | Pass Total Time Test gradient_and_plugin_estimate | 5 5 24.3s Test Fluctuation with 1 Treatments: Test Failed at /home/pkgeval/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:45 Expression: counterfactual_cache.signs == [1.0, -1.0] Evaluated: Any[-1.0, 1.0] == [1.0, -1.0] Stacktrace: [1] top-level scope @ ~/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:12 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:45 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Test Fluctuation with 1 Treatments: Test Failed at /home/pkgeval/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:46 Expression: counterfactual_cache.covariates == [[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [-1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0]] Evaluated: Any[[-1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0], [1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0]] == [[1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0], [-1.0, -1.0, -1.0, -1.0, -1.0, -1.0, -1.0]] Stacktrace: [1] top-level scope @ ~/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:12 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2247 [inlined] [3] macro expansion @ ~/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:46 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:784 [inlined] Test Summary: | Pass Fail Total Time Test Fluctuation with 1 Treatments | 19 2 21 25.6s RNG of the outermost testset: Random.Xoshiro(0x4e34e63582c21208, 0x5821c9cbaa2405bd, 0x19ec45d3950a21d9, 0x8c01a0bff5756365, 0xac4305fa2096843f) Error During Test at /home/pkgeval/.julia/packages/TMLE/RG6ue/test/runtests.jl:21 Test threw exception Expression: include(joinpath(TEST_DIR, "counterfactual_mean_based/fluctuation.jl")) LoadError: Some tests did not pass: 19 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TMLE/RG6ue/test/counterfactual_mean_based/fluctuation.jl:1 ERROR: LoadError: There was an error during testing in expression starting at /home/pkgeval/.julia/packages/TMLE/RG6ue/test/runtests.jl:6 Testing failed after 709.16s ERROR: LoadError: Package TMLE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3283 [3] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:587 [4] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [5] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [6] test(pkg::String; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [inlined] [7] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1989.41s: package has test failures